Rmu_sc0011974.1_g000003

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011974.1
OG0000235
Physical Location & Seq
Reverse (-)
5268 .. 7060
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011974.1_g000003.1.cds

Sequence Viewer

Length: 336 bp
atggcgaggagaatagccaagaatggtggtatcaaggaagagagaccttctttcttcaaggtcattcttcccggttacaacactgaacagttgtattcaattcccacagccttctataggaagcatctttctgcaggcaactacgaagttgctttcctgaagatttcagggggaaccaaatggtacaaagtgaagcttgtcccttcccttcaaacagccttcatgtctaaagggtggtctgtgtttgcgcatgataaccaaatcgtggttggagatgtttgcgctttcgagctcgtgaaagcgaacaaaatggtggttcacattctccggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

111

Amino Acids

12.58

Weight (kDa)

9.95

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 249
AccB7I CCANNNNNTGG 1 cut(s) 265
AccIII TCCGGA 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 117, 265
AgsI TTSAA 3 cut(s) 58, 99, 212
AluBI AGCT 2 cut(s) 196, 292
AluI AGCT 2 cut(s) 196, 292
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 327
AspLEI GCGC 2 cut(s) 250, 284
AsuC2I CCSGG 1 cut(s) 72
BanII GRGCYC 1 cut(s) 294
BauI CACGAG 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 294
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 37
BfmI CTRYAG 2 cut(s) 115, 132
Bme1390I CCNGG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 37
BsaWI WCCGGW 1 cut(s) 327
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 265
BseAI TCCGGA 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 117, 265
BseRI GAGGAG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 2 cut(s) 72, 328
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 117, 265
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 294
Bsp13I TCCGGA 1 cut(s) 327
BspEI TCCGGA 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 37
BssSI CACGAG 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 115
BstHHI GCGC 2 cut(s) 250, 284
BstMAI GTCTC 1 cut(s) 37
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 2 cut(s) 115, 132
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 2 cut(s) 250, 284
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 223, 251
CviJI RGCY 5 cut(s) 17, 110, 196, 218, 292
CviKI_1 RGCY 5 cut(s) 17, 110, 196, 218, 292
CviQI GTAC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 292
EcoNI CCTNNNNNAGG 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 2 cut(s) 226, 254
FaiI YATR 3 cut(s) 117, 224, 252
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 1 cut(s) 185
FatI CATG 2 cut(s) 222, 250
FriOI GRGCYC 1 cut(s) 294
FspI TGCGCA 1 cut(s) 249
GlaI GCGC 2 cut(s) 249, 283
HapII CCGG 2 cut(s) 72, 328
HhaI GCGC 2 cut(s) 250, 284
Hin1II CATG 2 cut(s) 226, 254
Hin6I GCGC 2 cut(s) 248, 282
HinP1I GCGC 2 cut(s) 248, 282
HindIII AAGCTT 1 cut(s) 194
HpaII CCGG 2 cut(s) 72, 328
Hpy166II GTNNAC 1 cut(s) 319
Hpy188III TCNNGA 3 cut(s) 157, 295, 328
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 5 cut(s) 57, 121, 213, 218, 229
HpyCH4III ACNGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 134
Hsp92II CATG 2 cut(s) 226, 254
HspAI GCGC 2 cut(s) 248, 282
Kpn2I TCCGGA 1 cut(s) 327
LpnPI CCDG 4 cut(s) 85, 120, 153, 170
LweI GCATC 1 cut(s) 133
MaeIII GTNAC 1 cut(s) 74
MboII GAAGA 4 cut(s) 46, 50, 59, 172
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 250
MroI TCCGGA 1 cut(s) 327
MspI CCGG 2 cut(s) 72, 328
MspR9I CCNGG 1 cut(s) 72
NciI CCSGG 1 cut(s) 72
NlaIII CATG 2 cut(s) 226, 254
NlaIV GGNNCC 1 cut(s) 175
NsbI TGCGCA 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 265
Psp124BI GAGCTC 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 175
PstI CTGCAG 1 cut(s) 136
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 294
SetI ASST 4 cut(s) 49, 63, 198, 294
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 2 cut(s) 115, 132
Sse9I AATT 1 cut(s) 99
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 99
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 211
TspRI CASTG 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.