Rmu_sc0010546.1_g000001

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010546.1
OG0000235
Physical Location & Seq
Forward (+)
1 .. 747
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010546.1_g000001.1.cds

Sequence Viewer

Length: 322 bp
agctcgggaaaatgctaagcagttcaaatccaagttcccagcagtggcaatcactatcggaaactctagttattatgcgggatttcccacagaatggtgtaggaagtatttaccagcaaaccgctacaaatttttgctgagaaacgcagaagatttagagggaagaacatgggaagtgaatggtgttcctaccaatgatagggtcatattatctgcagggtgggctgcttttctacggggtaaccaagtcaagaaaggagatgtttgctggcttgagctcgagagtaaaagcaagatggtggctcacataattcggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

106

Amino Acids

12.12

Weight (kDa)

9.78

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 94
AciI CCGC 2 cut(s) 78, 122
AcsI RAATTY 1 cut(s) 129
AfiI CCNNNNNNNGG 3 cut(s) 44, 94, 199
AgsI TTSAA 1 cut(s) 26
AluBI AGCT 2 cut(s) 3, 278
AluI AGCT 2 cut(s) 3, 278
Alw21I GWGCWC 1 cut(s) 280
Ama87I CYCGRG 2 cut(s) 4, 279
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 129
AvaI CYCGRG 2 cut(s) 4, 279
BanII GRGCYC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 212
BccI CCATC 1 cut(s) 290
BfaI CTAG 1 cut(s) 67
BfmI CTRYAG 1 cut(s) 214
BisI GCNGC 1 cut(s) 226
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 227
BmeT110I CYCGRG 2 cut(s) 4, 279
Bpu1102I GCTNAGC 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 94, 199
BseLI CCNNNNNNNGG 3 cut(s) 44, 94, 199
BseMII CTCAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 2 cut(s) 4, 279
BslI CCNNNNNNNGG 3 cut(s) 44, 94, 199
BsoBI CYCGRG 2 cut(s) 4, 279
Bsp1286I GDGCHC 1 cut(s) 280
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 2 cut(s) 78, 122
BspCNI CTCAG 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 16, 138
BstEII GGTNACC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstPI GGTNACC 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 270
CviAII CATG 1 cut(s) 169
CviJI RGCY 5 cut(s) 3, 225, 272, 278, 303
CviKI_1 RGCY 5 cut(s) 3, 225, 272, 278, 303
DdeI CTNAG 2 cut(s) 16, 138
Ecl136II GAGCTC 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 280
Eco53kI GAGCTC 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 4, 279
Eco91I GGTNACC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 1 cut(s) 172
FaiI YATR 4 cut(s) 76, 170, 207, 309
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 226
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 67
GluI GCNGC 1 cut(s) 226
GsaI CCCAGC 1 cut(s) 42
Hin1II CATG 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 60, 316
Hpy188III TCNNGA 3 cut(s) 6, 251, 281
HpyCH4V TGCA 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 16, 138
Hsp92II CATG 1 cut(s) 172
LpnPI CCDG 4 cut(s) 52, 127, 202, 254
Lsp1109I GCAGC 1 cut(s) 212
MaeI CTAG 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 240
MboII GAAGA 2 cut(s) 162, 175
MhlI GDGCHC 1 cut(s) 280
MluCI AATT 2 cut(s) 129, 310
MnlI CCTC 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 222
NlaIII CATG 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 94
PkrI GCNGC 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 280
PspEI GGTNACC 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 280
SatI GCNGC 1 cut(s) 226
SduI GDGCHC 1 cut(s) 280
SetI ASST 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 214
Sfr274I CTCGAG 1 cut(s) 279
SlaI CTCGAG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 273, 279
SmoI CTYRAG 2 cut(s) 273, 279
Sse9I AATT 2 cut(s) 129, 310
SsiI CCGC 2 cut(s) 78, 122
SspMI CTAG 1 cut(s) 67
SstI GAGCTC 1 cut(s) 280
TaqI TCGA 1 cut(s) 280
TasI AATT 2 cut(s) 129, 310
TscAI CASTG 1 cut(s) 49
TseI GCWGC 1 cut(s) 225
TspRI CASTG 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 94
XapI RAATTY 1 cut(s) 129
XhoI CTCGAG 1 cut(s) 279
XspI CTAG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.