RchiOBHm_Chr6g0259781

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000235
Physical Location & Seq
Forward (+)
15017822 .. 15025241
7420 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23295

Sequence Viewer

Length: 948 bp
ATGGCGAGAGCAGGATTCAACAATGGTGGTATGGAGGAGCAGAAGGGTCCTACCTTCTTCAAGATAATCAAGCCCGGATTCAACACAGATCATCTGAGAATTCCACCAGCATTCAGGAAGCACATCTTGAATGAACTCTCTATAGGGGCAACTTTGACTCTGAGCAGTTCTGCAGATTCTTCATGGAATGTCAGAGCCCATAAAATAGGAAGGGATATTTATCTCAAGGAAGGCTGGCAAGAGTTTCTAAGAGATAACTCCTTAGGTGATTCAGAGTTCTTGATGTTTGGATATGATGGAAATATGCATTTCAGCATAGATATTTTTGAGAAGAATTGTTGTAAGAGAACCAAAGCTCCCGCTTTGAGAAGGCATCAACAATCCACCTTTACTAACAATACTAAAAGACCACGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGTAACAGTACTAAAAGACCACGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCTAAATGGTGAATCCAGAAACACTACTAAAAGACCTCGTGGTAGACCAAGAAAGAGCGGTGATGCAGCTGAACACACTCCAAATGGTAAATCCAGTATTCCCATGGAGTATACTGAATCAAGATTCCCCGCTTTTATCCGAACCATTAATAAAGTCTATGGAGTGGATTTGCCCACAGGCTTCTGTAGGAAGCATCTTCCTCCTGACTACTACAAATTCATCCTGGAAAATACAGAGGGAGACAGATGGGAAGCGAATGGTGTTCCTAGCAATAATACAATTCTGTTGTCTAGAGGATGGGTTTCTTTTGCACGGGGTAACGGAGTTGAAATAGGAGATGATTGCTTGTTTGAGCTCCAGAGCAAAAGCAAGATGGTGGTTCACATGGTGGTTCACAAAATTAGGCAAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

315

Amino Acids

35.61

Weight (kDa)

9.89

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 19 - 112 1.8e-14 B3 DNA binding domain
B3 PF02362 233 - 306 1.5e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 432, 510, 588
AccI GTMKAC 4 cut(s) 418, 496, 574, 641
AciI CCGC 5 cut(s) 360, 432, 510, 588, 660
AcsI RAATTY 2 cut(s) 99, 746
AcvI CACGTG 2 cut(s) 413, 491
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 1 cut(s) 478
AgsI TTSAA 5 cut(s) 19, 61, 82, 130, 860
AjnI CCWGG 1 cut(s) 753
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 5 cut(s) 356, 443, 521, 599, 886
AluI AGCT 5 cut(s) 356, 443, 521, 599, 886
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 1 cut(s) 765
ApeKI GCWGC 3 cut(s) 440, 518, 596
ApoI RAATTY 2 cut(s) 99, 746
AseI ATTAAT 1 cut(s) 678
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 6 cut(s) 278, 446, 473, 524, 551, 602
AvaII GGWCC 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 262
BanII GRGCYC 2 cut(s) 199, 888
BauI CACGAG 1 cut(s) 567
BbrPI CACGTG 2 cut(s) 413, 491
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 3 cut(s) 452, 530, 608
BccI CCATC 4 cut(s) 290, 771, 822, 898
BciT130I CCWGG 1 cut(s) 755
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 2 cut(s) 798, 822
BfmI CTRYAG 3 cut(s) 141, 171, 715
BisI GCNGC 3 cut(s) 441, 519, 597
BlsI GCNGC 3 cut(s) 442, 520, 598
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 2 cut(s) 75, 755
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 2 cut(s) 75, 755
BmsI GCATC 5 cut(s) 382, 427, 505, 583, 733
BpmI CTGGAG 1 cut(s) 872
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 2 cut(s) 413, 491
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bse1I ACTGG 2 cut(s) 468, 624
Bse21I CCTNAGG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 1 cut(s) 755
BseDI CCNNGG 1 cut(s) 633
BseGI GGATG 2 cut(s) 750, 833
BseJI GATNNNNATC 1 cut(s) 219
BseMII CTCAG 2 cut(s) 86, 152
BseNI ACTGG 2 cut(s) 468, 624
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 452, 530, 608
BsiHKAI GWGCWC 1 cut(s) 888
BsiSI CCGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 110
Bsp1286I GDGCHC 2 cut(s) 199, 888
Bsp143I GATC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 633
BspACI CCGC 5 cut(s) 360, 432, 510, 588, 660
BspCNI CTCAG 2 cut(s) 87, 153
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 175
BsrBI CCGCTC 3 cut(s) 432, 510, 588
BsrI ACTGG 2 cut(s) 468, 624
BssECI CCNNGG 1 cut(s) 633
BssMI GATC 1 cut(s) 88
BssNAI GTATAC 1 cut(s) 642
BssSI CACGAG 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 633
Bst1107I GTATAC 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 755
Bst4CI ACNGT 1 cut(s) 476
BstBAI YACGTR 2 cut(s) 413, 491
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 4 cut(s) 95, 161, 248, 262
BstDSI CCRYGG 1 cut(s) 633
BstF5I GGATG 2 cut(s) 750, 833
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 755
BstSCI CCNGG 2 cut(s) 73, 753
BstSFI CTRYAG 3 cut(s) 141, 171, 715
BstV1I GCAGC 3 cut(s) 452, 530, 608
BstZ17I GTATAC 1 cut(s) 642
Bsu36I CCTNAGG 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 633
BtsCI GGATG 2 cut(s) 750, 833
Cac8I GCNNGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 477
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 183, 634, 916
CviJI RGCY 9 cut(s) 73, 197, 234, 356, 443, 521, 599, 711, 886
CviKI_1 RGCY 9 cut(s) 73, 197, 234, 356, 443, 521, 599, 711, 886
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 4 cut(s) 95, 161, 248, 262
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraIII CACNNNGTG 1 cut(s) 919
Ecl136II GAGCTC 1 cut(s) 886
Eco130I CCWWGG 1 cut(s) 633
Eco24I GRGCYC 2 cut(s) 199, 888
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 886
Eco72I CACGTG 2 cut(s) 413, 491
Eco81I CCTNAGG 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 886
EcoO109I RGGNCCY 1 cut(s) 47
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 753
EcoT14I CCWWGG 1 cut(s) 633
EcoT22I ATGCAT 1 cut(s) 309
EcoT38I GRGCYC 2 cut(s) 199, 888
ErhI CCWWGG 1 cut(s) 633
FaeI CATG 3 cut(s) 186, 637, 919
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 3 cut(s) 182, 633, 915
FauI CCCGC 2 cut(s) 367, 667
FblI GTMKAC 4 cut(s) 418, 496, 574, 641
Fnu4HI GCNGC 3 cut(s) 441, 519, 597
FokI GGATG 2 cut(s) 737, 840
FriOI GRGCYC 2 cut(s) 199, 888
Fsp4HI GCNGC 3 cut(s) 441, 519, 597
FspBI CTAG 2 cut(s) 798, 822
GluI GCNGC 3 cut(s) 441, 519, 597
GsuI CTGGAG 1 cut(s) 872
HapII CCGG 1 cut(s) 75
Hin1II CATG 3 cut(s) 186, 637, 919
HinfI GANTC 9 cut(s) 15, 78, 157, 176, 269, 464, 542, 647, 654
HpaII CCGG 1 cut(s) 75
HphI GGTGA 6 cut(s) 278, 446, 473, 524, 551, 602
Hpy166II GTNNAC 6 cut(s) 419, 497, 575, 642, 913, 925
Hpy188I TCNGA 5 cut(s) 96, 162, 194, 274, 671
Hpy188III TCNNGA 9 cut(s) 61, 115, 127, 280, 546, 651, 734, 822, 889
Hpy8I GTNNAC 6 cut(s) 419, 497, 575, 642, 913, 925
HpyAV CCTTC 5 cut(s) 37, 64, 204, 224, 363
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4IV ACGT 2 cut(s) 412, 490
HpyCH4V TGCA 6 cut(s) 173, 307, 440, 518, 596, 842
HpyF3I CTNAG 4 cut(s) 95, 161, 248, 262
HpySE526I ACGT 2 cut(s) 412, 490
Hsp92II CATG 3 cut(s) 186, 637, 919
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 3 cut(s) 37, 361, 891
Lsp1109I GCAGC 3 cut(s) 452, 530, 608
LweI GCATC 5 cut(s) 382, 427, 505, 583, 733
MaeI CTAG 2 cut(s) 798, 822
MaeII ACGT 2 cut(s) 412, 490
MaeIII GTNAC 2 cut(s) 470, 848
MalI GATC 1 cut(s) 90
MbiI CCGCTC 3 cut(s) 432, 510, 588
MboI GATC 1 cut(s) 88
MboII GAAGA 4 cut(s) 49, 171, 343, 719
MhlI GDGCHC 2 cut(s) 199, 888
MluCI AATT 5 cut(s) 99, 334, 746, 810, 930
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 5 cut(s) 28, 576, 741, 760, 818
Mph1103I ATGCAT 1 cut(s) 309
MseI TTAA 1 cut(s) 678
MspA1I CMGCKG 3 cut(s) 443, 521, 599
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 75, 755
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 755
NciI CCSGG 1 cut(s) 75
NcoI CCATGG 1 cut(s) 633
NdeII GATC 1 cut(s) 88
NlaIII CATG 3 cut(s) 186, 637, 919
NlaIV GGNNCC 1 cut(s) 48
NsiI ATGCAT 1 cut(s) 309
PctI GAATGC 1 cut(s) 110
PfeI GAWTC 8 cut(s) 15, 78, 176, 269, 464, 542, 647, 654
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 3 cut(s) 442, 520, 598
PleI GAGTC 1 cut(s) 151
PmaCI CACGTG 2 cut(s) 413, 491
PmlI CACGTG 2 cut(s) 413, 491
PpsI GAGTC 1 cut(s) 151
Ppu21I YACGTR 2 cut(s) 413, 491
PpuMI RGGWCCY 1 cut(s) 47
PshBI ATTAAT 1 cut(s) 678
Psp124BI GAGCTC 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 753
PspCI CACGTG 2 cut(s) 413, 491
PspGI CCWGG 1 cut(s) 753
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PstI CTGCAG 1 cut(s) 175
PvuII CAGCTG 3 cut(s) 443, 521, 599
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
SacI GAGCTC 1 cut(s) 888
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 3 cut(s) 441, 519, 597
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 75, 755
SduI GDGCHC 2 cut(s) 199, 888
SfaNI GCATC 5 cut(s) 382, 427, 505, 583, 733
SfcI CTRYAG 3 cut(s) 141, 171, 715
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 5 cut(s) 99, 334, 746, 810, 930
SsiI CCGC 5 cut(s) 360, 432, 510, 588, 660
SspMI CTAG 2 cut(s) 798, 822
SstI GAGCTC 1 cut(s) 888
StyD4I CCNGG 2 cut(s) 73, 753
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 476
TaiI ACGT 2 cut(s) 415, 493
TasI AATT 5 cut(s) 99, 334, 746, 810, 930
TatI WGTACW 1 cut(s) 476
TfiI GAWTC 8 cut(s) 15, 78, 176, 269, 464, 542, 647, 654
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TseI GCWGC 3 cut(s) 440, 518, 596
TspDTI ATGAA 3 cut(s) 147, 171, 739
TspGWI ACGGA 1 cut(s) 867
VpaK11BI GGWCC 1 cut(s) 47
VspI ATTAAT 1 cut(s) 678
XapI RAATTY 2 cut(s) 99, 746
XbaI TCTAGA 1 cut(s) 821
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmiI GTMKAC 4 cut(s) 418, 496, 574, 641
XspI CTAG 2 cut(s) 798, 822
ZrmI AGTACT 1 cut(s) 478
Zsp2I ATGCAT 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.