Rh6AG103600

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000235
Physical Location & Seq
Reverse (-)
15302755 .. 15303048
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG103600.1

Sequence Viewer

Length: 294 bp
ATGCCATCAACGCATTATGTATATAACAAGCACCATATGTCGCTCGTGCAGGGATTTCCCACAGAATGGTGTAGGAAGTATTTACCAGCAAACCGCTACAAATTTTTGCTGAGAAACGCAGAAGATTTAGAGGGAAGAACATGGGAAGTGAATGGTGTTCCTACCAATGATAGGGTCATATTATCTGCAGGGTGGGCTGCTTTTCTACATGGTAACCAAGTCAAGAAAGGAGATGTTTGCTGGCTTGAGCTCGAGAGTAAAAGCAAGATGGTGGCTCACATAATTCGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

97

Amino Acids

11.31

Weight (kDa)

9.43

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 96 2.4e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 66
AciI CCGC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 101
AfiI CCNNNNNNNGG 2 cut(s) 66, 171
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 251
BanII GRGCYC 1 cut(s) 252
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 13, 262
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 266
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 171
BseLI CCNNNNNNNGG 2 cut(s) 66, 171
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 184
BsgI GTGCAG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 66, 171
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 252
BspACI CCGC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 190
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 110
BstEII GGTNACC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 10, 194
BstPI GGTNACC 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 242
CviAII CATG 2 cut(s) 141, 209
CviJI RGCY 4 cut(s) 197, 244, 250, 275
CviKI_1 RGCY 4 cut(s) 197, 244, 250, 275
DdeI CTNAG 1 cut(s) 110
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 251
Eco91I GGTNACC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 2 cut(s) 144, 212
FaiI YATR 9 cut(s) 18, 22, 24, 36, 38, 142, 179, 210, 281
FatI CATG 2 cut(s) 140, 208
FauNDI CATATG 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
Hin1II CATG 2 cut(s) 144, 212
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 2 cut(s) 223, 253
HpyCH4V TGCA 2 cut(s) 49, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 194
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 2 cut(s) 144, 212
LpnPI CCDG 4 cut(s) 35, 99, 174, 226
Lsp1109I GCAGC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 212
MboII GAAGA 2 cut(s) 134, 147
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 101, 282
MnlI CCTC 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 10, 194
NdeI CATATG 1 cut(s) 36
NlaIII CATG 2 cut(s) 144, 212
PaeR7I CTCGAG 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 212
PstI CTGCAG 1 cut(s) 190
SacI GAGCTC 1 cut(s) 252
SatI GCNGC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 252
SetI ASST 1 cut(s) 252
SfcI CTRYAG 1 cut(s) 186
Sfr274I CTCGAG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 245, 251
SmoI CTYRAG 2 cut(s) 245, 251
Sse9I AATT 2 cut(s) 101, 282
SsiI CCGC 1 cut(s) 94
SstI GAGCTC 1 cut(s) 252
TaqI TCGA 1 cut(s) 252
TasI AATT 2 cut(s) 101, 282
TseI GCWGC 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 66
XapI RAATTY 1 cut(s) 101
XhoI CTCGAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.