Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000235

Physical Location & Seq

Genomic Coordinates Forward (+)

57062417 .. 57076629

Gene Structure 14213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00207160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGTGAAGATATCCAGGAATGGTGTTGAGGAGAAAAAGCCTAGCTTCTTCAAGGTTATTCTACCTGGCTACAGCACTGAGCATTTGAGAATCCCACCGAGATTCCTCCGGAAGCACACTGTGAACAAACTTTCTAAAAGGGCAACACTAAAGTTGAAGCGATCCCCAGAGTGGTCATGGAAGGTTGAAGTGAGAAAATCGGGAGGAGATGTGTATTTGAAAGATGGATGGCAGGAGTTTCTGAGAGATGCCTGCTTGGGTGACAAAGAGTTTTTAGTGTTCATATACAACGGAAAAATGCGTTTCGGCATAAAGGTTTACGACAAGAATGGGTGTGAGAGAATGGATTTCCCTGACATCAAAACACACCGACACACAACCTCATCTAGGAGTACTAAAAGGCCTGTTAGGAGACCAAGAAAATCTAGCACAGGCAATTCAGCTGATAAGCTCAAAGAGGTTAAAGAAGAGGAAGTAGATTGCAATAACACTACAGACAAATGCGCTTCTAAGAGTACTGAAATGCTTCGTGGTAGACCAACAAAAATTACGGAGGAGTATACCAAGAGGGGTCTCGGCAGACCAACAAAACCTGCCTCTAAGAGTACCAAGAGGCCTCCTGTTAGAGCAACAAAAAAAACTTCTGAGAGTACTAAGAGGCCTCCTGTTACACCAGCAAAAACTACTTTTGAGAGTACTAAGAGGCCTCGTGGTAGACCAAGAAAATATCCTGTCACGTGTAAAGACTCGGCTGCAGGTAAGCACATTCCAAATTCTGAATTTGATGTACTCAGAAAGGTCAAAGAAGGGGAAGAAGATTACCAAGAATCTGGTGAACTGTTCAAATCCAAATTGCAATACTTTACATGCAAAATCAACAGGCTAAGTCAAGTGTACATGCCCAAACCGTTCTATGGGGAAAATCTTTCTTCAGGAAACTATGAAGTTATTTACCTGAAAAATTCTGAGGGAACAAAATGGTACAAAGTGAAGCTTTCCCGTTACCGTAACACGGCCTTCATGACTAAAGGGTGGGGTGCTTTTGCAGTTGCTAACCAAGTCAAGGTGGGCAGTCTGTGCCAATTTCAGTTCCTAAAGGAAAACAGAATTGTTGTTCACATATTGAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016553 GO:0016554 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

377

Amino Acids

43.55

Weight (kDa)

10.06

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	16 - 107	3.4e-15	B3 DNA binding domain
B3	PF02362	293 - 376	8.4e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000235)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica	MD05G1072700.v1.1
prunus_persica	Prupe.8G113100_v2.0.a1
pyrus_communis	pycom05g06500 pycom10g06950
rosa_chinensis	RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata	RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora	Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii	Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa	Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha	Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana	Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	601, 746
AccI	GTMKAC	3 cut(s)	535, 560, 715
AccIII	TCCGGA	1 cut(s)	108
AclWI	GGATC	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	772, 779, 961
AcuI	CTGAAG	1 cut(s)	915
AcvI	CACGTG	1 cut(s)	738
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	8 cut(s)	394, 517, 607, 652, 697, 789, 896, 983
AfiI	CCNNNNNNNGG	5 cut(s)	171, 387, 914, 1012, 1063
AflIII	ACRYGT	1 cut(s)	737
AgsI	TTSAA	6 cut(s)	52, 157, 188, 220, 844, 1126
AjnI	CCWGG	2 cut(s)	14, 64
AluBI	AGCT	4 cut(s)	45, 443, 451, 994
AluI	AGCT	4 cut(s)	45, 443, 451, 994
Alw26I	GTCTC	2 cut(s)	406, 578
AlwI	GGATC	1 cut(s)	156
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	5 cut(s)	401, 614, 659, 704, 1014
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	3 cut(s)	772, 779, 961
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	16, 272, 845
BauI	CACGAG	1 cut(s)	708
BbrPI	CACGTG	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	2 cut(s)	218, 222
BceAI	ACGGC	1 cut(s)	1029
BciT130I	CCWGG	2 cut(s)	16, 66
BcoDI	GTCTC	2 cut(s)	406, 578
BfaI	CTAG	3 cut(s)	42, 387, 426
BfmI	CTRYAG	3 cut(s)	70, 492, 753
BfuAI	ACCTGC	2 cut(s)	601, 746
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
BmcAI	AGTACT	4 cut(s)	394, 517, 652, 697
Bme1390I	CCNGG	2 cut(s)	16, 66
BmrFI	CCNGG	2 cut(s)	16, 66
BmsI	GCATC	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	738
BsaI	GGTCTC	2 cut(s)	406, 578
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 387, 914, 1012, 1063
BseAI	TCCGGA	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	16, 66
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	5 cut(s)	171, 387, 914, 1012, 1063
BseMII	CTCAG	5 cut(s)	69, 233, 636, 805, 957
BseRI	GAGGAG	3 cut(s)	44, 219, 569
BseXI	GCAGC	1 cut(s)	739
BshFI	GGCC	5 cut(s)	403, 616, 661, 706, 1016
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	5 cut(s)	171, 387, 914, 1012, 1063
BsmAI	GTCTC	2 cut(s)	406, 578
BsnI	GGCC	5 cut(s)	403, 616, 661, 706, 1016
Bso31I	GGTCTC	2 cut(s)	406, 578
Bsp13I	TCCGGA	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	5 cut(s)	403, 616, 661, 706, 1016
BspCNI	CTCAG	5 cut(s)	70, 234, 637, 804, 958
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	1020
BspMAI	CTGCAG	1 cut(s)	757
BspMI	ACCTGC	2 cut(s)	601, 746
BspPI	GGATC	1 cut(s)	156
BspTNI	GGTCTC	2 cut(s)	406, 578
BsrGI	TGTACA	1 cut(s)	894
BssMI	GATC	1 cut(s)	161
BssNAI	GTATAC	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	708
Bst1107I	GTATAC	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	708
Bst2UI	CCWGG	2 cut(s)	16, 66
Bst4CI	ACNGT	4 cut(s)	121, 840, 909, 1007
Bst6I	CTCTTC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	1077
BstAUI	TGTACA	1 cut(s)	894
BstBAI	YACGTR	1 cut(s)	738
BstC8I	GCNNGC	1 cut(s)	253
BstENI	CCTNNNNNAGG	1 cut(s)	385
BstF5I	GGATG	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	2 cut(s)	406, 578
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	1077
BstNI	CCWGG	2 cut(s)	16, 66
BstNSI	RCATGY	2 cut(s)	870, 901
BstSCI	CCNGG	2 cut(s)	14, 64
BstSFI	CTRYAG	3 cut(s)	70, 492, 753
BstV1I	GCAGC	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	830
BstZ17I	GTATAC	1 cut(s)	561
BsuRI	GGCC	5 cut(s)	403, 616, 661, 706, 1016
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	75, 117
BveI	ACCTGC	2 cut(s)	601, 746
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	1020
CfoI	GCGC	1 cut(s)	506
Csp6I	GTAC	8 cut(s)	393, 516, 606, 651, 696, 788, 895, 982
CviAII	CATG	4 cut(s)	177, 867, 898, 1021
CviQI	GTAC	8 cut(s)	393, 516, 606, 651, 696, 788, 895, 982
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
DraIII	CACNNNGTG	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco147I	AGGCCT	4 cut(s)	403, 616, 661, 706
Eco31I	GGTCTC	2 cut(s)	406, 578
Eco32I	GATATC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	915
Eco72I	CACGTG	1 cut(s)	738
EcoNI	CCTNNNNNAGG	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	14, 64
EcoRV	GATATC	1 cut(s)	12
FaeI	CATG	4 cut(s)	180, 870, 901, 1024
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 978, 1010
FatI	CATG	4 cut(s)	176, 866, 897, 1020
FblI	GTMKAC	3 cut(s)	535, 560, 715
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	753
FspBI	CTAG	3 cut(s)	42, 387, 426
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	1 cut(s)	753
HaeIII	GGCC	5 cut(s)	403, 616, 661, 706, 1016
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	4 cut(s)	180, 870, 901, 1024
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	992
HinfI	GANTC	4 cut(s)	90, 102, 746, 827
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	3 cut(s)	16, 272, 845
Hpy166II	GTNNAC	8 cut(s)	124, 319, 536, 561, 716, 836, 895, 1117
Hpy188I	TCNGA	5 cut(s)	243, 646, 778, 794, 967
Hpy188III	TCNNGA	4 cut(s)	109, 201, 933, 1021
Hpy8I	GTNNAC	8 cut(s)	124, 319, 536, 561, 716, 836, 895, 1117
HpyAV	CCTTC	3 cut(s)	175, 800, 1027
HpyCH4III	ACNGT	4 cut(s)	121, 840, 909, 1007
HpyCH4IV	ACGT	1 cut(s)	737
HpyCH4V	TGCA	5 cut(s)	483, 755, 856, 870, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1077
HpySE526I	ACGT	1 cut(s)	737
Hsp92II	CATG	4 cut(s)	180, 870, 901, 1024
HspAI	GCGC	1 cut(s)	504
Kpn2I	TCCGGA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	42, 387, 426
MaeII	ACGT	1 cut(s)	737
MaeIII	GTNAC	5 cut(s)	260, 667, 733, 1001, 1007
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	6 cut(s)	19, 40, 479, 824, 827, 921
MluCI	AATT	8 cut(s)	436, 546, 772, 779, 851, 961, 1082, 1107
MlyI	GAGTC	1 cut(s)	740
MroI	TCCGGA	1 cut(s)	108
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	2 cut(s)	16, 66
MvaI	CCWGG	2 cut(s)	16, 66
MwoI	GCNNNNNNNGC	1 cut(s)	1077
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	180, 870, 901, 1024
NmeAIII	GCCGAG	2 cut(s)	555, 728
NmuCI	GTSAC	2 cut(s)	260, 733
NspI	RCATGY	2 cut(s)	870, 901
PagI	TCATGA	1 cut(s)	1020
PceI	AGGCCT	4 cut(s)	403, 616, 661, 706
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	90, 102, 827
PfoI	TCCNGGA	1 cut(s)	14
PkrI	GCNGC	1 cut(s)	754
PleI	GAGTC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	738
PmlI	CACGTG	1 cut(s)	738
PpsI	GAGTC	1 cut(s)	740
Ppu21I	YACGTR	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	14, 64
PspCI	CACGTG	1 cut(s)	738
PspGI	CCWGG	2 cut(s)	14, 64
PstI	CTGCAG	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	8 cut(s)	394, 517, 607, 652, 697, 789, 896, 983
RsaNI	GTAC	8 cut(s)	393, 516, 606, 651, 696, 788, 895, 982
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	1 cut(s)	161
ScaI	AGTACT	4 cut(s)	394, 517, 652, 697
SchI	GAGTC	1 cut(s)	740
ScrFI	CCNGG	2 cut(s)	16, 66
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	3 cut(s)	70, 492, 753
Sse9I	AATT	8 cut(s)	436, 546, 772, 779, 851, 961, 1082, 1107
SseBI	AGGCCT	4 cut(s)	403, 616, 661, 706
SspMI	CTAG	3 cut(s)	42, 387, 426
StuI	AGGCCT	4 cut(s)	403, 616, 661, 706
StyD4I	CCNGG	2 cut(s)	14, 64
TaaI	ACNGT	4 cut(s)	121, 840, 909, 1007
TaiI	ACGT	1 cut(s)	740
TasI	AATT	8 cut(s)	436, 546, 772, 779, 851, 961, 1082, 1107
TatI	WGTACW	6 cut(s)	392, 515, 650, 695, 787, 894
TfiI	GAWTC	3 cut(s)	90, 102, 827
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	82, 124
TseFI	GTSAC	2 cut(s)	260, 733
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	2 cut(s)	260, 733
TspDTI	ATGAA	3 cut(s)	271, 957, 1009
TspGWI	ACGGA	2 cut(s)	306, 566
TspRI	CASTG	2 cut(s)	82, 124
XagI	CCTNNNNNAGG	1 cut(s)	385
XapI	RAATTY	3 cut(s)	772, 779, 961
XceI	RCATGY	2 cut(s)	870, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	174
XmiI	GTMKAC	3 cut(s)	535, 560, 715
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	42, 387, 426
ZrmI	AGTACT	4 cut(s)	394, 517, 652, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.