Prupe.8G113100_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000235
Physical Location & Seq
Reverse (-)
14164116 .. 14166903
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G113100.1

Sequence Viewer

Length: 954 bp
ATGGTGAGAAAAATATCCAAGAATGAAGAGAAGAAGCATTCATTTTTCAAGCTTCTCGCTGGTTTCAACACTGACTCTGTGCGTATCCCACAAAAGTTCTTGAAACATATGTTGAAGGACTTGTCGGAGAGAGCGATATTGAAACTGAAGGATTCGTCAGATTCTTCATGGACTGTTACAGTGAATAAGAGAAGAGAAGGTGCTGTGTATTTCAAGAATGGCTGGGAGGAGTTTATAAAGGATAACTCCTTGGGCACTGACAATGAGATGCTACAAATTTTCTATGAGGGAAAGATGCATTTCAGCATAAGGATTTTTGCCAAGAATGGGATCGAGAGAACTGAAGAACTTTCAAGTTCCGAGGAAGAGGAGGAAGATTCTGAAGACAACACATCTGAGGATTTGGAAGCTGATTTTACCAAGATTGGATCACTTCACAACTCCACCTTTGCTAAAAATACTACTAAAAGGCCTCGTGGTAGACCAAGAAAATACCCTGTGAGTTCTTCGAAGCCTTGTCCATCGAAGTCTTGCAAAGTTGAATCGGGTGAAGAACTTTCAAGTTCTGAATCCATTGAGCTCAATGAGATCAAAGAAGAGGAGGAAGATTCTGAAGACAGCACATCTGACGATTTGGACGGTGTTGAGCCTGAAGCTTTCAAATCTAACTTCCCTTATTATAAAGGCATCGTCAGACAAACTAAATGTCAGTTCATCCCCACAGCCTTCTCTAGGGAGCATTTTCCTCAAGGCAAAAGTTTTAAGGCTATGCTGAAAAATGCAGAGGGGGAAAAATGGACCGTGAATTGTATCCCTAATTCCCCTCAGTCACACAACTTTTCTGCAGGGTGGTATAAATTTGTATCTGCTAACCAAATCCGTATCGGGGATACTTGCATATTTGAGCTTTTGAGCCGGTACCAGATGATGGTTCACATTTTGAGGAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

318

Amino Acids

36.53

Weight (kDa)

6.24

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 236, 681
Acc65I GGTACC 1 cut(s) 918
AccB1I GGYRCC 1 cut(s) 918
AccB7I CCANNNNNTGG 1 cut(s) 928
AccI GTMKAC 1 cut(s) 481
AclWI GGATC 2 cut(s) 338, 436
AcsI RAATTY 2 cut(s) 276, 857
AcuI CTGAAG 5 cut(s) 167, 363, 402, 633, 672
AfaI GTAC 1 cut(s) 920
AfiI CCNNNNNNNGG 4 cut(s) 327, 732, 886, 928
AluBI AGCT 5 cut(s) 52, 410, 580, 656, 907
AluI AGCT 5 cut(s) 52, 410, 580, 656, 907
Alw21I GWGCWC 1 cut(s) 582
AlwI GGATC 2 cut(s) 338, 436
AoxI GGCC 1 cut(s) 470
ApoI RAATTY 2 cut(s) 276, 857
ArsI GACNNNNNNTTYG 2 cut(s) 691, 723
Asp718I GGTACC 1 cut(s) 918
AspS9I GGNCC 1 cut(s) 798
AsuHPI GGTGA 2 cut(s) 16, 560
AsuII TTCGAA 1 cut(s) 509
AvaII GGWCC 1 cut(s) 798
BaeGI GKGCMC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 918
BanII GRGCYC 1 cut(s) 582
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 390, 621
Bbv12I GWGCWC 1 cut(s) 582
BccI CCATC 2 cut(s) 529, 922
BciVI GTATCC 3 cut(s) 95, 821, 883
BfaI CTAG 1 cut(s) 732
BfmI CTRYAG 1 cut(s) 843
BfuI GTATCC 3 cut(s) 95, 821, 883
Bme18I GGWCC 1 cut(s) 798
BmgT120I GGNCC 1 cut(s) 798
BmiI GGNNCC 1 cut(s) 920
BmsI GCATC 3 cut(s) 258, 285, 696
BpiI GAAGAC 2 cut(s) 390, 621
Bpu14I TTCGAA 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 732
BsaJI CCNNGG 2 cut(s) 249, 360
Bsc4I CCNNNNNNNGG 4 cut(s) 327, 732, 886, 928
Bse118I RCCGGY 1 cut(s) 915
BseDI CCNNGG 2 cut(s) 249, 360
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 4 cut(s) 327, 732, 886, 928
BseMII CTCAG 2 cut(s) 387, 839
BseRI GAGGAG 3 cut(s) 242, 383, 614
BseSI GKGCMC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 222
BshFI GGCC 1 cut(s) 472
BshNI GGYRCC 1 cut(s) 918
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 1 cut(s) 916
BslI CCNNNNNNNGG 4 cut(s) 327, 732, 886, 928
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 1 cut(s) 472
Bsp119I TTCGAA 1 cut(s) 509
Bsp1286I GDGCHC 2 cut(s) 257, 582
Bsp143I GATC 3 cut(s) 330, 428, 588
BspANI GGCC 1 cut(s) 472
BspCNI CTCAG 2 cut(s) 388, 838
BspLI GGNNCC 1 cut(s) 920
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 2 cut(s) 338, 436
BspT104I TTCGAA 1 cut(s) 509
BspT107I GGYRCC 1 cut(s) 918
BsrFI RCCGGY 1 cut(s) 915
BssAI RCCGGY 1 cut(s) 915
BssECI CCNNGG 2 cut(s) 249, 360
BssMI GATC 3 cut(s) 330, 428, 588
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 474
Bst4CI ACNGT 4 cut(s) 175, 181, 641, 802
Bst6I CTCTTC 5 cut(s) 21, 187, 360, 591, 941
BstBI TTCGAA 1 cut(s) 509
BstDEI CTNAG 2 cut(s) 396, 825
BstENI CCTNNNNNAGG 1 cut(s) 730
BstF5I GGATG 1 cut(s) 714
BstKTI GATC 3 cut(s) 333, 431, 591
BstMBI GATC 3 cut(s) 330, 428, 588
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 257
BstV2I GAAGAC 2 cut(s) 390, 621
BsuI GTATCC 3 cut(s) 95, 821, 883
BsuRI GGCC 1 cut(s) 472
BtsCI GGATG 1 cut(s) 714
BtsIMutI CAGTG 3 cut(s) 69, 186, 255
Cfr10I RCCGGY 1 cut(s) 915
Cfr13I GGNCC 1 cut(s) 798
Csp6I GTAC 1 cut(s) 919
CviAII CATG 1 cut(s) 168
CviQI GTAC 1 cut(s) 919
DdeI CTNAG 2 cut(s) 396, 825
DpnI GATC 3 cut(s) 332, 430, 590
DpnII GATC 3 cut(s) 330, 428, 588
Eam1104I CTCTTC 5 cut(s) 21, 187, 360, 591, 941
EarI CTCTTC 5 cut(s) 21, 187, 360, 591, 941
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 249
Eco147I AGGCCT 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 798
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 5 cut(s) 167, 363, 402, 633, 672
EcoICRI GAGCTC 1 cut(s) 580
EcoNI CCTNNNNNAGG 1 cut(s) 730
EcoT14I CCWWGG 1 cut(s) 249
EcoT22I ATGCAT 1 cut(s) 300
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 1 cut(s) 171
FatI CATG 1 cut(s) 167
FauNDI CATATG 1 cut(s) 108
FblI GTMKAC 1 cut(s) 481
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 582
FspBI CTAG 1 cut(s) 732
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 472
HapII CCGG 1 cut(s) 916
Hin1II CATG 1 cut(s) 171
HindIII AAGCTT 2 cut(s) 50, 654
HinfI GANTC 7 cut(s) 74, 152, 161, 377, 542, 569, 608
HpaII CCGG 1 cut(s) 916
HphI GGTGA 2 cut(s) 16, 560
Hpy166II GTNNAC 2 cut(s) 482, 934
Hpy188I TCNGA 9 cut(s) 127, 160, 361, 382, 397, 568, 613, 628, 695
Hpy188III TCNNGA 3 cut(s) 100, 214, 334
Hpy8I GTNNAC 2 cut(s) 482, 934
HpyAV CCTTC 4 cut(s) 109, 142, 191, 736
HpyCH4III ACNGT 4 cut(s) 175, 181, 641, 802
HpyCH4V TGCA 5 cut(s) 298, 534, 782, 845, 897
HpyF3I CTNAG 2 cut(s) 396, 825
Hsp92II CATG 1 cut(s) 171
KpnI GGTACC 1 cut(s) 922
Kzo9I GATC 3 cut(s) 330, 428, 588
LmnI GCTCC 1 cut(s) 736
LpnPI CCDG 7 cut(s) 45, 208, 510, 663, 831, 929, 935
LweI GCATC 3 cut(s) 258, 285, 696
MaeI CTAG 1 cut(s) 732
MaeIII GTNAC 2 cut(s) 175, 828
MalI GATC 3 cut(s) 332, 430, 590
MboI GATC 3 cut(s) 330, 428, 588
MhlI GDGCHC 2 cut(s) 257, 582
MluCI AATT 4 cut(s) 276, 805, 817, 857
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 300
MseI TTAA 1 cut(s) 762
MspI CCGG 1 cut(s) 916
Mva1269I GAATGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 108
NdeII GATC 3 cut(s) 330, 428, 588
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 920
NmuCI GTSAC 1 cut(s) 828
NsiI ATGCAT 1 cut(s) 300
NspV TTCGAA 1 cut(s) 509
PceI AGGCCT 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PctI GAATGC 1 cut(s) 37
PfeI GAWTC 6 cut(s) 152, 161, 377, 542, 569, 608
PflMI CCANNNNNTGG 1 cut(s) 928
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PsiI TTATAA 2 cut(s) 236, 681
Psp124BI GAGCTC 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 920
PspPI GGNCC 1 cut(s) 798
PstI CTGCAG 1 cut(s) 847
RsaI GTAC 1 cut(s) 920
RsaNI GTAC 1 cut(s) 919
SacI GAGCTC 1 cut(s) 582
SaqAI TTAA 1 cut(s) 762
Sau3AI GATC 3 cut(s) 330, 428, 588
Sau96I GGNCC 1 cut(s) 798
SchI GAGTC 1 cut(s) 68
SduI GDGCHC 2 cut(s) 257, 582
SetI ASST 7 cut(s) 54, 202, 412, 449, 582, 658, 909
SfaNI GCATC 3 cut(s) 258, 285, 696
SfcI CTRYAG 1 cut(s) 843
SfuI TTCGAA 1 cut(s) 509
SinI GGWCC 1 cut(s) 798
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
Sse9I AATT 4 cut(s) 276, 805, 817, 857
SseBI AGGCCT 1 cut(s) 472
SspMI CTAG 1 cut(s) 732
SstI GAGCTC 1 cut(s) 582
StuI AGGCCT 1 cut(s) 472
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 4 cut(s) 175, 181, 641, 802
TaqI TCGA 3 cut(s) 333, 509, 524
TasI AATT 4 cut(s) 276, 805, 817, 857
TfiI GAWTC 6 cut(s) 152, 161, 377, 542, 569, 608
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 3 cut(s) 76, 186, 262
TseFI GTSAC 1 cut(s) 828
Tsp45I GTSAC 1 cut(s) 828
TspDTI ATGAA 4 cut(s) 30, 39, 156, 703
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 3 cut(s) 76, 186, 262
Van91I CCANNNNNTGG 1 cut(s) 928
VpaK11BI GGWCC 1 cut(s) 798
XagI CCTNNNNNAGG 1 cut(s) 730
XapI RAATTY 2 cut(s) 276, 857
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 1 cut(s) 732
Zsp2I ATGCAT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.