RchiOBHm_Chr6g0259251

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000235
Physical Location & Seq
Reverse (-)
14525111 .. 14526145
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23244

Sequence Viewer

Length: 726 bp
ATGTGCACTTATAAATTATCTATGAACTACATAATTCTGAAACTTCAGTTTCTGTTTTTGTATGTGTTCTTGAAGAGGATTCCACCGCACTTCCTAGAGCATGGTAGAAATGACCAACCTGAAAGGGCAACTTTGACATGGAACATGTCTTTAGAGCGTTCGTGGACTGTCAAAGTGTGCAGAACAAAAGAATGTGTGTATTTCAAGGATGGGTGGCGGAATTTTTTAAATGATAACTCAGTGAAGGAAGGTGACTTCCTAGTGTTCACCTATGAAGGGGAGATGCATTTCAGCATACATGATTACGAAAATAATTGTTGCAAGAGAGGCGATTTTCCTACTAATAATGAACCACACGAAGAATCTGCCCCTGCTAAGAGTACTAAAAGGAATCCTGGTAGTCCAAAGAAAGATTATTCAGCTGAATCTTTCCGGTCCAAGTTTCCTCATTACACAAGATCTATCAAGAAAAAATATTGTGTGTACTCAATTCCCACAGCCTTCTATAGGAAGTATCTTTCTGCACGCAACTATGAAGTTGCTTTCCTGAAGATTTCAGGGGGAACCAAATGGTACAAAGTGAAGCTTGTCCCTTCCCTTCAAACAGCCTTCATGTCTAAAGGGTGGTCTGTGTTTGCGCATGATAACCAAATCGTGGTTGGAGATGTTTGCGCTTTCGAGCTCTTGAAAGAGAACAAAATGGTGGTTCACATTCTCCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

241

Amino Acids

28.43

Weight (kDa)

9.41

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 26 - 97 3.3e-15 B3 DNA binding domain
B3 PF02362 157 - 241 6.6e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 639
AccB7I CCANNNNNTGG 1 cut(s) 655
AccIII TCCGGA 1 cut(s) 717
AciI CCGC 2 cut(s) 86, 217
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 2 cut(s) 29, 569
AfaI GTAC 3 cut(s) 382, 485, 575
AfiI CCNNNNNNNGG 3 cut(s) 276, 507, 655
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 4 cut(s) 73, 205, 602, 688
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 3 cut(s) 422, 586, 682
AluI AGCT 3 cut(s) 422, 586, 682
Alw21I GWGCWC 2 cut(s) 8, 684
Alw44I GTGCAC 1 cut(s) 4
AlwNI CAGNNNCTG 1 cut(s) 52
Aor13HI TCCGGA 1 cut(s) 717
ApaLI GTGCAC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 220
AspLEI GCGC 2 cut(s) 640, 674
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 259, 263
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 684
Bbv12I GWGCWC 2 cut(s) 8, 684
BccI CCATC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 396
BfaI CTAG 2 cut(s) 95, 260
BfmI CTRYAG 1 cut(s) 505
BglII AGATCT 1 cut(s) 458
BmcAI AGTACT 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 565
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 432, 717
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 507, 655
BseAI TCCGGA 1 cut(s) 717
BseBI CCWGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 276, 507, 655
BseMII CTCAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 8
BsgI GTGCAG 2 cut(s) 199, 507
BsiHKAI GWGCWC 2 cut(s) 8, 684
BsiSI CCGG 2 cut(s) 433, 718
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 3 cut(s) 276, 507, 655
BsmFI GGGAC 1 cut(s) 575
Bsp1286I GDGCHC 2 cut(s) 8, 684
Bsp13I TCCGGA 1 cut(s) 717
Bsp143I GATC 1 cut(s) 458
BspACI CCGC 2 cut(s) 86, 217
BspCNI CTCAG 1 cut(s) 251
BspEI TCCGGA 1 cut(s) 717
BspLI GGNNCC 1 cut(s) 565
BssMI GATC 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 2 cut(s) 238, 375
BstENI CCTNNNNNAGG 1 cut(s) 505
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 2 cut(s) 640, 674
BstKTI GATC 1 cut(s) 461
BstMBI GATC 1 cut(s) 458
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 1 cut(s) 396
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 505
BstSLI GKGCMC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 526
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 2 cut(s) 640, 674
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 3 cut(s) 381, 484, 574
CviAII CATG 6 cut(s) 101, 138, 145, 299, 613, 641
CviJI RGCY 5 cut(s) 422, 500, 586, 608, 682
CviKI_1 RGCY 5 cut(s) 422, 500, 586, 608, 682
CviQI GTAC 3 cut(s) 381, 484, 574
DdeI CTNAG 2 cut(s) 238, 375
DpnI GATC 1 cut(s) 460
DpnII GATC 1 cut(s) 458
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
EciI GGCGGA 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 682
Eco24I GRGCYC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 682
Eco57I CTGAAG 2 cut(s) 29, 569
EcoICRI GAGCTC 1 cut(s) 682
EcoNI CCTNNNNNAGG 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 684
FaeI CATG 6 cut(s) 104, 141, 148, 302, 616, 644
FalI AAGNNNNNCTT 4 cut(s) 115, 147, 570, 602
FaqI GGGAC 1 cut(s) 575
FatI CATG 6 cut(s) 100, 137, 144, 298, 612, 640
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 684
FspBI CTAG 2 cut(s) 95, 260
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 2 cut(s) 639, 673
HapII CCGG 2 cut(s) 433, 718
HhaI GCGC 2 cut(s) 640, 674
Hin1II CATG 6 cut(s) 104, 141, 148, 302, 616, 644
Hin6I GCGC 2 cut(s) 638, 672
HinP1I GCGC 2 cut(s) 638, 672
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 4 cut(s) 79, 362, 391, 425
HpaII CCGG 2 cut(s) 433, 718
HphI GGTGA 2 cut(s) 259, 263
Hpy166II GTNNAC 5 cut(s) 6, 165, 267, 484, 709
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 5 cut(s) 70, 466, 547, 685, 718
Hpy8I GTNNAC 5 cut(s) 6, 165, 267, 484, 709
HpyAV CCTTC 7 cut(s) 238, 242, 269, 511, 603, 608, 619
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 5 cut(s) 6, 180, 286, 321, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 2 cut(s) 238, 375
Hsp92II CATG 6 cut(s) 104, 141, 148, 302, 616, 644
HspAI GCGC 2 cut(s) 638, 672
Kpn2I TCCGGA 1 cut(s) 717
Kzo9I GATC 1 cut(s) 458
LpnPI CCDG 7 cut(s) 132, 381, 384, 408, 446, 543, 560
LweI GCATC 1 cut(s) 273
MaeI CTAG 2 cut(s) 95, 260
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 460
MboI GATC 1 cut(s) 458
MboII GAAGA 3 cut(s) 85, 371, 562
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 2 cut(s) 8, 684
MluCI AATT 5 cut(s) 14, 33, 220, 313, 489
MmeI TCCRAC 1 cut(s) 640
MnlI CCTC 3 cut(s) 69, 320, 456
Mph1103I ATGCAT 1 cut(s) 288
MroI TCCGGA 1 cut(s) 717
MseI TTAA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 433, 718
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 1 cut(s) 458
NlaIII CATG 6 cut(s) 104, 141, 148, 302, 616, 644
NlaIV GGNNCC 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 251
NsbI TGCGCA 1 cut(s) 639
NsiI ATGCAT 1 cut(s) 288
NspI RCATGY 1 cut(s) 148
PciI ACATGT 1 cut(s) 144
PfeI GAWTC 4 cut(s) 79, 362, 391, 425
PflMI CCANNNNNTGG 1 cut(s) 655
PscI ACATGT 1 cut(s) 144
PsiI TTATAA 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 684
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 565
PspPI GGNCC 1 cut(s) 435
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 3 cut(s) 382, 485, 575
RsaNI GTAC 3 cut(s) 381, 484, 574
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 1 cut(s) 227
Sau3AI GATC 1 cut(s) 458
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 2 cut(s) 8, 684
SetI ASST 6 cut(s) 121, 253, 272, 424, 588, 684
SfaNI GCATC 1 cut(s) 273
SfcI CTRYAG 1 cut(s) 505
SinI GGWCC 1 cut(s) 435
Sse9I AATT 5 cut(s) 14, 33, 220, 313, 489
SsiI CCGC 2 cut(s) 86, 217
SspI AATATT 1 cut(s) 476
SspMI CTAG 2 cut(s) 95, 260
SstI GAGCTC 1 cut(s) 684
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 678
TasI AATT 5 cut(s) 14, 33, 220, 313, 489
TatI WGTACW 2 cut(s) 380, 483
TfiI GAWTC 4 cut(s) 79, 362, 391, 425
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 5 cut(s) 38, 288, 363, 549, 601
TspRI CASTG 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 655
VneI GTGCAC 1 cut(s) 4
VpaK11BI GGWCC 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 505
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 148
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XspI CTAG 2 cut(s) 95, 260
ZrmI AGTACT 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.