RLG00000007345

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000235
Physical Location & Seq
Reverse (-)
16038631 .. 16040429
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007345

Sequence Viewer

Length: 780 bp
ATGGCGAGAAGAGCATGCACATCTCTTCCATTTCATGATGGTAGTGTTGAGGAGGAGAAGGGGCCTACCTTCTTCAAGATCATAAGGCCTGGATTCAACACTGAGCATGTGAGAATCCCACCTGCATTTCGGAAGCATTTATTACATGAATCCACTAAGAGGGCAACCTTGAAATTGAAGAATTCATCAGATACTTCCTGGACTGTTAAAGTAAGTATAACAGGAAGGGAAATATATTTGAAGGATGGCTGGCAGGAGTTTTTAAGAGATAACTCCCTAGGTGATTCCGAGTTCATAGTATTTAGGTATGACAAAAATATGCATTTCATCATTAATATTTTTGACAAGAATTGTGTTGAGAGAGTGAATATCACCGACCTCAGAACACGTAAAGCATCCACCTTTCCAGACAATACTAAAGGGCCTTTGGCAAGACCACCTACAGGTACTTACTCCAGCGAGCGCCTTCCAAGTTATGCAGCTGCTGCAGCTTTCAAATCCAAATTTCCTTACTTTGCAAAAGTTCTTGCAGGATCGAAGATGGTGGCAATTCCCACACACTTCTATAGGAAGATATTTTCTTCAAGCAAATATGATGAACTTTTCCTGGTGACTTCAGAGGGAAATTTCACTGTGACGCTTCTCCCATGCACTGATACAGTGATGTTGTCTGGAGGGTGGTCTTCCTTTAGAAATGACAACCAACTCCAAGAAGATGATATTTGCATCTTTGAGCTTGTGAAAGAAAACACCATGGTGGTTCACATTTTCCGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

260

Amino Acids

29.66

Weight (kDa)

9.2

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 24 - 117 3.8e-17 B3 DNA binding domain
B3 PF02362 179 - 259 2.2e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 3 cut(s) 181, 503, 625
AcuI CTGAAG 1 cut(s) 600
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 159, 443
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 7 cut(s) 76, 97, 172, 178, 241, 496, 585
AjnI CCWGG 3 cut(s) 88, 197, 606
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 3 cut(s) 482, 491, 736
AluI AGCT 3 cut(s) 482, 491, 736
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 3 cut(s) 62, 86, 422
ApeKI GCWGC 4 cut(s) 479, 482, 485, 488
ApoI RAATTY 3 cut(s) 181, 503, 625
AseI ATTAAT 1 cut(s) 333
AspA2I CCTAGG 1 cut(s) 277
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 2 cut(s) 62, 422
AsuHPI GGTGA 3 cut(s) 293, 364, 622
AvrII CCTAGG 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 675
BbvI GCAGC 4 cut(s) 469, 472, 491, 500
BccI CCATC 3 cut(s) 32, 239, 535
BciT130I CCWGG 3 cut(s) 90, 199, 608
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 3 cut(s) 441, 486, 565
BfoI RGCGCY 1 cut(s) 466
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 4 cut(s) 480, 483, 486, 489
BlnI CCTAGG 1 cut(s) 277
BlsI GCNGC 4 cut(s) 481, 484, 487, 490
Bme1390I CCNGG 3 cut(s) 90, 199, 608
BmgT120I GGNCC 2 cut(s) 62, 422
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 3 cut(s) 90, 199, 608
BmsI GCATC 2 cut(s) 404, 735
BpiI GAAGAC 1 cut(s) 675
BpmI CTGGAG 2 cut(s) 439, 693
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 277, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 443
BseBI CCWGG 3 cut(s) 90, 199, 608
BseDI CCNNGG 2 cut(s) 277, 753
BseGI GGATG 2 cut(s) 250, 395
BseLI CCNNNNNNNGG 2 cut(s) 159, 443
BseMII CTCAG 2 cut(s) 93, 394
BseRI GAGGAG 2 cut(s) 65, 68
BseXI GCAGC 4 cut(s) 469, 472, 491, 500
BshFI GGCC 3 cut(s) 64, 88, 424
BslI CCNNNNNNNGG 2 cut(s) 159, 443
BsnI GGCC 3 cut(s) 64, 88, 424
Bsp143I GATC 2 cut(s) 78, 533
Bsp19I CCATGG 1 cut(s) 753
BspANI GGCC 3 cut(s) 64, 88, 424
BspCNI CTCAG 2 cut(s) 94, 393
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 541
BspQI GCTCTTC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 277, 753
BssMI GATC 2 cut(s) 78, 533
BssT1I CCWWGG 2 cut(s) 277, 753
Bst2UI CCWGG 3 cut(s) 90, 199, 608
Bst4CI ACNGT 3 cut(s) 205, 634, 661
Bst6I CTCTTC 2 cut(s) 4, 30
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 3 cut(s) 16, 251, 461
BstDEI CTNAG 3 cut(s) 102, 156, 380
BstDSI CCRYGG 1 cut(s) 753
BstF5I GGATG 2 cut(s) 250, 395
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 2 cut(s) 81, 536
BstMBI GATC 2 cut(s) 78, 533
BstMWI GCNNNNNNNGC 3 cut(s) 11, 485, 488
BstNI CCWGG 3 cut(s) 90, 199, 608
BstNSI RCATGY 2 cut(s) 18, 110
BstSCI CCNGG 3 cut(s) 88, 197, 606
BstSFI CTRYAG 3 cut(s) 441, 486, 565
BstV1I GCAGC 4 cut(s) 469, 472, 491, 500
BstV2I GAAGAC 1 cut(s) 675
BsuRI GGCC 3 cut(s) 64, 88, 424
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 2 cut(s) 250, 395
BtsIMutI CAGTG 4 cut(s) 99, 630, 651, 666
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 3 cut(s) 16, 251, 461
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 62, 422
CseI GACGC 1 cut(s) 646
Csp6I GTAC 1 cut(s) 447
CviAII CATG 6 cut(s) 15, 35, 107, 146, 648, 754
CviJI RGCY 7 cut(s) 64, 88, 249, 424, 482, 491, 736
CviKI_1 RGCY 7 cut(s) 64, 88, 249, 424, 482, 491, 736
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 3 cut(s) 102, 156, 380
DpnI GATC 2 cut(s) 80, 535
DpnII GATC 2 cut(s) 78, 533
Eam1104I CTCTTC 2 cut(s) 4, 30
EarI CTCTTC 2 cut(s) 4, 30
Eco130I CCWWGG 2 cut(s) 277, 753
Eco147I AGGCCT 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 600
EcoO109I RGGNCCY 2 cut(s) 62, 422
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 3 cut(s) 88, 197, 606
EcoT14I CCWWGG 2 cut(s) 277, 753
EcoT22I ATGCAT 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 277, 753
FaeI CATG 6 cut(s) 18, 38, 110, 149, 651, 757
FatI CATG 6 cut(s) 14, 34, 106, 145, 647, 753
Fnu4HI GCNGC 4 cut(s) 480, 483, 486, 489
FokI GGATG 2 cut(s) 257, 382
Fsp4HI GCNGC 4 cut(s) 480, 483, 486, 489
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 464
GluI GCNGC 4 cut(s) 480, 483, 486, 489
GsuI CTGGAG 2 cut(s) 439, 693
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 3 cut(s) 64, 88, 424
HgaI GACGC 1 cut(s) 646
HhaI GCGC 1 cut(s) 465
Hin1II CATG 6 cut(s) 18, 38, 110, 149, 651, 757
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HinfI GANTC 4 cut(s) 93, 114, 149, 284
HphI GGTGA 3 cut(s) 293, 364, 622
Hpy166II GTNNAC 1 cut(s) 763
Hpy188I TCNGA 6 cut(s) 132, 190, 289, 383, 619, 773
Hpy188III TCNNGA 4 cut(s) 35, 76, 407, 672
Hpy8I GTNNAC 1 cut(s) 763
HpyAV CCTTC 5 cut(s) 52, 79, 219, 235, 476
HpyCH4III ACNGT 3 cut(s) 205, 634, 661
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 9 cut(s) 18, 125, 322, 479, 488, 518, 530, 651, 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 485, 488
HpyF3I CTNAG 3 cut(s) 102, 156, 380
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 6 cut(s) 18, 38, 110, 149, 651, 757
HspAI GCGC 1 cut(s) 463
Kzo9I GATC 2 cut(s) 78, 533
LguI GCTCTTC 1 cut(s) 4
Lsp1109I GCAGC 4 cut(s) 469, 472, 491, 500
LweI GCATC 2 cut(s) 404, 735
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 2 cut(s) 610, 634
MalI GATC 2 cut(s) 80, 535
MboI GATC 2 cut(s) 78, 533
MboII GAAGA 9 cut(s) 17, 21, 64, 190, 550, 573, 583, 675, 725
MluCI AATT 6 cut(s) 173, 181, 349, 503, 549, 625
MnlI CCTC 6 cut(s) 43, 46, 153, 389, 613, 668
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 3 cut(s) 207, 263, 333
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 482
MspR9I CCNGG 3 cut(s) 90, 199, 608
MvaI CCWGG 3 cut(s) 90, 199, 608
MwoI GCNNNNNNNGC 3 cut(s) 11, 485, 488
NcoI CCATGG 1 cut(s) 753
NdeII GATC 2 cut(s) 78, 533
NlaIII CATG 6 cut(s) 18, 38, 110, 149, 651, 757
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 610, 634
NsiI ATGCAT 1 cut(s) 324
NspI RCATGY 2 cut(s) 18, 110
OliI CACNNNNGTG 1 cut(s) 755
PaeI GCATGC 1 cut(s) 18
PagI TCATGA 1 cut(s) 34
PaqCI CACCTGC 1 cut(s) 130
PceI AGGCCT 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 4
PfeI GAWTC 4 cut(s) 93, 114, 149, 284
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 4 cut(s) 481, 484, 487, 490
Ppu21I YACGTR 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 333
Psp6I CCWGG 3 cut(s) 88, 197, 606
PspGI CCWGG 3 cut(s) 88, 197, 606
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 62, 422
PstI CTGCAG 1 cut(s) 490
PstNI CAGNNNCTG 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 755
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 207, 263, 333
SatI GCNGC 4 cut(s) 480, 483, 486, 489
Sau3AI GATC 2 cut(s) 78, 533
Sau96I GGNCC 2 cut(s) 62, 422
ScrFI CCNGG 3 cut(s) 90, 199, 608
SfaNI GCATC 2 cut(s) 404, 735
SfcI CTRYAG 3 cut(s) 441, 486, 565
SmiMI CAYNNNNRTG 1 cut(s) 755
SphI GCATGC 1 cut(s) 18
Sse9I AATT 6 cut(s) 173, 181, 349, 503, 549, 625
SseBI AGGCCT 1 cut(s) 88
SspI AATATT 1 cut(s) 337
SspMI CTAG 1 cut(s) 278
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 3 cut(s) 88, 197, 606
StyI CCWWGG 2 cut(s) 277, 753
TaaI ACNGT 3 cut(s) 205, 634, 661
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 536
TasI AATT 6 cut(s) 173, 181, 349, 503, 549, 625
TfiI GAWTC 4 cut(s) 93, 114, 149, 284
Tru1I TTAA 3 cut(s) 207, 263, 333
Tru9I TTAA 3 cut(s) 207, 263, 333
TscAI CASTG 4 cut(s) 106, 637, 658, 666
TseFI GTSAC 2 cut(s) 610, 634
TseI GCWGC 4 cut(s) 479, 482, 485, 488
Tsp45I GTSAC 2 cut(s) 610, 634
TspDTI ATGAA 6 cut(s) 23, 162, 174, 283, 316, 612
TspRI CASTG 4 cut(s) 106, 637, 658, 666
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 3 cut(s) 181, 503, 625
XceI RCATGY 2 cut(s) 18, 110
XmaJI CCTAGG 1 cut(s) 277
XspI CTAG 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.