FvH4_1g22700

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000235
Physical Location & Seq
Forward (+)
14665390 .. 14667214
1825 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22700.t1

Sequence Viewer

Length: 810 bp
ATGGCAAGAAGAGCATCCACATCCCTTCCATTTCATGTTGGTGGTGTTGAGGAGGAGGAGAATGGGCCTACCTTCTTCAAGATCATAAAGCCTGGATTCAACACTGAGCATTTAGTAAGTGATTTCAAGCCCTACCATCTCTTCAACTTCATGAATCCTGCTCTGAATATTATTGCTGTTACGAGAATCCCACCTGCGTTTCGGAAGCATGTATCACATGAACTCACTAAGAGAGCAATCTTGAAATTGAAGAATTCATCAGAATCTTCCTGGACTGTTATAGTAAGTAAAACAGGAAGGGACATATATTTAAAGGATGGCTGGCAGGAGTTTTTAAGAGATAACGCCCTAGGTGATTCTGAGTTCTTAGTAGCATGTGAATCATCCATCTTTTCAGACAGTTCTAAAAGGCCTTTGGCAAGACCACCAACAGGTAATCATCGATATGACTTGGTTGCGGAAGCTGCTAAGGGACTTAAATCCAAAGGTGAACACCTTCCAAGTTGTGCAGCTGCTGCAGCTTTCAAATCCAAATTTCCTTGGTTTACAAAAGTTCTTAAAAAATCGAGGATGGTGGCAATCCCCACACACTTCTACAAGATAATGTTTCCTTCAAGAAAATATGATAACATTTTCCTGGTGACTTCAAAGGGAAAATTCACAGTGACGCTTATTACTTGCGCTAATACAATGATGTTGTCTGGAGGGTGGTCTTCCTTTAGAAAGGCTAACCTACTCCAGGTTGGTGATATCTGCATCTTTGAGCTCGTGAAAGAAAACACCATGAAGGTTCACATTTTCCGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

270

Amino Acids

30.38

Weight (kDa)

9.79

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 62 - 124 5.7e-10 B3 DNA binding domain
B3 PF02362 187 - 269 9.8e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AciI CCGC 1 cut(s) 458
AcsI RAATTY 3 cut(s) 253, 533, 656
AfiI CCNNNNNNNGG 2 cut(s) 431, 739
AgsI TTSAA 9 cut(s) 79, 100, 127, 145, 244, 250, 526, 615, 648
AjnI CCWGG 4 cut(s) 91, 269, 636, 738
AluBI AGCT 4 cut(s) 464, 512, 521, 766
AluI AGCT 4 cut(s) 464, 512, 521, 766
Alw21I GWGCWC 1 cut(s) 768
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 2 cut(s) 65, 410
ApeKI GCWGC 5 cut(s) 464, 509, 512, 515, 518
ApoI RAATTY 3 cut(s) 253, 533, 656
Asp700I GAANNNNTTC 1 cut(s) 495
AspA2I CCTAGG 1 cut(s) 349
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 4 cut(s) 365, 500, 652, 758
AvrII CCTAGG 1 cut(s) 349
BanII GRGCYC 1 cut(s) 768
BauI CACGAG 1 cut(s) 767
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 1 cut(s) 768
BbvI GCAGC 5 cut(s) 451, 499, 502, 521, 530
BccI CCATC 4 cut(s) 144, 311, 395, 565
BciT130I CCWGG 4 cut(s) 93, 271, 638, 740
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 516
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 5 cut(s) 465, 510, 513, 516, 519
BlnI CCTAGG 1 cut(s) 349
BlsI GCNGC 5 cut(s) 466, 511, 514, 517, 520
Bme1390I CCNGG 4 cut(s) 93, 271, 638, 740
BmgT120I GGNCC 1 cut(s) 65
BmrFI CCNGG 4 cut(s) 93, 271, 638, 740
BmsI GCATC 2 cut(s) 23, 765
BpiI GAAGAC 1 cut(s) 705
BpmI CTGGAG 2 cut(s) 722, 723
Bpu10I CCTNAGC 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 442
BsaJI CCNNGG 2 cut(s) 349, 539
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 739
BseBI CCWGG 4 cut(s) 93, 271, 638, 740
BseCI ATCGAT 1 cut(s) 442
BseDI CCNNGG 2 cut(s) 349, 539
BseGI GGATG 5 cut(s) 14, 20, 322, 383, 576
BseLI CCNNNNNNNGG 2 cut(s) 431, 739
BseMII CTCAG 2 cut(s) 96, 351
BseRI GAGGAG 3 cut(s) 65, 68, 71
BseXI GCAGC 5 cut(s) 451, 499, 502, 521, 530
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 2 cut(s) 67, 412
BshVI ATCGAT 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 768
BslFI GGGAC 2 cut(s) 314, 486
BslI CCNNNNNNNGG 2 cut(s) 431, 739
BsmFI GGGAC 2 cut(s) 314, 486
BsnI GGCC 2 cut(s) 67, 412
Bsp1286I GDGCHC 1 cut(s) 768
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 1 cut(s) 458
BspANI GGCC 2 cut(s) 67, 412
BspCNI CTCAG 2 cut(s) 97, 352
BspDI ATCGAT 1 cut(s) 442
BspHI TCATGA 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 202
BspQI GCTCTTC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 349, 539
BssMI GATC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 767
BssT1I CCWWGG 2 cut(s) 349, 539
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 4 cut(s) 93, 271, 638, 740
Bst4CI ACNGT 3 cut(s) 277, 401, 664
Bst6I CTCTTC 2 cut(s) 4, 146
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 5 cut(s) 105, 228, 360, 367, 468
BstENI CCTNNNNNAGG 1 cut(s) 737
BstF5I GGATG 5 cut(s) 14, 20, 322, 383, 576
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 4 cut(s) 11, 464, 515, 518
BstNI CCWGG 4 cut(s) 93, 271, 638, 740
BstNSI RCATGY 2 cut(s) 212, 378
BstSCI CCNGG 4 cut(s) 91, 269, 636, 738
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 5 cut(s) 451, 499, 502, 521, 530
BstV2I GAAGAC 1 cut(s) 705
Bsu15I ATCGAT 1 cut(s) 442
BsuRI GGCC 2 cut(s) 67, 412
BsuTUI ATCGAT 1 cut(s) 442
BtsCI GGATG 5 cut(s) 14, 20, 322, 383, 576
BtsIMutI CAGTG 2 cut(s) 102, 669
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 323
CaiI CAGNNNCTG 1 cut(s) 515
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 442
CseI GACGC 1 cut(s) 676
CviAII CATG 6 cut(s) 35, 151, 209, 218, 375, 784
DdeI CTNAG 5 cut(s) 105, 228, 360, 367, 468
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DraI TTTAAA 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 4, 146
EarI CTCTTC 2 cut(s) 4, 146
Ecl136II GAGCTC 1 cut(s) 766
Eco130I CCWWGG 2 cut(s) 349, 539
Eco147I AGGCCT 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 768
Eco32I GATATC 1 cut(s) 751
Eco53kI GAGCTC 1 cut(s) 766
EcoICRI GAGCTC 1 cut(s) 766
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 4 cut(s) 91, 269, 636, 738
EcoRV GATATC 1 cut(s) 751
EcoT14I CCWWGG 2 cut(s) 349, 539
EcoT38I GRGCYC 1 cut(s) 768
ErhI CCWWGG 2 cut(s) 349, 539
FaeI CATG 6 cut(s) 38, 154, 212, 221, 378, 787
FaqI GGGAC 2 cut(s) 314, 486
FatI CATG 6 cut(s) 34, 150, 208, 217, 374, 783
Fnu4HI GCNGC 5 cut(s) 465, 510, 513, 516, 519
FokI GGATG 4 cut(s) 7, 329, 370, 583
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 5 cut(s) 465, 510, 513, 516, 519
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 682
GluI GCNGC 5 cut(s) 465, 510, 513, 516, 519
GsuI CTGGAG 2 cut(s) 722, 723
HaeIII GGCC 2 cut(s) 67, 412
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 683
Hin1II CATG 6 cut(s) 38, 154, 212, 221, 378, 787
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HinfI GANTC 6 cut(s) 96, 154, 186, 263, 356, 380
HphI GGTGA 4 cut(s) 365, 500, 652, 758
Hpy166II GTNNAC 3 cut(s) 491, 546, 793
Hpy188I TCNGA 6 cut(s) 165, 204, 262, 361, 397, 803
Hpy188III TCNNGA 6 cut(s) 79, 151, 241, 615, 702, 769
Hpy8I GTNNAC 3 cut(s) 491, 546, 793
HpyAV CCTTC 6 cut(s) 35, 82, 291, 506, 621, 781
HpyCH4III ACNGT 3 cut(s) 277, 401, 664
HpyCH4V TGCA 3 cut(s) 509, 518, 756
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 464, 515, 518
HpyF3I CTNAG 5 cut(s) 105, 228, 360, 367, 468
Hsp92II CATG 6 cut(s) 38, 154, 212, 221, 378, 787
HspAI GCGC 1 cut(s) 681
Kzo9I GATC 1 cut(s) 81
LguI GCTCTTC 1 cut(s) 4
Lsp1109I GCAGC 5 cut(s) 451, 499, 502, 521, 530
LweI GCATC 2 cut(s) 23, 765
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 178, 640, 664
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 6 cut(s) 21, 67, 133, 258, 262, 705
MhlI GDGCHC 1 cut(s) 768
MluCI AATT 4 cut(s) 245, 253, 533, 656
MnlI CCTC 5 cut(s) 43, 46, 49, 561, 698
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 4 cut(s) 311, 335, 477, 558
MslI CAYNNNNRTG 2 cut(s) 39, 444
MspA1I CMGCKG 1 cut(s) 512
MspR9I CCNGG 4 cut(s) 93, 271, 638, 740
MvaI CCWGG 4 cut(s) 93, 271, 638, 740
MwoI GCNNNNNNNGC 4 cut(s) 11, 464, 515, 518
NdeII GATC 1 cut(s) 81
NlaIII CATG 6 cut(s) 38, 154, 212, 221, 378, 787
NmuCI GTSAC 2 cut(s) 640, 664
NspI RCATGY 2 cut(s) 212, 378
PagI TCATGA 1 cut(s) 150
PaqCI CACCTGC 1 cut(s) 202
PceI AGGCCT 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 6 cut(s) 96, 154, 186, 263, 356, 380
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 5 cut(s) 466, 511, 514, 517, 520
Psp124BI GAGCTC 1 cut(s) 768
Psp6I CCWGG 4 cut(s) 91, 269, 636, 738
PspGI CCWGG 4 cut(s) 91, 269, 636, 738
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 520
PstNI CAGNNNCTG 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 512
RseI CAYNNNNRTG 2 cut(s) 39, 444
SacI GAGCTC 1 cut(s) 768
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 4 cut(s) 311, 335, 477, 558
SatI GCNGC 5 cut(s) 465, 510, 513, 516, 519
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 65
ScrFI CCNGG 4 cut(s) 93, 271, 638, 740
SduI GDGCHC 1 cut(s) 768
SfaNI GCATC 2 cut(s) 23, 765
SfcI CTRYAG 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 39, 444
Sse9I AATT 4 cut(s) 245, 253, 533, 656
SseBI AGGCCT 1 cut(s) 412
SsiI CCGC 1 cut(s) 458
SspI AATATT 1 cut(s) 169
SspMI CTAG 1 cut(s) 350
SstI GAGCTC 1 cut(s) 768
StuI AGGCCT 1 cut(s) 412
StyD4I CCNGG 4 cut(s) 91, 269, 636, 738
StyI CCWWGG 2 cut(s) 349, 539
TaaI ACNGT 3 cut(s) 277, 401, 664
TaqI TCGA 2 cut(s) 442, 566
TasI AATT 4 cut(s) 245, 253, 533, 656
TfiI GAWTC 6 cut(s) 96, 154, 186, 263, 356, 380
Tru1I TTAA 4 cut(s) 311, 335, 477, 558
Tru9I TTAA 4 cut(s) 311, 335, 477, 558
TscAI CASTG 2 cut(s) 109, 669
TseFI GTSAC 2 cut(s) 640, 664
TseI GCWGC 5 cut(s) 464, 509, 512, 515, 518
Tsp45I GTSAC 2 cut(s) 640, 664
TspDTI ATGAA 6 cut(s) 23, 139, 167, 234, 246, 800
TspRI CASTG 2 cut(s) 109, 669
XagI CCTNNNNNAGG 1 cut(s) 737
XapI RAATTY 3 cut(s) 253, 533, 656
XceI RCATGY 2 cut(s) 212, 378
XmaJI CCTAGG 1 cut(s) 349
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.