Rh6CG092300

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000235
Physical Location & Seq
Reverse (-)
10163514 .. 10167621
4108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG092300.1

Sequence Viewer

Length: 789 bp
ATGGTGAGAAAGAATGGTGTCAAGGAAAAGAGGCCTTCATTCTTCAAGGTTATTCTTCCAGGTTACTCCACTGAACGTCTCATGATTCCAGCGCAGTTCTTGAAGCATCTTAGGAAGGATCTATGTAGCAAGGCAACTTTGAGCTTGAACATGTCTTCACAGTGTTCATGGAATGTGAAAGTGACTAAAACAAAGAAAGATGTGTATTTCAAGGATGGGTGGCAGGAGTTTTTAAACAATAACTCAGTGGATGAAGGCGACTTCCTAGTGTTCACCTATGAAGGGAAAATGCATTTCAGCATAGCGGTTTTCGACAGGAGTTGTTGTGGAAGAGTTGATTTTCCTAATGAAACATTCAAAGAATCCATAGTTGCTATGACTACTAAAAGGCCTTGTGGTAGACCAAGAAAAGATAACTCAGCTGCAGTTAACACAGCTAAGGAATCTGCTATATCTTTCAAATCCAAGTTTCCTCATTACAAAAGTACTATTAAGAAAACTTATTGTGTGTACTCAATTCCCACCACCTTCTACAGGGAGCATCTTTCTGCAGGCAAATATGAATTTGCTTTCCTGAAGATCTCAGGGGGAAACAAATGGTACAAAGTGAAGCTTGTCCCTTCCATTCGAACAGCCTTCATGTCCAAAGGGTGGGCTGCGTTTGCGCGTGATAACCAGATCAAGGTTGGACATGTTTGCATTTTCGAGCTTGTGAAAGAGAACAAAATGGTGGTGCACAATTTAACATTCTCCGGAAATGATCAAGTTCAAGCTATTAACAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

262

Amino Acids

30.0

Weight (kDa)

9.73

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 14 - 106 1.9e-16 B3 DNA binding domain
B3 PF02362 169 - 245 1.1e-10 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 651
AccI GTMKAC 1 cut(s) 400
AccII CGCG 1 cut(s) 667
AccIII TCCGGA 1 cut(s) 752
AciI CCGC 1 cut(s) 305
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 596
AfaI GTAC 3 cut(s) 487, 512, 602
AfiI CCNNNNNNNGG 4 cut(s) 282, 534, 651, 682
AflIII ACRYGT 2 cut(s) 150, 691
AgsI TTSAA 7 cut(s) 46, 103, 148, 211, 358, 460, 770
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 6 cut(s) 144, 422, 437, 613, 709, 773
AluI AGCT 6 cut(s) 144, 422, 437, 613, 709, 773
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 83
Alw44I GTGCAC 1 cut(s) 734
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 786
Aor13HI TCCGGA 1 cut(s) 752
AoxI GGCC 2 cut(s) 32, 389
ApaLI GTGCAC 1 cut(s) 734
ApeKI GCWGC 2 cut(s) 422, 656
ApoI RAATTY 1 cut(s) 563
AspLEI GCGC 2 cut(s) 94, 667
AsuHPI GGTGA 2 cut(s) 16, 265
AsuII TTCGAA 1 cut(s) 628
BaeGI GKGCMC 1 cut(s) 738
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 738
BbvI GCAGC 2 cut(s) 409, 643
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 60
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 3 cut(s) 423, 532, 549
BglII AGATCT 1 cut(s) 579
BisI GCNGC 2 cut(s) 423, 657
BlsI GCNGC 2 cut(s) 424, 658
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 115, 550
BpiI GAAGAC 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 628
BsaWI WCCGGW 1 cut(s) 752
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 4 cut(s) 282, 534, 651, 682
BseAI TCCGGA 1 cut(s) 752
BseBI CCWGG 1 cut(s) 60
BseGI GGATG 2 cut(s) 220, 256
BseLI CCNNNNNNNGG 4 cut(s) 282, 534, 651, 682
BseMII CTCAG 3 cut(s) 258, 432, 597
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 2 cut(s) 409, 643
Bsh1236I CGCG 1 cut(s) 667
BshFI GGCC 2 cut(s) 34, 391
BsiHKAI GWGCWC 1 cut(s) 738
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 4 cut(s) 282, 534, 651, 682
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 602
BsnI GGCC 2 cut(s) 34, 391
Bsp119I TTCGAA 1 cut(s) 628
Bsp1286I GDGCHC 1 cut(s) 738
Bsp13I TCCGGA 1 cut(s) 752
Bsp143I GATC 4 cut(s) 118, 579, 678, 760
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 34, 391
BspCNI CTCAG 3 cut(s) 257, 431, 596
BspEI TCCGGA 1 cut(s) 752
BspFNI CGCG 1 cut(s) 667
BspHI TCATGA 1 cut(s) 81
BspMAI CTGCAG 2 cut(s) 427, 553
BspPI GGATC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 628
BssMI GATC 4 cut(s) 118, 579, 678, 760
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 325
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 5 cut(s) 110, 244, 418, 438, 583
BstENI CCTNNNNNAGG 1 cut(s) 532
BstF5I GGATG 2 cut(s) 220, 256
BstFNI CGCG 1 cut(s) 667
BstHHI GCGC 2 cut(s) 94, 667
BstKTI GATC 4 cut(s) 121, 582, 681, 763
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 4 cut(s) 118, 579, 678, 760
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstNI CCWGG 1 cut(s) 60
BstNSI RCATGY 2 cut(s) 154, 695
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 3 cut(s) 423, 532, 549
BstSLI GKGCMC 1 cut(s) 738
BstUI CGCG 1 cut(s) 667
BstV1I GCAGC 2 cut(s) 409, 643
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 118, 579
BstYI RGATCY 2 cut(s) 118, 579
BsuRI GGCC 2 cut(s) 34, 391
BtsCI GGATG 2 cut(s) 220, 256
BtsIMutI CAGTG 3 cut(s) 69, 167, 252
Cac8I GCNNGC 1 cut(s) 553
CaiI CAGNNNCTG 1 cut(s) 786
CciI TCATGA 1 cut(s) 81
CfoI GCGC 2 cut(s) 94, 667
Csp6I GTAC 3 cut(s) 486, 511, 601
CviAII CATG 5 cut(s) 82, 151, 168, 640, 692
CviQI GTAC 3 cut(s) 486, 511, 601
DdeI CTNAG 5 cut(s) 110, 244, 418, 438, 583
DpnI GATC 4 cut(s) 120, 581, 680, 762
DpnII GATC 4 cut(s) 118, 579, 678, 760
DraI TTTAAA 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 325
Eco147I AGGCCT 2 cut(s) 34, 391
Eco57I CTGAAG 1 cut(s) 596
EcoNI CCTNNNNNAGG 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 58
EcoT22I ATGCAT 1 cut(s) 294
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 5 cut(s) 85, 154, 171, 643, 695
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 1 cut(s) 602
FatI CATG 5 cut(s) 81, 150, 167, 639, 691
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 2 cut(s) 423, 657
FokI GGATG 2 cut(s) 227, 263
Fsp4HI GCNGC 2 cut(s) 423, 657
FspBI CTAG 1 cut(s) 266
GlaI GCGC 2 cut(s) 93, 666
GluI GCNGC 2 cut(s) 423, 657
HaeIII GGCC 2 cut(s) 34, 391
HapII CCGG 1 cut(s) 753
HhaI GCGC 2 cut(s) 94, 667
Hin1II CATG 5 cut(s) 85, 154, 171, 643, 695
Hin6I GCGC 2 cut(s) 92, 665
HinP1I GCGC 2 cut(s) 92, 665
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 3 cut(s) 85, 362, 443
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 1 cut(s) 753
HphI GGTGA 2 cut(s) 16, 265
Hpy166II GTNNAC 5 cut(s) 273, 401, 430, 511, 736
Hpy188I TCNGA 1 cut(s) 788
Hpy188III TCNNGA 4 cut(s) 82, 100, 574, 753
Hpy8I GTNNAC 5 cut(s) 273, 401, 430, 511, 736
HpyAV CCTTC 7 cut(s) 45, 109, 248, 275, 538, 630, 646
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 5 cut(s) 292, 425, 551, 699, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 5 cut(s) 110, 244, 418, 438, 583
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 5 cut(s) 85, 154, 171, 643, 695
HspAI GCGC 2 cut(s) 92, 665
Kpn2I TCCGGA 1 cut(s) 752
Ksp22I TGATCA 1 cut(s) 760
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 4 cut(s) 118, 579, 678, 760
LmnI GCTCC 1 cut(s) 538
Lsp1109I GCAGC 2 cut(s) 409, 643
LweI GCATC 2 cut(s) 115, 550
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 62, 181
MalI GATC 4 cut(s) 120, 581, 680, 762
MboI GATC 4 cut(s) 118, 579, 678, 760
MboII GAAGA 5 cut(s) 34, 47, 147, 342, 589
MflI RGATCY 2 cut(s) 118, 579
MhlI GDGCHC 1 cut(s) 738
MluCI AATT 3 cut(s) 516, 563, 739
MmeI TCCRAC 1 cut(s) 667
MnlI CCTC 2 cut(s) 24, 483
Mph1103I ATGCAT 1 cut(s) 294
MroI TCCGGA 1 cut(s) 752
MseI TTAA 5 cut(s) 233, 429, 492, 743, 777
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 667
MwoI GCNNNNNNNGC 1 cut(s) 662
NdeII GATC 4 cut(s) 118, 579, 678, 760
NlaIII CATG 5 cut(s) 85, 154, 171, 643, 695
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 294
NspI RCATGY 2 cut(s) 154, 695
NspV TTCGAA 1 cut(s) 628
PagI TCATGA 1 cut(s) 81
PceI AGGCCT 2 cut(s) 34, 391
PciI ACATGT 2 cut(s) 150, 691
PfeI GAWTC 3 cut(s) 85, 362, 443
PflMI CCANNNNNTGG 1 cut(s) 651
PkrI GCNGC 2 cut(s) 424, 658
PscI ACATGT 2 cut(s) 150, 691
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PstI CTGCAG 2 cut(s) 427, 553
PstNI CAGNNNCTG 1 cut(s) 786
PsuI RGATCY 2 cut(s) 118, 579
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 3 cut(s) 487, 512, 602
RsaNI GTAC 3 cut(s) 486, 511, 601
SaqAI TTAA 5 cut(s) 233, 429, 492, 743, 777
SatI GCNGC 2 cut(s) 423, 657
Sau3AI GATC 4 cut(s) 118, 579, 678, 760
ScaI AGTACT 1 cut(s) 487
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 2 cut(s) 115, 550
SfcI CTRYAG 3 cut(s) 423, 532, 549
SfuI TTCGAA 1 cut(s) 628
Sse9I AATT 3 cut(s) 516, 563, 739
SseBI AGGCCT 2 cut(s) 34, 391
SsiI CCGC 1 cut(s) 305
SspMI CTAG 1 cut(s) 266
StuI AGGCCT 2 cut(s) 34, 391
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 79
TaqI TCGA 3 cut(s) 312, 628, 705
TasI AATT 3 cut(s) 516, 563, 739
TatI WGTACW 2 cut(s) 485, 510
TfiI GAWTC 3 cut(s) 85, 362, 443
Tru1I TTAA 5 cut(s) 233, 429, 492, 743, 777
Tru9I TTAA 5 cut(s) 233, 429, 492, 743, 777
TscAI CASTG 3 cut(s) 76, 167, 252
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 422, 656
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 7 cut(s) 27, 156, 267, 294, 363, 576, 628
TspRI CASTG 3 cut(s) 76, 167, 252
Van91I CCANNNNNTGG 1 cut(s) 651
VneI GTGCAC 1 cut(s) 734
XagI CCTNNNNNAGG 1 cut(s) 532
XapI RAATTY 1 cut(s) 563
XceI RCATGY 2 cut(s) 154, 695
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XmiI GTMKAC 1 cut(s) 400
XspI CTAG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 487
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.