Rw6G009330

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000235
Physical Location & Seq
Forward (+)
15637851 .. 15639829
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009330.1

Sequence Viewer

Length: 744 bp
ATGGCGAGAACAACATTCAACAATGGTGGTATGGAGGAAAAAAAGGGCCCTACGTTCTTCAAGATCATAAAAACCGGTTTCAACACTGAGGATTTGAGAATCCCACCCAAATTCCGGAGACACCTGTTGAATGAACTCTCCGACAGGGCAACTTTGAATTCAATGGATTCTTCAAATAGTTCATGGACTGTTGATGTGAGCCAAACAGAAGGGGAGATATATTTCAAGAATGGATGGCAGAAGTTTGTAAGAGATAACTCCTTAGGTAACTTTGAATTCTTAGTATTTAGGTATGAGAGCGATATGCAATTTAGCATTGAGATTTTTGACAGAAATGCGAGTAAGAGGATCACGTTTCCAGATGTCAGAACACACAGACGAGGTGAAAATTCAGTTAAAGAAGAGGAGGAAGATTACCAAGATAACAAAGAAGAAGAAGCTGCCACATTGCACAAAACTTTTACAAGCATTGTTGGACAAAACTTTTATAATTTGGCAGTTCCTACAGACTTTTCTATGAAGTACTTTCCTCTGGGATACTACACCATTGTCCTGAAAAATTCAGAGGCAAGAGAATGGGAAGTAAGCGTTGTGCCTAATGGGAAGGATGCTTCCTGTAATACGGTTAAACTTTCTGCAGGATGGGCTGCTTTTAGACGTGACAACCAAATCAACTCCGGAGATACTTGCACATTTGAGCTTGTGGAAAGCAAAACAATGTTGGTTCACATTGATCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

247

Amino Acids

28.55

Weight (kDa)

5.55

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 112 2.9e-15 B3 DNA binding domain
B3 PF02362 164 - 244 3.3e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AccIII TCCGGA 2 cut(s) 114, 677
AclWI GGATC 2 cut(s) 356, 728
AcsI RAATTY 5 cut(s) 110, 157, 275, 388, 559
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 74
AgsI TTSAA 9 cut(s) 19, 61, 82, 130, 157, 162, 174, 226, 275
AjiI CACGTC 1 cut(s) 659
AluBI AGCT 2 cut(s) 440, 700
AluI AGCT 2 cut(s) 440, 700
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 2 cut(s) 356, 728
Aor13HI TCCGGA 2 cut(s) 114, 677
AoxI GGCC 1 cut(s) 46
ApaI GGGCCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 440, 647
ApoI RAATTY 5 cut(s) 110, 157, 275, 388, 559
AsiGI ACCGGT 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 46, 47
AsuHPI GGTGA 1 cut(s) 395
AxyI CCTNAGG 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 427, 634
BccI CCATC 2 cut(s) 228, 636
BciVI GTATCC 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 112
BfmI CTRYAG 2 cut(s) 504, 636
BfuI GTATCC 1 cut(s) 530
BisI GCNGC 2 cut(s) 441, 648
BlsI GCNGC 2 cut(s) 442, 649
BmcAI AGTACT 1 cut(s) 524
BmgBI CACGTC 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 46, 47
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 1 cut(s) 598
BsaWI WCCGGW 3 cut(s) 74, 114, 677
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 74
Bse21I CCTNAGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 446
BseAI TCCGGA 2 cut(s) 114, 677
BseGI GGATG 3 cut(s) 239, 613, 647
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 50
BseXI GCAGC 2 cut(s) 427, 634
BshFI GGCC 1 cut(s) 48
BshTI ACCGGT 1 cut(s) 74
BsiSI CCGG 3 cut(s) 75, 115, 678
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 48
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 50
Bsp13I TCCGGA 2 cut(s) 114, 677
Bsp143I GATC 3 cut(s) 63, 348, 733
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 1 cut(s) 79
BspEI TCCGGA 2 cut(s) 114, 677
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 640
BspPI GGATC 2 cut(s) 356, 728
BsrDI GCAATG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 74
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 3 cut(s) 63, 348, 733
Bst4CI ACNGT 2 cut(s) 190, 625
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 4 cut(s) 87, 262, 280, 738
BstF5I GGATG 3 cut(s) 239, 613, 647
BstKTI GATC 3 cut(s) 66, 351, 736
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 3 cut(s) 63, 348, 733
BstMWI GCNNNNNNNGC 1 cut(s) 644
BstSFI CTRYAG 2 cut(s) 504, 636
BstSLI GKGCMC 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 427, 634
Bsu36I CCTNAGG 1 cut(s) 262
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 1 cut(s) 48
BtrI CACGTC 1 cut(s) 659
BtsCI GGATG 3 cut(s) 239, 613, 647
BtsIMutI CAGTG 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 46, 47
Csp6I GTAC 1 cut(s) 523
CspAI ACCGGT 1 cut(s) 74
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 183
CviJI RGCY 5 cut(s) 48, 201, 440, 647, 700
CviKI_1 RGCY 5 cut(s) 48, 201, 440, 647, 700
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 4 cut(s) 87, 262, 280, 738
DpnI GATC 3 cut(s) 65, 350, 735
DpnII GATC 3 cut(s) 63, 348, 733
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 262
EcoO109I RGGNCCY 2 cut(s) 46, 47
EcoRI GAATTC 2 cut(s) 157, 275
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 1 cut(s) 186
FaiI YATR 8 cut(s) 32, 68, 184, 220, 294, 305, 489, 518
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 441, 648
FokI GGATG 3 cut(s) 246, 620, 654
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 441, 648
GluI GCNGC 2 cut(s) 441, 648
HaeIII GGCC 1 cut(s) 48
HapII CCGG 3 cut(s) 75, 115, 678
Hin1II CATG 1 cut(s) 186
HinfI GANTC 2 cut(s) 99, 167
HpaII CCGG 3 cut(s) 75, 115, 678
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 727
Hpy188I TCNGA 3 cut(s) 142, 368, 565
Hpy188III TCNNGA 6 cut(s) 61, 115, 226, 359, 553, 678
Hpy8I GTNNAC 1 cut(s) 727
HpyAV CCTTC 2 cut(s) 203, 598
HpyCH4III ACNGT 2 cut(s) 190, 625
HpyCH4IV ACGT 3 cut(s) 53, 353, 658
HpyCH4V TGCA 4 cut(s) 307, 451, 638, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 644
HpyF3I CTNAG 4 cut(s) 87, 262, 280, 738
HpySE526I ACGT 3 cut(s) 53, 353, 658
Hsp92II CATG 1 cut(s) 186
Kpn2I TCCGGA 2 cut(s) 114, 677
Kzo9I GATC 3 cut(s) 63, 348, 733
Lsp1109I GCAGC 2 cut(s) 427, 634
LweI GCATC 1 cut(s) 598
MaeII ACGT 3 cut(s) 53, 353, 658
MaeIII GTNAC 2 cut(s) 266, 659
MalI GATC 3 cut(s) 65, 350, 735
MboI GATC 3 cut(s) 63, 348, 733
MboII GAAGA 6 cut(s) 49, 162, 413, 422, 443, 446
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 7 cut(s) 110, 157, 275, 308, 388, 490, 559
MmeI TCCRAC 2 cut(s) 165, 454
MnlI CCTC 8 cut(s) 28, 82, 339, 374, 397, 400, 540, 559
MroI TCCGGA 2 cut(s) 114, 677
MseI TTAA 2 cut(s) 396, 627
MspI CCGG 3 cut(s) 75, 115, 678
MwoI GCNNNNNNNGC 1 cut(s) 644
NdeII GATC 3 cut(s) 63, 348, 733
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 659
PfeI GAWTC 2 cut(s) 99, 167
PinAI ACCGGT 1 cut(s) 74
PkrI GCNGC 2 cut(s) 442, 649
PsiI TTATAA 1 cut(s) 489
PspN4I GGNNCC 1 cut(s) 48
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 46, 47
PstI CTGCAG 1 cut(s) 640
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SaqAI TTAA 2 cut(s) 396, 627
SatI GCNGC 2 cut(s) 441, 648
Sau3AI GATC 3 cut(s) 63, 348, 733
Sau96I GGNCC 2 cut(s) 46, 47
ScaI AGTACT 1 cut(s) 524
SduI GDGCHC 1 cut(s) 50
SetI ASST 9 cut(s) 56, 126, 268, 293, 356, 385, 442, 661, 702
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 2 cut(s) 504, 636
Sse9I AATT 7 cut(s) 110, 157, 275, 308, 388, 490, 559
TaaI ACNGT 2 cut(s) 190, 625
TaiI ACGT 3 cut(s) 56, 356, 661
TasI AATT 7 cut(s) 110, 157, 275, 308, 388, 490, 559
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 2 cut(s) 99, 167
Tru1I TTAA 2 cut(s) 396, 627
Tru9I TTAA 2 cut(s) 396, 627
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 2 cut(s) 440, 647
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 3 cut(s) 147, 171, 533
TspRI CASTG 1 cut(s) 91
XapI RAATTY 5 cut(s) 110, 157, 275, 388, 559
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.