Rmu_sc0033846.1_g000001

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033846.1
OG0000235
Physical Location & Seq
Forward (+)
1 .. 1442
1442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033846.1_g000001.1.cds

Sequence Viewer

Length: 823 bp
gaagcacatcttgaatgaactctctataagggcaactttgactctgagcagttctgcagattcttcatggaatgtcagagcccataaaataggaagggatatttatctcaaggaaggatggcaagagtttctaagagataactccttaggtgattcagagttcttgatgtttggatatgatggaaatatgcatttcagcgtagatatttttgagaagaattgttgtaagagaaccaaagctcctgctttgagaaggcatcaacaatccacctttactaacaatactaaaagaccacgtggtagaccaagaaagagaggtgatgcagctgaacacactctaaatggtgaatccagtaacagtactaaaagacctcgtggtagaccaagaaagagcggtgatgcagctgaacacactctaaatggtgaatccagaaacagtactaaaagacctcgtggtagaccaagaaagagcggcgatgcagctgaacacactccaaatggtgaatccagtattcccatagagtatactgaatcaagattccccgcttttatccgaaccattaataaagtctatggagtggatttgcccacaggcttctgtaggaagcatcttgttcctcctgactactacaaattcatcctggaaaatacagagggagacagatgggaagtgaatggtgttcctagcaataatacaattatgttgtcatgtggatgggtttcttttgcacggggtaacggagttgaaataggagatgattgcttgtttgagctccagagcaaaagcaagatggtggttcacaaaattaggcaaaacaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

273

Amino Acids

30.98

Weight (kDa)

9.68

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 394, 472
AccI GTMKAC 4 cut(s) 302, 380, 458, 525
AciI CCGC 3 cut(s) 394, 472, 544
AcsI RAATTY 1 cut(s) 633
AcvI CACGTG 1 cut(s) 297
AfaI GTAC 2 cut(s) 362, 440
AgsI TTSAA 2 cut(s) 14, 747
AjnI CCWGG 1 cut(s) 640
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
AluBI AGCT 5 cut(s) 240, 327, 405, 483, 773
AluI AGCT 5 cut(s) 240, 327, 405, 483, 773
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 1 cut(s) 652
ApeKI GCWGC 3 cut(s) 324, 402, 480
ApoI RAATTY 1 cut(s) 633
AseI ATTAAT 1 cut(s) 562
AsuHPI GGTGA 6 cut(s) 162, 330, 357, 408, 435, 513
AxyI CCTNAGG 1 cut(s) 146
BanII GRGCYC 2 cut(s) 83, 775
BauI CACGAG 2 cut(s) 373, 451
BbrPI CACGTG 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 3 cut(s) 336, 414, 492
BccI CCATC 5 cut(s) 112, 174, 658, 709, 785
BciT130I CCWGG 1 cut(s) 642
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 1 cut(s) 685
BfmI CTRYAG 2 cut(s) 55, 599
BisI GCNGC 4 cut(s) 325, 403, 473, 481
BlsI GCNGC 4 cut(s) 326, 404, 474, 482
BmcAI AGTACT 2 cut(s) 362, 440
Bme1390I CCNGG 1 cut(s) 642
BmrFI CCNGG 1 cut(s) 642
BmsI GCATC 5 cut(s) 266, 311, 389, 467, 617
BpmI CTGGAG 1 cut(s) 759
BpuEI CTTGAG 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 103
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bse1I ACTGG 2 cut(s) 352, 508
Bse21I CCTNAGG 1 cut(s) 146
Bse8I GATNNNNATC 1 cut(s) 103
BseBI CCWGG 1 cut(s) 642
BseGI GGATG 3 cut(s) 123, 637, 720
BseJI GATNNNNATC 1 cut(s) 103
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 2 cut(s) 352, 508
BseXI GCAGC 3 cut(s) 336, 414, 492
BsiHKAI GWGCWC 1 cut(s) 775
BsmAI GTCTC 1 cut(s) 652
Bsp1286I GDGCHC 2 cut(s) 83, 775
BspACI CCGC 3 cut(s) 394, 472, 544
BspCNI CTCAG 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 59
BsrBI CCGCTC 2 cut(s) 394, 472
BsrI ACTGG 2 cut(s) 352, 508
BssNAI GTATAC 1 cut(s) 526
BssSI CACGAG 2 cut(s) 373, 451
Bst1107I GTATAC 1 cut(s) 526
Bst2BI CACGAG 2 cut(s) 373, 451
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 2 cut(s) 360, 438
BstBAI YACGTR 1 cut(s) 297
BstDEI CTNAG 3 cut(s) 45, 132, 146
BstF5I GGATG 3 cut(s) 123, 637, 720
BstMAI GTCTC 1 cut(s) 652
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 640
BstSFI CTRYAG 2 cut(s) 55, 599
BstV1I GCAGC 3 cut(s) 336, 414, 492
BstZ17I GTATAC 1 cut(s) 526
Bsu36I CCTNAGG 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 490
BtsCI GGATG 3 cut(s) 123, 637, 720
Csp6I GTAC 2 cut(s) 361, 439
CviAII CATG 2 cut(s) 67, 709
CviJI RGCY 7 cut(s) 81, 240, 327, 405, 483, 595, 773
CviKI_1 RGCY 7 cut(s) 81, 240, 327, 405, 483, 595, 773
CviQI GTAC 2 cut(s) 361, 439
DdeI CTNAG 3 cut(s) 45, 132, 146
Ecl136II GAGCTC 1 cut(s) 773
Eco24I GRGCYC 2 cut(s) 83, 775
Eco53kI GAGCTC 1 cut(s) 773
Eco72I CACGTG 1 cut(s) 297
Eco81I CCTNAGG 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 773
EcoRII CCWGG 1 cut(s) 640
EcoT22I ATGCAT 1 cut(s) 193
EcoT38I GRGCYC 2 cut(s) 83, 775
FaeI CATG 2 cut(s) 70, 712
FalI AAGNNNNNCTT 3 cut(s) 26, 20, 52
FatI CATG 2 cut(s) 66, 708
FauI CCCGC 1 cut(s) 551
FblI GTMKAC 4 cut(s) 302, 380, 458, 525
Fnu4HI GCNGC 4 cut(s) 325, 403, 473, 481
FokI GGATG 3 cut(s) 130, 624, 727
FriOI GRGCYC 2 cut(s) 83, 775
Fsp4HI GCNGC 4 cut(s) 325, 403, 473, 481
FspBI CTAG 1 cut(s) 685
GluI GCNGC 4 cut(s) 325, 403, 473, 481
GsuI CTGGAG 1 cut(s) 759
Hin1II CATG 2 cut(s) 70, 712
HinfI GANTC 8 cut(s) 41, 60, 153, 348, 426, 504, 531, 538
HphI GGTGA 6 cut(s) 162, 330, 357, 408, 435, 513
Hpy166II GTNNAC 5 cut(s) 303, 381, 459, 526, 800
Hpy188I TCNGA 4 cut(s) 46, 78, 158, 555
Hpy188III TCNNGA 6 cut(s) 11, 164, 430, 535, 621, 776
Hpy8I GTNNAC 5 cut(s) 303, 381, 459, 526, 800
HpyAV CCTTC 3 cut(s) 88, 108, 247
HpyCH4III ACNGT 2 cut(s) 360, 438
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 6 cut(s) 57, 191, 324, 402, 480, 729
HpyF3I CTNAG 3 cut(s) 45, 132, 146
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 2 cut(s) 70, 712
LmnI GCTCC 2 cut(s) 245, 778
LpnPI CCDG 9 cut(s) 256, 365, 443, 521, 577, 627, 634, 654, 789
Lsp1109I GCAGC 3 cut(s) 336, 414, 492
LweI GCATC 5 cut(s) 266, 311, 389, 467, 617
MaeI CTAG 1 cut(s) 685
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 2 cut(s) 354, 735
MbiI CCGCTC 2 cut(s) 394, 472
MboII GAAGA 2 cut(s) 55, 227
MhlI GDGCHC 2 cut(s) 83, 775
MluCI AATT 4 cut(s) 218, 633, 697, 805
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 5 cut(s) 309, 382, 460, 628, 647
Mph1103I ATGCAT 1 cut(s) 193
MseI TTAA 1 cut(s) 562
MslI CAYNNNNRTG 1 cut(s) 713
MspA1I CMGCKG 3 cut(s) 327, 405, 483
MspR9I CCNGG 1 cut(s) 642
MvaI CCWGG 1 cut(s) 642
NlaIII CATG 2 cut(s) 70, 712
NsiI ATGCAT 1 cut(s) 193
PfeI GAWTC 7 cut(s) 60, 153, 348, 426, 504, 531, 538
PfoI TCCNGGA 1 cut(s) 640
PkrI GCNGC 4 cut(s) 326, 404, 474, 482
PleI GAGTC 1 cut(s) 35
PmaCI CACGTG 1 cut(s) 297
PmlI CACGTG 1 cut(s) 297
PpsI GAGTC 1 cut(s) 35
Ppu21I YACGTR 1 cut(s) 297
PshBI ATTAAT 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 775
Psp6I CCWGG 1 cut(s) 640
PspCI CACGTG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 640
PstI CTGCAG 1 cut(s) 59
PvuII CAGCTG 3 cut(s) 327, 405, 483
RsaI GTAC 2 cut(s) 362, 440
RsaNI GTAC 2 cut(s) 361, 439
RseI CAYNNNNRTG 1 cut(s) 713
SacI GAGCTC 1 cut(s) 775
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 4 cut(s) 325, 403, 473, 481
ScaI AGTACT 2 cut(s) 362, 440
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 2 cut(s) 83, 775
SfaNI GCATC 5 cut(s) 266, 311, 389, 467, 617
SfcI CTRYAG 2 cut(s) 55, 599
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 4 cut(s) 218, 633, 697, 805
SsiI CCGC 3 cut(s) 394, 472, 544
SspMI CTAG 1 cut(s) 685
SstI GAGCTC 1 cut(s) 775
StyD4I CCNGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 360, 438
TaiI ACGT 1 cut(s) 299
TasI AATT 4 cut(s) 218, 633, 697, 805
TatI WGTACW 2 cut(s) 360, 438
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 7 cut(s) 60, 153, 348, 426, 504, 531, 538
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TseI GCWGC 3 cut(s) 324, 402, 480
TspDTI ATGAA 3 cut(s) 31, 55, 626
TspGWI ACGGA 1 cut(s) 754
VspI ATTAAT 1 cut(s) 562
XapI RAATTY 1 cut(s) 633
XmiI GTMKAC 4 cut(s) 302, 380, 458, 525
XspI CTAG 1 cut(s) 685
ZrmI AGTACT 2 cut(s) 362, 440
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.