Rroxscaffold_7G00206560

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000235
Physical Location & Seq
Reverse (-)
56363869 .. 56365765
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00206560.1

Sequence Viewer

Length: 765 bp
ATGGCAACAAGAACATTTGAGAATGGTGTTGAGGAGGAGAAGAAAGGGCCAACCTTCTGCACATTTTTATCTCCTGGAATCAGCAATGAGATTTTGAAATTCCCACAAAATTTCCAGAAGCATATATTGAATGAGCTCTCAGAGCTGGCTCTTTTGAAGATAAAAGACTCCTCACATTGTTCATGGAACATTAGAGTACATCAAACTGGAAGCTGTATTTATCTGAAGGAAGGCTGGAGAGAGTTTTTAGAAGATCACTCAATTGGTGACGGTGAGTTTTTGTTAGTCAGATATGATGGACGTATGCAATTCAGTATACAGATATTTGACAAGAACCATGTTGAGAGGGTCGACTTTCCTGATACTGAAACACATGATAAAAATCGGACTTTTGCTAACAATTCAGAGCTCAATGGAGGGGAAGAAGATTACCAACACTATAGAGCTCAGGAAAATGCTAAGCAGTTCAAATCCAAGTTGCCAGCAGTGGCAATCACTATCGGAAACTCTATTTATTATGCGGGATTTCCCACAGAATGGTGTAGGAAGTATTTACCAGCAGGCAACTACAAATTTTTGCTGAGAAACGCAGAAGATTTAGAGGGAAGAACATGGGAAGTGAATGGTGTTCCTACCAATGATAGGGTCATGTTATCTGCAGGGTGGGCTGCTTTTCTACAGGGTAACCAAGTCAAGAAAGGAGATGTTTGCTGGCTTGAGCTCGAGAGTAAAAGCAAGGTGGTGGCTCACATAATTCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

254

Amino Acids

29.26

Weight (kDa)

6.26

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 112 1.8e-12 B3 DNA binding domain
B3 PF02362 177 - 253 4.4e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 537
AccI GTMKAC 2 cut(s) 316, 351
AciI CCGC 1 cut(s) 521
AcsI RAATTY 3 cut(s) 98, 109, 572
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 2 cut(s) 537, 642
AgsI TTSAA 4 cut(s) 97, 130, 157, 469
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 6 cut(s) 136, 145, 213, 409, 446, 721
AluI AGCT 6 cut(s) 136, 145, 213, 409, 446, 721
Alw21I GWGCWC 4 cut(s) 138, 411, 448, 723
Ama87I CYCGRG 1 cut(s) 722
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 668
ApoI RAATTY 3 cut(s) 98, 109, 572
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 278, 284
AvaI CYCGRG 1 cut(s) 722
BanII GRGCYC 4 cut(s) 138, 411, 448, 723
Bbv12I GWGCWC 4 cut(s) 138, 411, 448, 723
BbvI GCAGC 1 cut(s) 655
BccI CCATC 1 cut(s) 290
BciT130I CCWGG 1 cut(s) 75
BfmI CTRYAG 3 cut(s) 439, 657, 677
BisI GCNGC 1 cut(s) 669
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 75
BmeT110I CYCGRG 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 737
BsaBI GATNNNNATC 1 cut(s) 381
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 642
Bse1I ACTGG 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 537, 642
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 3 cut(s) 153, 461, 572
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 3 cut(s) 47, 50, 160
BseXI GCAGC 1 cut(s) 655
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 4 cut(s) 138, 411, 448, 723
BsiHKCI CYCGRG 1 cut(s) 722
BslI CCNNNNNNNGG 2 cut(s) 537, 642
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 722
Bsp1286I GDGCHC 4 cut(s) 138, 411, 448, 723
Bsp143I GATC 1 cut(s) 253
Bsp1720I GCTNAGC 1 cut(s) 459
BspACI CCGC 1 cut(s) 521
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 3 cut(s) 152, 460, 573
BspMAI CTGCAG 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 253
BssNAI GTATAC 1 cut(s) 317
Bst1107I GTATAC 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 272
BstC8I GCNNGC 4 cut(s) 147, 483, 562, 713
BstDEI CTNAG 4 cut(s) 139, 447, 459, 581
BstEII GGTNACC 1 cut(s) 683
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 142, 665
BstNI CCWGG 1 cut(s) 75
BstPI GGTNACC 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 73
BstSFI CTRYAG 3 cut(s) 439, 657, 677
BstV1I GCAGC 1 cut(s) 655
BstZ17I GTATAC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 4 cut(s) 147, 483, 562, 713
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 197
CviAII CATG 5 cut(s) 183, 338, 374, 612, 649
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 4 cut(s) 139, 447, 459, 581
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Ecl136II GAGCTC 4 cut(s) 136, 409, 446, 721
Eco24I GRGCYC 4 cut(s) 138, 411, 448, 723
Eco53kI GAGCTC 4 cut(s) 136, 409, 446, 721
Eco57I CTGAAG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 722
Eco91I GGTNACC 1 cut(s) 683
EcoICRI GAGCTC 4 cut(s) 136, 409, 446, 721
EcoO65I GGTNACC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 73
EcoT38I GRGCYC 4 cut(s) 138, 411, 448, 723
FaeI CATG 5 cut(s) 186, 341, 377, 615, 652
FatI CATG 5 cut(s) 182, 337, 373, 611, 648
FauI CCCGC 1 cut(s) 514
FblI GTMKAC 2 cut(s) 316, 351
Fnu4HI GCNGC 1 cut(s) 669
FriOI GRGCYC 4 cut(s) 138, 411, 448, 723
Fsp4HI GCNGC 1 cut(s) 669
GluI GCNGC 1 cut(s) 669
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 1 cut(s) 49
Hin1II CATG 5 cut(s) 186, 341, 377, 615, 652
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 78, 167
HphI GGTGA 2 cut(s) 278, 284
Hpy166II GTNNAC 2 cut(s) 317, 352
Hpy188I TCNGA 7 cut(s) 142, 225, 290, 387, 406, 503, 759
Hpy188III TCNNGA 5 cut(s) 115, 359, 449, 694, 724
Hpy8I GTNNAC 2 cut(s) 317, 352
HpyAV CCTTC 3 cut(s) 64, 220, 224
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 301
HpyCH4V TGCA 3 cut(s) 60, 307, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 665
HpyF3I CTNAG 4 cut(s) 139, 447, 459, 581
HpySE526I ACGT 1 cut(s) 301
Hsp92II CATG 5 cut(s) 186, 341, 377, 615, 652
Kzo9I GATC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 655
MaeII ACGT 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 266, 683
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 7 cut(s) 52, 169, 263, 434, 437, 605, 618
MfeI CAATTG 1 cut(s) 261
MhlI GDGCHC 4 cut(s) 138, 411, 448, 723
MluCI AATT 7 cut(s) 98, 109, 261, 308, 400, 572, 753
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 6 cut(s) 25, 28, 181, 339, 410, 595
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 142, 665
NdeII GATC 1 cut(s) 253
NlaIII CATG 5 cut(s) 186, 341, 377, 615, 652
NmuCI GTSAC 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 722
PfeI GAWTC 1 cut(s) 78
PflMI CCANNNNNTGG 1 cut(s) 537
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 1 cut(s) 670
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
Psp124BI GAGCTC 4 cut(s) 138, 411, 448, 723
Psp6I CCWGG 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 683
PspGI CCWGG 1 cut(s) 73
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 661
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SacI GAGCTC 4 cut(s) 138, 411, 448, 723
SalI GTCGAC 1 cut(s) 350
SatI GCNGC 1 cut(s) 669
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 4 cut(s) 138, 411, 448, 723
SetI ASST 9 cut(s) 56, 138, 147, 215, 304, 411, 448, 723, 741
SfcI CTRYAG 3 cut(s) 439, 657, 677
Sfr274I CTCGAG 1 cut(s) 722
SlaI CTCGAG 1 cut(s) 722
SmlI CTYRAG 2 cut(s) 716, 722
SmoI CTYRAG 2 cut(s) 716, 722
Sse9I AATT 7 cut(s) 98, 109, 261, 308, 400, 572, 753
SsiI CCGC 1 cut(s) 521
SstI GAGCTC 4 cut(s) 138, 411, 448, 723
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 351, 723
TasI AATT 7 cut(s) 98, 109, 261, 308, 400, 572, 753
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 1 cut(s) 78
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 492
Van91I CCANNNNNTGG 1 cut(s) 537
XapI RAATTY 3 cut(s) 98, 109, 572
XhoI CTCGAG 1 cut(s) 722
XmiI GTMKAC 2 cut(s) 316, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.