Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8454279.1

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

43 .. 1624

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8454279.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atggtgaagatatccaggaatggtgttgaggagaaaaagcctagcttcttcaaggttattctacctggctacagcactgagcatttgagattcccacctagattcctccggaagcacattgtgaacaaactttctaaaagggcaacattaaagttgaagcgatccccagcgtggtcatggaaggttgaagtgatgagaaaatcgggaggagatgtgtatttgaaagatggatggcaggagtttctgagagatgcctgcttgggtgacaaagagtttttagtgttcatatacaacggaaaaatgcgtttcagcataaaggtttacgacaagaatgggtgtgagagaatggatttccctgacatcaaaacacaccaacacacaacctcatctaggagtactaaaaggcctgttaggagaccaagaaaatcgagcgcaggcaattcagctgataagctcaaaaaggttaaagaagaggaagtagattgcaataacactacagacaaatgcgcttctaagagtactgaaatgcttcgtggtagaccaacaaaaactactgaggagtataccaagaggcgtctcggtagaccaacaaaacctacctctaagagtactaagaggcctcctgttagagcaacaaaaaaaacttctgagagtactaagaggcctcctattacaccagcaaaaactacttttgagagtactaagaggcctcgtggtagaccaagaaaatatcctgtcacgtgtaaagactcgggtaagcacagtccaaattctgaatttgatgtactcagagaggtcaaagaagaggaagaagatttccaagaatctggtgaactgttcaaatccaaattgcaatactttacatgcaaaatcaacaggctaagtcaagtgtacatgcccaaaccgttctatggggaaaatctttcttcaggaaactatgaagttatttacctgaaaaattctgagggaacaaaatggtacaaagtgaagctttcccgttaccataacacggccttcatgactaaagggtggggtgcttttgcagttgctaaccaagtcaaggtgggcagtctgtgccaatttcagttcctaaaggaaaacagaattgttgttcacatattgaacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

376

Amino Acids

43.64

Weight (kDa)

10.05

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	538, 563, 583, 718
AccIII	TCCGGA	1 cut(s)	108
AclWI	GGATC	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	769, 776, 958
AcuI	CTGAAG	1 cut(s)	912
AcvI	CACGTG	1 cut(s)	741
AcyI	GRCGYC	1 cut(s)	574
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	8 cut(s)	397, 520, 610, 655, 700, 786, 893, 980
AfiI	CCNNNNNNNGG	5 cut(s)	171, 390, 911, 1009, 1060
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	6 cut(s)	52, 157, 188, 223, 841, 1123
AjnI	CCWGG	2 cut(s)	14, 64
AluBI	AGCT	4 cut(s)	45, 446, 454, 991
AluI	AGCT	4 cut(s)	45, 446, 454, 991
Alw26I	GTCTC	2 cut(s)	409, 581
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	751
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	5 cut(s)	404, 617, 662, 707, 1011
ApoI	RAATTY	3 cut(s)	769, 776, 958
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	434, 509
AsuHPI	GGTGA	3 cut(s)	16, 275, 842
AvaI	CYCGRG	1 cut(s)	751
BauI	CACGAG	1 cut(s)	711
BbrPI	CACGTG	1 cut(s)	741
BccI	CCATC	2 cut(s)	221, 225
BceAI	ACGGC	1 cut(s)	1026
BciT130I	CCWGG	2 cut(s)	16, 66
BcoDI	GTCTC	2 cut(s)	409, 581
BfaI	CTAG	3 cut(s)	42, 99, 390
BfmI	CTRYAG	2 cut(s)	70, 495
BmcAI	AGTACT	5 cut(s)	397, 520, 610, 655, 700
Bme1390I	CCNGG	2 cut(s)	16, 66
BmeT110I	CYCGRG	1 cut(s)	751
BmrFI	CCNGG	2 cut(s)	16, 66
BmsI	GCATC	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	574
BsaI	GGTCTC	1 cut(s)	409
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 390, 911, 1009, 1060
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	16, 66
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	5 cut(s)	171, 390, 911, 1009, 1060
BseMII	CTCAG	6 cut(s)	69, 236, 546, 639, 802, 954
BseRI	GAGGAG	3 cut(s)	44, 222, 572
BseYI	CCCAGC	1 cut(s)	166
BshFI	GGCC	5 cut(s)	406, 619, 664, 709, 1013
BsiHKCI	CYCGRG	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	5 cut(s)	171, 390, 911, 1009, 1060
BsmAI	GTCTC	2 cut(s)	409, 581
BsmBI	CGTCTC	1 cut(s)	581
BsnI	GGCC	5 cut(s)	406, 619, 664, 709, 1013
Bso31I	GGTCTC	1 cut(s)	409
BsoBI	CYCGRG	1 cut(s)	751
Bsp13I	TCCGGA	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	891
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	5 cut(s)	406, 619, 664, 709, 1013
BspCNI	CTCAG	6 cut(s)	70, 237, 547, 640, 801, 955
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	1017
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	1 cut(s)	409
BsrGI	TGTACA	1 cut(s)	891
BssMI	GATC	1 cut(s)	161
BssNAI	GTATAC	1 cut(s)	564
BssNI	GRCGYC	1 cut(s)	574
BssSI	CACGAG	1 cut(s)	711
Bst1107I	GTATAC	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	711
Bst2UI	CCWGG	2 cut(s)	16, 66
Bst4CI	ACNGT	3 cut(s)	764, 837, 906
Bst6I	CTCTTC	2 cut(s)	465, 798
BstACI	GRCGYC	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	1074
BstAUI	TGTACA	1 cut(s)	891
BstBAI	YACGTR	1 cut(s)	741
BstC8I	GCNNGC	2 cut(s)	256, 436
BstENI	CCTNNNNNAGG	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	236
BstHHI	GCGC	2 cut(s)	434, 509
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	2 cut(s)	409, 581
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	1074
BstNI	CCWGG	2 cut(s)	16, 66
BstNSI	RCATGY	2 cut(s)	867, 898
BstSCI	CCNGG	2 cut(s)	14, 64
BstSFI	CTRYAG	2 cut(s)	70, 495
BstXI	CCANNNNNNTGG	1 cut(s)	827
BstZ17I	GTATAC	1 cut(s)	564
BsuRI	GGCC	5 cut(s)	406, 619, 664, 709, 1013
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	256, 436
CciI	TCATGA	1 cut(s)	1017
CfoI	GCGC	2 cut(s)	434, 509
CseI	GACGC	1 cut(s)	563
Csp6I	GTAC	8 cut(s)	396, 519, 609, 654, 699, 785, 892, 979
CviAII	CATG	4 cut(s)	177, 864, 895, 1018
CviQI	GTAC	8 cut(s)	396, 519, 609, 654, 699, 785, 892, 979
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
DraIII	CACNNNGTG	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	465, 798
EarI	CTCTTC	2 cut(s)	465, 798
Eco147I	AGGCCT	4 cut(s)	406, 619, 664, 709
Eco31I	GGTCTC	1 cut(s)	409
Eco32I	GATATC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	912
Eco72I	CACGTG	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	751
EcoNI	CCTNNNNNAGG	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	14, 64
EcoRV	GATATC	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	4 cut(s)	180, 867, 898, 1021
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 975, 1007
FatI	CATG	4 cut(s)	176, 863, 894, 1017
FblI	GTMKAC	4 cut(s)	538, 563, 583, 718
FokI	GGATG	1 cut(s)	243
FspBI	CTAG	3 cut(s)	42, 99, 390
GlaI	GCGC	2 cut(s)	433, 508
GsaI	CCCAGC	1 cut(s)	170
HaeIII	GGCC	5 cut(s)	406, 619, 664, 709, 1013
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	563
HhaI	GCGC	2 cut(s)	434, 509
Hin1I	GRCGYC	1 cut(s)	574
Hin1II	CATG	4 cut(s)	180, 867, 898, 1021
Hin6I	GCGC	2 cut(s)	432, 507
HinP1I	GCGC	2 cut(s)	432, 507
HindIII	AAGCTT	1 cut(s)	989
HinfI	GANTC	4 cut(s)	90, 102, 749, 824
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	3 cut(s)	16, 275, 842
Hpy166II	GTNNAC	9 cut(s)	124, 322, 539, 564, 584, 719, 833, 892, 1114
Hpy188I	TCNGA	5 cut(s)	246, 649, 775, 791, 964
Hpy188III	TCNNGA	4 cut(s)	109, 204, 930, 1018
Hpy8I	GTNNAC	9 cut(s)	124, 322, 539, 564, 584, 719, 833, 892, 1114
HpyAV	CCTTC	2 cut(s)	175, 1024
HpyCH4III	ACNGT	3 cut(s)	764, 837, 906
HpyCH4IV	ACGT	1 cut(s)	740
HpyCH4V	TGCA	4 cut(s)	486, 853, 867, 1043
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1074
HpySE526I	ACGT	1 cut(s)	740
Hsp92I	GRCGYC	1 cut(s)	574
Hsp92II	CATG	4 cut(s)	180, 867, 898, 1021
HspAI	GCGC	2 cut(s)	432, 507
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	161
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	42, 99, 390
MaeII	ACGT	1 cut(s)	740
MaeIII	GTNAC	3 cut(s)	263, 736, 998
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	7 cut(s)	19, 40, 482, 815, 821, 824, 918
MfeI	CAATTG	1 cut(s)	1126
MluCI	AATT	8 cut(s)	439, 769, 776, 848, 958, 1079, 1104, 1126
MlyI	GAGTC	1 cut(s)	743
MroI	TCCGGA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	2 cut(s)	149, 465
MspA1I	CMGCKG	1 cut(s)	446
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	16, 66
MunI	CAATTG	1 cut(s)	1126
MvaI	CCWGG	2 cut(s)	16, 66
MwoI	GCNNNNNNNGC	1 cut(s)	1074
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	180, 867, 898, 1021
NmuCI	GTSAC	2 cut(s)	263, 736
NspI	RCATGY	2 cut(s)	867, 898
PagI	TCATGA	1 cut(s)	1017
PceI	AGGCCT	4 cut(s)	406, 619, 664, 709
PdmI	GAANNNNTTC	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	90, 102, 824
PfoI	TCCNGGA	1 cut(s)	14
PleI	GAGTC	1 cut(s)	743
PmaCI	CACGTG	1 cut(s)	741
PmlI	CACGTG	1 cut(s)	741
PpsI	GAGTC	1 cut(s)	743
Ppu21I	YACGTR	1 cut(s)	741
Psp6I	CCWGG	2 cut(s)	14, 64
PspCI	CACGTG	1 cut(s)	741
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	14, 64
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	8 cut(s)	397, 520, 610, 655, 700, 786, 893, 980
RsaNI	GTAC	8 cut(s)	396, 519, 609, 654, 699, 785, 892, 979
SaqAI	TTAA	2 cut(s)	149, 465
Sau3AI	GATC	1 cut(s)	161
ScaI	AGTACT	5 cut(s)	397, 520, 610, 655, 700
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	16, 66
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	70, 495
Sse9I	AATT	8 cut(s)	439, 769, 776, 848, 958, 1079, 1104, 1126
SseBI	AGGCCT	4 cut(s)	406, 619, 664, 709
SspMI	CTAG	3 cut(s)	42, 99, 390
StuI	AGGCCT	4 cut(s)	406, 619, 664, 709
StyD4I	CCNGG	2 cut(s)	14, 64
TaaI	ACNGT	3 cut(s)	764, 837, 906
TaiI	ACGT	1 cut(s)	743
TaqI	TCGA	1 cut(s)	428
TasI	AATT	8 cut(s)	439, 769, 776, 848, 958, 1079, 1104, 1126
TatI	WGTACW	7 cut(s)	395, 518, 608, 653, 698, 784, 891
TfiI	GAWTC	3 cut(s)	90, 102, 824
Tru1I	TTAA	2 cut(s)	149, 465
Tru9I	TTAA	2 cut(s)	149, 465
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	263, 736
Tsp45I	GTSAC	2 cut(s)	263, 736
TspDTI	ATGAA	3 cut(s)	274, 954, 1006
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	82
XagI	CCTNNNNNAGG	1 cut(s)	388
XapI	RAATTY	3 cut(s)	769, 776, 958
XceI	RCATGY	2 cut(s)	867, 898
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XmiI	GTMKAC	4 cut(s)	538, 563, 583, 718
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	3 cut(s)	42, 99, 390
ZrmI	AGTACT	5 cut(s)	397, 520, 610, 655, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.