FvH4_2g06920

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000235
Physical Location & Seq
Reverse (-)
5708806 .. 5710856
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06920.t1

Sequence Viewer

Length: 477 bp
ATGCATTTCAGCATAGCATTTTTTGACTGGAGTTGTTGTGAGAGAGTCGATTTTACTAATGGGACATGCAAAGAATCCACACTTGCTAAGAGTACTAAAAGGCCTTGTCATAAACCAAGAAAACATAACTCAGATAACACAGCTAAGGAATCTGCGATATCTTTCAAATCCAAGTATCCTCATTACAAAAAAGCTATTAATAAGACTTATTGTGTTTACTCAACTCCAACAGCCTTCTATAGCAAGCATCTTTCTGCAGGCAACTATAAATTTGCTTTCGTGAACATCTCTGGGGGAAACAAATGGTATAAAGTGAAGCTTGTACCTTCCTGTCAAACAGCCTTCATGTCTGCAGGGTGGGCTGAGTTCGCCCGTGATAAGAAAATCATGGTTGGAGATGTCTGCGCTTTCGAGCTTCTGAAAGAGAACAAAATGGTGGTTCACATTCTCCAGAAAGGATCACGTTCAAGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

159

Amino Acids

18.01

Weight (kDa)

9.61

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 74 - 152 2.8e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 2 cut(s) 94, 324
AgsI TTSAA 2 cut(s) 166, 468
AluBI AGCT 5 cut(s) 143, 194, 319, 415, 471
AluI AGCT 5 cut(s) 143, 194, 319, 415, 471
AlwI GGATC 1 cut(s) 466
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 269
AseI ATTAAT 1 cut(s) 198
AspLEI GCGC 1 cut(s) 407
BciVI GTATCC 1 cut(s) 186
BfmI CTRYAG 3 cut(s) 238, 255, 351
BfuI GTATCC 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 94
BmsI GCATC 1 cut(s) 256
BpmI CTGGAG 2 cut(s) 49, 434
Bpu10I CCTNAGC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bse1I ACTGG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 144, 354
BseNI ACTGG 1 cut(s) 32
BshFI GGCC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 458
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 143, 355
BspMAI CTGCAG 2 cut(s) 259, 355
BspPI GGATC 1 cut(s) 466
BsrI ACTGG 1 cut(s) 32
BssMI GATC 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 245, 259
BstDEI CTNAG 4 cut(s) 87, 130, 144, 363
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 1 cut(s) 461
BstMBI GATC 1 cut(s) 458
BstMWI GCNNNNNNNGC 2 cut(s) 359, 368
BstNSI RCATGY 1 cut(s) 69
BstSFI CTRYAG 3 cut(s) 238, 255, 351
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 245, 259
CfoI GCGC 1 cut(s) 407
Csp6I GTAC 2 cut(s) 93, 323
CviAII CATG 3 cut(s) 66, 346, 388
CviJI RGCY 9 cut(s) 103, 143, 194, 233, 319, 341, 362, 415, 471
CviKI_1 RGCY 9 cut(s) 103, 143, 194, 233, 319, 341, 362, 415, 471
CviQI GTAC 2 cut(s) 93, 323
DdeI CTNAG 4 cut(s) 87, 130, 144, 363
DpnI GATC 1 cut(s) 460
DpnII GATC 1 cut(s) 458
Eco147I AGGCCT 1 cut(s) 103
Eco32I GATATC 1 cut(s) 159
EcoRV GATATC 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 69, 349, 391
FaiI YATR 9 cut(s) 14, 67, 111, 126, 240, 267, 309, 347, 389
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 76
FatI CATG 3 cut(s) 65, 345, 387
GlaI GCGC 1 cut(s) 406
GsuI CTGGAG 2 cut(s) 49, 434
HaeIII GGCC 1 cut(s) 103
HhaI GCGC 1 cut(s) 407
Hin1II CATG 3 cut(s) 69, 349, 391
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 3 cut(s) 45, 74, 149
Hpy166II GTNNAC 3 cut(s) 217, 283, 442
Hpy188I TCNGA 2 cut(s) 133, 420
Hpy188III TCNNGA 2 cut(s) 280, 451
Hpy8I GTNNAC 3 cut(s) 217, 283, 442
HpyAV CCTTC 3 cut(s) 244, 336, 352
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 4 cut(s) 4, 69, 257, 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 368
HpyF3I CTNAG 4 cut(s) 87, 130, 144, 363
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 3 cut(s) 69, 349, 391
HspAI GCGC 1 cut(s) 405
Kzo9I GATC 1 cut(s) 458
LpnPI CCDG 6 cut(s) 13, 243, 276, 339, 343, 464
LweI GCATC 1 cut(s) 256
MaeII ACGT 1 cut(s) 463
MalI GATC 1 cut(s) 460
MboI GATC 1 cut(s) 458
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 2 cut(s) 251, 373
MnlI CCTC 1 cut(s) 189
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 198, 475
MwoI GCNNNNNNNGC 2 cut(s) 359, 368
NdeII GATC 1 cut(s) 458
NlaIII CATG 3 cut(s) 69, 349, 391
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 69
PceI AGGCCT 1 cut(s) 103
PfeI GAWTC 2 cut(s) 74, 149
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 198
PstI CTGCAG 2 cut(s) 259, 355
RsaI GTAC 2 cut(s) 94, 324
RsaNI GTAC 2 cut(s) 93, 323
SaqAI TTAA 2 cut(s) 198, 475
Sau3AI GATC 1 cut(s) 458
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 1 cut(s) 54
SetI ASST 7 cut(s) 145, 196, 321, 328, 417, 466, 473
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 3 cut(s) 238, 255, 351
Sse9I AATT 1 cut(s) 269
SseBI AGGCCT 1 cut(s) 103
StuI AGGCCT 1 cut(s) 103
TaiI ACGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 48, 411
TasI AATT 1 cut(s) 269
TatI WGTACW 1 cut(s) 92
TfiI GAWTC 2 cut(s) 74, 149
Tru1I TTAA 2 cut(s) 198, 475
Tru9I TTAA 2 cut(s) 198, 475
TspDTI ATGAA 1 cut(s) 334
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 94
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.