FvH4_2g06970

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000235
Physical Location & Seq
Reverse (-)
5730876 .. 5733758
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06970.t1

Sequence Viewer

Length: 780 bp
ATGCAGAGGAGAGCATCCAAGGAGCCTACCTTCTTCAAGATTATCATAACTGGGTTTAACACTGATGATCTGAGAATCCCACCCAAGTTCCGAAGACACATGTTAAATGAACTTTCTGAAACGACAACTTTGGAGTTGAGGGGTTCTTCAAAATGTTCATGGATTGTTCAAGTGAGTCAAATAGAAGGGGATATATATTTAAAGGATGGATGGCAGAAGTTTATAAAAGATAACTCCTTGGGCGATTATGAGTTTTTAGTATTTAGGTATGAGAGAGCTATGCATTTTACAATAGATATCTTTGACGAGACAGGATGCATGAGAAACAATTTTCTGAAAAAATCCACAGGGGCTGACAATACGAAAAGACCTCGGGGAAGAGCAAGAAAGTACAACCATTCAGCTGCTGTTGAAAACATTCGAAGTTGCCAGTCCACTGAACTGGTAGAGATTAAAGAAGAGGAAATAGAAGAGGAAGCTGCTACATCGCATAATTCTGGGTTCCCTTCTTTTGCAAGTATTATGCTGAATCACTTGTATAATGTGTCAGTTCCAACAGACTTCAGTAAGAAACATCTTCCTCAGGGCTACTATAGCATTGTGGTGAAAAATTCAAAGGGACAAAAATGGAAAGTGAAAGTCGTCCGTTCTTGTACTTCAGTTAAACTTTCTGGAGGGTGGGCAGAGTTTAGACGTGCTAATCAAATCAAGTGCGGAGATATTTGCACATTTAAGCTCGTGGAAAGAAAGACCTTGGTGGTTCACGTTGTTCCGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

260

Amino Acids

29.87

Weight (kDa)

9.43

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 11 - 103 3.5e-15 B3 DNA binding domain
B3 PF02362 181 - 257 2.2e-16 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 224
AciI CCGC 1 cut(s) 714
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 2 cut(s) 547, 642
AfaI GTAC 2 cut(s) 392, 655
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 5 cut(s) 37, 150, 170, 413, 615
AjiI CACGTC 1 cut(s) 695
AluBI AGCT 4 cut(s) 278, 404, 479, 736
AluI AGCT 4 cut(s) 278, 404, 479, 736
Alw26I GTCTC 1 cut(s) 302
AlwNI CAGNNNCTG 2 cut(s) 353, 407
Ama87I CYCGRG 1 cut(s) 372
ApeKI GCWGC 2 cut(s) 404, 479
ApoI RAATTY 1 cut(s) 610
Asp700I GAANNNNTTC 1 cut(s) 417
AsuHPI GGTGA 1 cut(s) 616
AsuII TTCGAA 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 372
AxyI CCTNAGG 1 cut(s) 582
BauI CACGAG 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 2 cut(s) 391, 466
BccI CCATC 2 cut(s) 200, 204
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 592
BisI GCNGC 2 cut(s) 405, 480
BlsI GCNGC 2 cut(s) 406, 481
BmeT110I CYCGRG 1 cut(s) 372
BmgBI CACGTC 1 cut(s) 695
BmiI GGNNCC 2 cut(s) 24, 503
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 23, 305
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 693
Bpu14I TTCGAA 1 cut(s) 421
BsaJI CCNNGG 4 cut(s) 18, 237, 371, 753
Bse1I ACTGG 3 cut(s) 55, 430, 447
Bse21I CCTNAGG 1 cut(s) 582
BseDI CCNNGG 4 cut(s) 18, 237, 371, 753
BseGI GGATG 4 cut(s) 14, 211, 215, 320
BseMII CTCAG 2 cut(s) 62, 596
BseNI ACTGG 3 cut(s) 55, 430, 447
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 391, 466
BsiHKCI CYCGRG 1 cut(s) 372
BslFI GGGAC 1 cut(s) 633
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 633
BsoBI CYCGRG 1 cut(s) 372
Bsp119I TTCGAA 1 cut(s) 421
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 1 cut(s) 714
BspCNI CTCAG 2 cut(s) 63, 595
BspLI GGNNCC 2 cut(s) 24, 503
BspQI GCTCTTC 1 cut(s) 373
BspT104I TTCGAA 1 cut(s) 421
BsrI ACTGG 3 cut(s) 55, 430, 447
BssECI CCNNGG 4 cut(s) 18, 237, 371, 753
BssMI GATC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 3 cut(s) 18, 237, 753
Bst2BI CACGAG 1 cut(s) 737
Bst6I CTCTTC 3 cut(s) 373, 453, 465
BstBI TTCGAA 1 cut(s) 421
BstDEI CTNAG 2 cut(s) 71, 582
BstF5I GGATG 4 cut(s) 14, 211, 215, 320
BstKTI GATC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 592
BstV1I GCAGC 2 cut(s) 391, 466
BstV2I GAAGAC 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 442
Bsu36I CCTNAGG 1 cut(s) 582
BtgZI GCGATG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 695
BtsCI GGATG 4 cut(s) 14, 211, 215, 320
BtsIMutI CAGTG 2 cut(s) 60, 435
CaiI CAGNNNCTG 2 cut(s) 353, 407
Csp6I GTAC 2 cut(s) 391, 654
CviAII CATG 3 cut(s) 100, 159, 319
CviJI RGCY 7 cut(s) 25, 278, 353, 404, 479, 588, 736
CviKI_1 RGCY 7 cut(s) 25, 278, 353, 404, 479, 588, 736
CviQI GTAC 2 cut(s) 391, 654
DdeI CTNAG 2 cut(s) 71, 582
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
DraI TTTAAA 1 cut(s) 201
Eam1104I CTCTTC 3 cut(s) 373, 453, 465
EarI CTCTTC 3 cut(s) 373, 453, 465
Eco130I CCWWGG 3 cut(s) 18, 237, 753
Eco32I GATATC 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 547, 642
Eco81I CCTNAGG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 372
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 3 cut(s) 18, 237, 753
EcoT22I ATGCAT 2 cut(s) 285, 320
ErhI CCWWGG 3 cut(s) 18, 237, 753
FaeI CATG 3 cut(s) 103, 162, 322
FaqI GGGAC 1 cut(s) 633
FatI CATG 3 cut(s) 99, 158, 318
Fnu4HI GCNGC 2 cut(s) 405, 480
FokI GGATG 3 cut(s) 218, 222, 327
Fsp4HI GCNGC 2 cut(s) 405, 480
GluI GCNGC 2 cut(s) 405, 480
GsuI CTGGAG 1 cut(s) 693
Hin1II CATG 3 cut(s) 103, 162, 322
HinfI GANTC 3 cut(s) 75, 175, 529
HphI GGTGA 1 cut(s) 616
Hpy166II GTNNAC 2 cut(s) 435, 763
Hpy188I TCNGA 5 cut(s) 72, 92, 118, 336, 774
Hpy188III TCNNGA 2 cut(s) 37, 672
Hpy8I GTNNAC 2 cut(s) 435, 763
HpyAV CCTTC 3 cut(s) 40, 179, 516
HpyCH4IV ACGT 2 cut(s) 694, 765
HpyCH4V TGCA 5 cut(s) 4, 283, 318, 515, 726
HpyF10VI GCNNNNNNNGC 1 cut(s) 594
HpyF3I CTNAG 2 cut(s) 71, 582
HpySE526I ACGT 2 cut(s) 694, 765
Hsp92II CATG 3 cut(s) 103, 162, 322
Kzo9I GATC 1 cut(s) 67
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 8 cut(s) 36, 297, 333, 428, 443, 483, 569, 657
Lsp1109I GCAGC 2 cut(s) 391, 466
LweI GCATC 2 cut(s) 23, 305
MaeII ACGT 2 cut(s) 694, 765
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 7 cut(s) 25, 105, 138, 390, 470, 482, 569
MluCI AATT 3 cut(s) 328, 493, 610
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 6 cut(s) 132, 381, 454, 466, 591, 668
Mph1103I ATGCAT 2 cut(s) 285, 320
MroXI GAANNNNTTC 1 cut(s) 417
MseI TTAA 6 cut(s) 57, 104, 200, 453, 663, 732
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 594
NdeII GATC 1 cut(s) 67
NlaIII CATG 3 cut(s) 103, 162, 322
NlaIV GGNNCC 2 cut(s) 24, 503
NsiI ATGCAT 2 cut(s) 285, 320
NspI RCATGY 1 cut(s) 103
NspV TTCGAA 1 cut(s) 421
PciI ACATGT 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 417
PfeI GAWTC 2 cut(s) 75, 529
PkrI GCNGC 2 cut(s) 406, 481
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PscI ACATGT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 224
PspN4I GGNNCC 2 cut(s) 24, 503
PstNI CAGNNNCTG 2 cut(s) 353, 407
PvuII CAGCTG 1 cut(s) 404
RsaI GTAC 2 cut(s) 392, 655
RsaNI GTAC 2 cut(s) 391, 654
RseI CAYNNNNRTG 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 373
SaqAI TTAA 6 cut(s) 57, 104, 200, 453, 663, 732
SatI GCNGC 2 cut(s) 405, 480
Sau3AI GATC 1 cut(s) 67
SchI GAGTC 1 cut(s) 184
SfaNI GCATC 2 cut(s) 23, 305
SfcI CTRYAG 1 cut(s) 592
SfuI TTCGAA 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 602
Sse9I AATT 3 cut(s) 328, 493, 610
SsiI CCGC 1 cut(s) 714
StyI CCWWGG 3 cut(s) 18, 237, 753
TaiI ACGT 2 cut(s) 697, 768
TaqI TCGA 1 cut(s) 421
TasI AATT 3 cut(s) 328, 493, 610
TatI WGTACW 2 cut(s) 390, 653
TfiI GAWTC 2 cut(s) 75, 529
Tru1I TTAA 6 cut(s) 57, 104, 200, 453, 663, 732
Tru9I TTAA 6 cut(s) 57, 104, 200, 453, 663, 732
TscAI CASTG 2 cut(s) 67, 442
TseI GCWGC 2 cut(s) 404, 479
TspDTI ATGAA 2 cut(s) 123, 147
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 2 cut(s) 67, 442
XapI RAATTY 1 cut(s) 610
XceI RCATGY 1 cut(s) 103
XmnI GAANNNNTTC 1 cut(s) 417
Zsp2I ATGCAT 2 cut(s) 285, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.