Rh6CG096800

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000235
Physical Location & Seq
Forward (+)
10694715 .. 10698105
3391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG096800.1

Sequence Viewer

Length: 636 bp
ATGGTGAGACCCAAGAATGGTATCAAAGAAAAGCGGCCTTCATTTTTCAAGGTTATTATTCCAGGCTACTCCACTCAACATTTGAGGATCCCACCACCATTCTTGGAGTTTATAAGGAATGACCTATCTGATGAAGCAACCTTGAACTCGAACACTTGTTCAGAGAGGTCTTGGAATGTTAGAGTACGTAAAACAAAAGGAGGTGTGTATTTCAAGGATGGGTGGCAGGGGTTCTCAAAAGATAACTCTGTGGAAGATGGTGACTTTTTGGTATTCGAGTATGAAGGAAACATGCATTTCAGCGTACAGATTTTTGACAACAGTTGTTGTGAGAGAGACTCTTTTCCTGACATTGAAACACACACAAAATCCACCTTTGCTGAGTGTAAGAAAAGGCATCCTGGTAGACCGAGGAAATCAGATATCGGTTGTTCTAAGCGTCCCCTCGCATTGAACTCTAGAAAAGACAGTTCAGATAACATAGCTAAGAAAAGGCTTCCTGGTAGACCAAGAAAATCCCATATCCGTCGTTATAAGCGCCCCTGCCCATCAAACTCTGGCGAAGACAATTCAGGTAGCCGACTGGGGTTATATATACAGATTAATACTGGATGGACATCAAATAACAATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

211

Amino Acids

24.2

Weight (kDa)

9.72

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 15 - 107 2.8e-18 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 113, 534
AccI GTMKAC 2 cut(s) 406, 505
AciI CCGC 1 cut(s) 34
AclWI GGATC 2 cut(s) 82, 95
AfaI GTAC 2 cut(s) 186, 306
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 5 cut(s) 49, 145, 214, 356, 454
AjnI CCWGG 3 cut(s) 61, 400, 499
AluBI AGCT 1 cut(s) 485
AluI AGCT 1 cut(s) 485
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 2 cut(s) 82, 95
AoxI GGCC 1 cut(s) 35
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 16, 272
BamHI GGATCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 570
BccI CCATC 4 cut(s) 212, 251, 556, 606
BciT130I CCWGG 3 cut(s) 63, 402, 501
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 541
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 3 cut(s) 63, 402, 501
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 3 cut(s) 63, 402, 501
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 1 cut(s) 406
BmuI ACTGGG 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 570
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BsaAI YACGTR 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 616
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 588, 613
Bse8I GATNNNNATC 1 cut(s) 616
BseBI CCWGG 3 cut(s) 63, 402, 501
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 3 cut(s) 223, 397, 617
BseJI GATNNNNATC 1 cut(s) 616
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 2 cut(s) 588, 613
BshFI GGCC 1 cut(s) 37
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 17
BsmAI GTCTC 1 cut(s) 330
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 87
BspACI CCGC 1 cut(s) 34
BspANI GGCC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 82, 95
BsrI ACTGG 2 cut(s) 588, 613
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 63, 402, 501
Bst4CI ACNGT 2 cut(s) 323, 470
BstBAI YACGTR 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 381, 435, 486
BstF5I GGATG 3 cut(s) 223, 397, 617
BstH2I RGCGCY 1 cut(s) 541
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 1 cut(s) 87
BstNI CCWGG 3 cut(s) 63, 402, 501
BstNSI RCATGY 1 cut(s) 295
BstSCI CCNGG 3 cut(s) 61, 400, 499
BstSNI TACGTA 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 37
BtsCI GGATG 3 cut(s) 223, 397, 617
CfoI GCGC 1 cut(s) 540
CseI GACGC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 185, 305
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 1 cut(s) 292
CviJI RGCY 5 cut(s) 37, 66, 485, 496, 579
CviKI_1 RGCY 5 cut(s) 37, 66, 485, 496, 579
CviQI GTAC 2 cut(s) 185, 305
DdeI CTNAG 3 cut(s) 381, 435, 486
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
Eco105I TACGTA 1 cut(s) 188
Eco32I GATATC 1 cut(s) 424
EcoRII CCWGG 3 cut(s) 61, 400, 499
EcoRV GATATC 1 cut(s) 424
EcoT22I ATGCAT 1 cut(s) 297
FaeI CATG 1 cut(s) 295
FaiI YATR 9 cut(s) 113, 282, 293, 482, 522, 534, 592, 594, 596
FaqI GGGAC 1 cut(s) 426
FatI CATG 1 cut(s) 291
FblI GTMKAC 2 cut(s) 406, 505
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 3 cut(s) 230, 384, 624
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 459
GlaI GCGC 1 cut(s) 539
GluI GCNGC 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 541
HaeIII GGCC 1 cut(s) 37
HgaI GACGC 1 cut(s) 428
HhaI GCGC 1 cut(s) 540
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HinfI GANTC 1 cut(s) 338
HphI GGTGA 2 cut(s) 16, 272
Hpy166II GTNNAC 2 cut(s) 407, 506
Hpy188I TCNGA 5 cut(s) 130, 163, 421, 475, 635
Hpy188III TCNNGA 2 cut(s) 347, 459
Hpy8I GTNNAC 2 cut(s) 407, 506
Hpy99I CGWCG 1 cut(s) 531
HpyAV CCTTC 2 cut(s) 48, 278
HpyCH4III ACNGT 2 cut(s) 323, 470
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 295
HpyF3I CTNAG 3 cut(s) 381, 435, 486
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 1 cut(s) 538
Kzo9I GATC 1 cut(s) 87
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 260
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 266, 575
MflI RGATCY 1 cut(s) 87
MluCI AATT 1 cut(s) 568
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 5 cut(s) 78, 159, 194, 405, 455
Mph1103I ATGCAT 1 cut(s) 297
MseI TTAA 1 cut(s) 603
MspR9I CCNGG 3 cut(s) 63, 402, 501
MvaI CCWGG 3 cut(s) 63, 402, 501
NdeII GATC 1 cut(s) 87
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 260
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 1 cut(s) 295
PkrI GCNGC 1 cut(s) 36
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 188
PshBI ATTAAT 1 cut(s) 603
PsiI TTATAA 2 cut(s) 113, 534
Psp6I CCWGG 3 cut(s) 61, 400, 499
PspGI CCWGG 3 cut(s) 61, 400, 499
PspN4I GGNNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 2 cut(s) 186, 306
RsaNI GTAC 2 cut(s) 185, 305
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 63, 402, 501
SetI ASST 9 cut(s) 54, 126, 143, 170, 190, 205, 377, 487, 577
SfaNI GCATC 1 cut(s) 406
SnaBI TACGTA 1 cut(s) 188
Sse9I AATT 1 cut(s) 568
SsiI CCGC 1 cut(s) 34
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 3 cut(s) 61, 400, 499
TaaI ACNGT 2 cut(s) 323, 470
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 149, 276
TaqII GACCGA 1 cut(s) 424
TasI AATT 1 cut(s) 568
TauI GCSGC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TseFI GTSAC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 30, 147, 297
TspGWI ACGGA 1 cut(s) 515
VspI ATTAAT 1 cut(s) 603
XbaI TCTAGA 1 cut(s) 458
XceI RCATGY 1 cut(s) 295
XmiI GTMKAC 2 cut(s) 406, 505
XspI CTAG 1 cut(s) 459
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.