Rmu_sc0003958.1_g000011

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003958.1
OG0000235
Physical Location & Seq
Reverse (-)
44432 .. 46365
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003958.1_g000011.1.cds

Sequence Viewer

Length: 492 bp
atggcgagaagagcttgcacatctcttccatttcatgatggtagtgttgaggaggagaaggggcctaccttcttcaagatcataaggcctggagtcaacactgagcatttggtaagtgatcatcgatatgacttggctgtggaagctgctcatgtgcttaaatccaaaggcgagcaccttccaagttatgcagctgctgcagctttcaaatccaaatttccttactttgcaaaagttcttgcaggatcgaagatggtggcagttcccacacatttctatagggagatattttcttcaagcaaatatgatgaacttttcctggtgactgcaaagggaaaattcacagtgacgcttctcccatgcactgatacagtgatgttgtctggagggtggtcttcctttagaaatgacaaccaactccaagaagatgatatttgcatctttgagcttgtgaaagaaaacaccatggtggttcacattttccgaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007275 GO:0008150 GO:0009553 GO:0009566 GO:0009567 GO:0019953 GO:0022414 GO:0032501 GO:0032502 GO:0044703 GO:0048229 GO:0048856 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

163

Amino Acids

18.34

Weight (kDa)

7.05

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000235)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22700 FvH4_2g06920 FvH4_2g06920 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06960 FvH4_2g06970 FvH4_2g06970 FvH4_2g07230 FvH4_2g07231 FvH4_2g07231 FvH4_2g07240 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07290 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_2g07300 FvH4_4g19990 FvH4_4g19990 FvH4_4g19990 FvH4_4g20070
malus_domestica MD05G1072700.v1.1
prunus_persica Prupe.8G113100_v2.0.a1
pyrus_communis pycom05g06500 pycom10g06950
rosa_chinensis RchiOBHm_Chr4g0425711 RchiOBHm_Chr6g0259241 RchiOBHm_Chr6g0259251 RchiOBHm_Chr6g0259321 RchiOBHm_Chr6g0259331 RchiOBHm_Chr6g0259781 RchiOBHm_Chr6g0259791 RchiOBHm_Chr6g0259811 RchiOBHm_Chr6g0259881 RchiOBHm_Chr6g0259931
rosa_laevigata RLG00000007345 RLG00000014500 RLG00000014501 RLG00000014505 RLG00000014506 RLG00000014507 RLG00000014539 RLG00000014540 RLG00000014545 RLG00000014546
rosa_multiflora Rmu_co8137334.1_g000001 Rmu_co8454279.1_g000001 Rmu_co8476373.1_g000001 Rmu_sc0001078.1_g000001 Rmu_sc0003958.1_g000011 Rmu_sc0009049.1_g000001 Rmu_sc0009049.1_g000009 Rmu_sc0010546.1_g000001 Rmu_sc0011974.1_g000002 Rmu_sc0011974.1_g000003 Rmu_sc0033846.1_g000001 Rmu_sc0036999.1_g000001 Rmu_ssc0000052.1_g000015
rosa_roxburghii Rroxscaffold_5G00367690 Rroxscaffold_7G00206530 Rroxscaffold_7G00206540 Rroxscaffold_7G00206560 Rroxscaffold_7G00206570 Rroxscaffold_7G00207020 Rroxscaffold_7G00207030 Rroxscaffold_7G00207150 Rroxscaffold_7G00207160 Rroxscaffold_7G00207170 Rroxscaffold_7G00207270
rosa_rugosa Rorug04G0205300 Rorug05G0586300 Rorug05G0586400 Rorug05G0586500 Rorug05G0586600 Rorug05G0586700 Rorug05G0587300 Rorug05G0587400 Rorug05G0587500 Rorug05G0587600 Rorug05G0590500 Rorug05G0590600 Rorug05G0591200 Rorug05G0591300 Rorug05G0591400 Rorug05G0591500
rosa_samantha Rh4AG262200 Rh4BG268500 Rh4CG279700 Rh4DG264100 Rh6AG103100 Rh6AG103600 Rh6AG107100 Rh6AG107200 Rh6AG107700 Rh6BG095400 Rh6BG095500 Rh6BG095900 Rh6BG096000 Rh6BG096800 Rh6BG102600 Rh6BG102700 Rh6BG102800 Rh6BG103800 Rh6CG092300 Rh6CG092400 Rh6CG092800 Rh6CG092900 Rh6CG096200 Rh6CG096300 Rh6CG096800 Rh6CG097100 Rh6DG086300 Rh6DG086400 Rh6DG086700 Rh6DG086800 Rh6DG090000 Rh6DG090100 Rh6DG090500 Rh6DG090800
rosa_wichuraiana Rw4G022670 Rw6G008900 Rw6G008940 Rw6G009250 Rw6G009280 Rw6G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 215, 338
AgsI TTSAA 3 cut(s) 76, 208, 297
AjnI CCWGG 2 cut(s) 88, 318
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 5 cut(s) 14, 146, 194, 203, 448
AluI AGCT 5 cut(s) 14, 146, 194, 203, 448
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 62, 86
ApeKI GCWGC 5 cut(s) 146, 191, 194, 197, 200
ApoI RAATTY 2 cut(s) 215, 338
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 387
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 5 cut(s) 133, 181, 184, 203, 212
BccI CCATC 2 cut(s) 32, 247
BciT130I CCWGG 2 cut(s) 90, 320
BclI TGATCA 1 cut(s) 118
BfmI CTRYAG 2 cut(s) 198, 277
BisI GCNGC 5 cut(s) 147, 192, 195, 198, 201
BlsI GCNGC 5 cut(s) 148, 193, 196, 199, 202
Bme1390I CCNGG 2 cut(s) 90, 320
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 2 cut(s) 90, 320
BmsI GCATC 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 2 cut(s) 111, 405
Bsa29I ATCGAT 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 465
BseBI CCWGG 2 cut(s) 90, 320
BseCI ATCGAT 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 93
BseRI GAGGAG 2 cut(s) 65, 68
BseXI GCAGC 5 cut(s) 133, 181, 184, 203, 212
BshFI GGCC 2 cut(s) 64, 88
BshVI ATCGAT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 177
BsnI GGCC 2 cut(s) 64, 88
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 3 cut(s) 78, 118, 245
Bsp19I CCATGG 1 cut(s) 465
BspANI GGCC 2 cut(s) 64, 88
BspCNI CTCAG 1 cut(s) 94
BspDI ATCGAT 1 cut(s) 124
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 3 cut(s) 78, 118, 245
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 90, 320
Bst4CI ACNGT 2 cut(s) 346, 373
Bst6I CTCTTC 2 cut(s) 4, 30
BstAPI GCANNNNNTGC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 16, 173
BstDEI CTNAG 1 cut(s) 102
BstDSI CCRYGG 1 cut(s) 465
BstKTI GATC 3 cut(s) 81, 121, 248
BstMBI GATC 3 cut(s) 78, 118, 245
BstMWI GCNNNNNNNGC 4 cut(s) 11, 143, 197, 200
BstNI CCWGG 2 cut(s) 90, 320
BstSCI CCNGG 2 cut(s) 88, 318
BstSFI CTRYAG 2 cut(s) 198, 277
BstV1I GCAGC 5 cut(s) 133, 181, 184, 203, 212
BstV2I GAAGAC 1 cut(s) 387
Bsu15I ATCGAT 1 cut(s) 124
BsuRI GGCC 2 cut(s) 64, 88
BsuTUI ATCGAT 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 465
BtsIMutI CAGTG 4 cut(s) 99, 351, 363, 378
Cac8I GCNNGC 2 cut(s) 16, 173
CaiI CAGNNNCTG 1 cut(s) 197
CciI TCATGA 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 124
CseI GACGC 1 cut(s) 358
CviAII CATG 4 cut(s) 35, 152, 360, 466
CviJI RGCY 8 cut(s) 14, 64, 88, 137, 146, 194, 203, 448
CviKI_1 RGCY 8 cut(s) 14, 64, 88, 137, 146, 194, 203, 448
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 80, 120, 247
DpnII GATC 3 cut(s) 78, 118, 245
Eam1104I CTCTTC 2 cut(s) 4, 30
EarI CTCTTC 2 cut(s) 4, 30
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 88, 318
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 4 cut(s) 38, 155, 363, 469
FaiI YATR 9 cut(s) 36, 83, 129, 153, 189, 279, 306, 361, 467
FatI CATG 4 cut(s) 34, 151, 359, 465
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 5 cut(s) 147, 192, 195, 198, 201
Fsp4HI GCNGC 5 cut(s) 147, 192, 195, 198, 201
GluI GCNGC 5 cut(s) 147, 192, 195, 198, 201
GsuI CTGGAG 2 cut(s) 111, 405
HaeIII GGCC 2 cut(s) 64, 88
HgaI GACGC 1 cut(s) 358
Hin1II CATG 4 cut(s) 38, 155, 363, 469
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 1 cut(s) 93
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 2 cut(s) 97, 475
Hpy188I TCNGA 1 cut(s) 485
Hpy188III TCNNGA 3 cut(s) 35, 76, 384
Hpy8I GTNNAC 2 cut(s) 97, 475
HpyAV CCTTC 3 cut(s) 52, 79, 188
HpyCH4III ACNGT 2 cut(s) 346, 373
HpyCH4V TGCA 8 cut(s) 18, 191, 200, 230, 242, 329, 363, 438
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 143, 197, 200
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 4 cut(s) 38, 155, 363, 469
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 3 cut(s) 78, 118, 245
LguI GCTCTTC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 75, 102, 228, 305, 332, 369
Lsp1109I GCAGC 5 cut(s) 133, 181, 184, 203, 212
LweI GCATC 1 cut(s) 447
MaeIII GTNAC 2 cut(s) 322, 346
MalI GATC 3 cut(s) 80, 120, 247
MboI GATC 3 cut(s) 78, 118, 245
MboII GAAGA 7 cut(s) 17, 21, 64, 262, 285, 387, 437
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 2 cut(s) 215, 338
MlyI GAGTC 1 cut(s) 102
MnlI CCTC 3 cut(s) 43, 46, 380
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 2 cut(s) 126, 467
MspA1I CMGCKG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 90, 320
MvaI CCWGG 2 cut(s) 90, 320
MwoI GCNNNNNNNGC 4 cut(s) 11, 143, 197, 200
NcoI CCATGG 1 cut(s) 465
NdeII GATC 3 cut(s) 78, 118, 245
NlaIII CATG 4 cut(s) 38, 155, 363, 469
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 322, 346
OliI CACNNNNGTG 1 cut(s) 467
PagI TCATGA 1 cut(s) 34
PceI AGGCCT 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 4
PkrI GCNGC 5 cut(s) 148, 193, 196, 199, 202
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 88, 318
PspGI CCWGG 2 cut(s) 88, 318
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 194
RseI CAYNNNNRTG 2 cut(s) 126, 467
SapI GCTCTTC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 147, 192, 195, 198, 201
Sau3AI GATC 3 cut(s) 78, 118, 245
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 2 cut(s) 90, 320
SduI GDGCHC 1 cut(s) 177
SetI ASST 7 cut(s) 16, 71, 148, 180, 196, 205, 450
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 2 cut(s) 198, 277
SmiMI CAYNNNNRTG 2 cut(s) 126, 467
Sse9I AATT 2 cut(s) 215, 338
SseBI AGGCCT 1 cut(s) 88
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 88, 318
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 346, 373
TaqI TCGA 2 cut(s) 124, 248
TasI AATT 2 cut(s) 215, 338
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 4 cut(s) 106, 351, 370, 378
TseFI GTSAC 2 cut(s) 322, 346
TseI GCWGC 5 cut(s) 146, 191, 194, 197, 200
Tsp45I GTSAC 2 cut(s) 322, 346
TspDTI ATGAA 2 cut(s) 23, 324
TspRI CASTG 4 cut(s) 106, 351, 370, 378
XapI RAATTY 2 cut(s) 215, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.