FvH4_2g06960

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000235
Physical Location & Seq
Reverse (-)
5728489 .. 5730699
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06960.t3

Sequence Viewer

Length: 522 bp
ATGGCAACCTTCTGCACACTGTTATCTCCTGGAATCAGCAATGAGATTTTGATTATCCCACAAGAGTTTCAGAAGCATATATTGAATGAGCTTTTAGAGCTAGCACTTTTGAAGATAAAATATTTTTCACATTGTGCATGGAACATTAGAGTACATCAAATTGGAACCAATATTTATCTGAAGGAAGGCTGGAGGGAGTTTTTAGAAGATCACTCCATTGGCGACGGTGAGCTCTTGATAGTCAGATATGATGGACGTATGCAATTCAGTATACAGATATTTGACAAGAATCATATTGAGAGGATCGATTTTCCTGATACCGAAATACAGGATGAAAATCTGGCTTTTGCTAACGATTCAGCTTCTGTTGGAAACATTCCGAGTTGCCAGTCCAGTGAATTCAAAGAGATTAACAAAGGGGAAGCTGCCGCATTCACCAATTCAGAGTTCCCTTCGTTTACAGTTACTATCCCGGACTACTGTTATGGTCTGGTAAACGAGAGTTCCAGCAGACTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

174

Amino Acids

19.76

Weight (kDa)

4.72

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 4 - 97 3.1e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 271
AciI CCGC 1 cut(s) 429
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 398
AcuI CTGAAG 2 cut(s) 200, 500
AdeI CACNNNGTG 1 cut(s) 134
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 3 cut(s) 85, 112, 403
AjnI CCWGG 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 91, 100, 232, 362, 425
AluI AGCT 5 cut(s) 91, 100, 232, 362, 425
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 239, 427
AsuNHI GCTAGC 1 cut(s) 100
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 30
BcnI CCSGG 1 cut(s) 473
BfaI CTAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 426, 429
BlsI GCNGC 2 cut(s) 427, 430
Bme1390I CCNGG 2 cut(s) 30, 473
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 30, 473
BmtI GCTAGC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 473
Bsa29I ATCGAT 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 388, 393
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 30
BseCI ATCGAT 1 cut(s) 306
BseGI GGATG 1 cut(s) 337
BseJI GATNNNNATC 1 cut(s) 336
BseMI GCAATG 1 cut(s) 46
BseNI ACTGG 2 cut(s) 388, 393
BseXI GCAGC 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 473
BsmI GAATGC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 2 cut(s) 208, 303
BspACI CCGC 1 cut(s) 429
BspDI ATCGAT 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 166
BspOI GCTAGC 1 cut(s) 104
BspPI GGATC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 46
BsrI ACTGG 2 cut(s) 388, 393
BssMI GATC 2 cut(s) 208, 303
BssNAI GTATAC 1 cut(s) 272
Bst1107I GTATAC 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 4 cut(s) 21, 227, 463, 482
BstC8I GCNNGC 1 cut(s) 102
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 2 cut(s) 211, 306
BstMBI GATC 2 cut(s) 208, 303
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 28, 471
BstV1I GCAGC 1 cut(s) 412
BstZ17I GTATAC 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 2 cut(s) 17, 400
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 365
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 138
CviJI RGCY 7 cut(s) 91, 100, 189, 232, 344, 362, 425
CviKI_1 RGCY 7 cut(s) 91, 100, 189, 232, 344, 362, 425
CviQI GTAC 1 cut(s) 152
DpnI GATC 2 cut(s) 210, 305
DpnII GATC 2 cut(s) 208, 303
DraIII CACNNNGTG 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 200, 500
EcoICRI GAGCTC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 1 cut(s) 141
FaiI YATR 8 cut(s) 78, 80, 139, 249, 260, 272, 294, 486
FatI CATG 1 cut(s) 137
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 426, 429
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 426, 429
FspBI CTAG 1 cut(s) 101
GluI GCNGC 2 cut(s) 426, 429
GsuI CTGGAG 1 cut(s) 211
HapII CCGG 1 cut(s) 473
Hin1II CATG 1 cut(s) 141
HinfI GANTC 3 cut(s) 33, 289, 356
HpaII CCGG 1 cut(s) 473
HphI GGTGA 2 cut(s) 239, 427
Hpy166II GTNNAC 3 cut(s) 272, 459, 496
Hpy188I TCNGA 5 cut(s) 72, 180, 245, 381, 445
Hpy188III TCNNGA 2 cut(s) 235, 314
Hpy8I GTNNAC 3 cut(s) 272, 459, 496
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 4 cut(s) 19, 175, 179, 462
HpyCH4III ACNGT 4 cut(s) 21, 227, 463, 482
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 3 cut(s) 15, 137, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 1 cut(s) 141
Kzo9I GATC 2 cut(s) 208, 303
Lsp1109I GCAGC 1 cut(s) 412
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 463
MalI GATC 2 cut(s) 210, 305
MboI GATC 2 cut(s) 208, 303
MboII GAAGA 2 cut(s) 124, 218
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 159, 263, 398, 439
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 2 cut(s) 186, 294
MseI TTAA 1 cut(s) 411
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 2 cut(s) 30, 473
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 473
NdeII GATC 2 cut(s) 208, 303
NheI GCTAGC 1 cut(s) 100
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 1 cut(s) 166
PctI GAATGC 1 cut(s) 431
PfeI GAWTC 3 cut(s) 33, 289, 356
PfoI TCCNGGA 2 cut(s) 28, 471
PkrI GCNGC 2 cut(s) 427, 430
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 2 cut(s) 426, 429
Sau3AI GATC 2 cut(s) 208, 303
ScrFI CCNGG 2 cut(s) 30, 473
SduI GDGCHC 1 cut(s) 234
SetI ASST 7 cut(s) 11, 93, 102, 234, 259, 364, 427
Sse9I AATT 4 cut(s) 159, 263, 398, 439
SsiI CCGC 1 cut(s) 429
SspI AATATT 2 cut(s) 122, 172
SspMI CTAG 1 cut(s) 101
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 28, 471
TaaI ACNGT 4 cut(s) 21, 227, 463, 482
TaiI ACGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 306
TasI AATT 4 cut(s) 159, 263, 398, 439
TatI WGTACW 1 cut(s) 151
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 3 cut(s) 33, 289, 356
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 2 cut(s) 24, 400
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 1 cut(s) 348
TspRI CASTG 2 cut(s) 24, 400
XapI RAATTY 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 271
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.