Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014892

Physical Location & Seq

Genomic Coordinates Forward (+)

15249797 .. 15254717

Gene Structure 4921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG103000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAATATGCATCTGGAGGAGAGCTCTTTGAGCGGATATGCAATGCAGGGCGGTTCAGTGAGGATGAGGCACGCTTCTTCTTTCAACAACTTATATCAGGAGTTAGTTACTGTCATGCAATGCAAGTGTGCCATCGGGACTTGAAGTTGGAGAACACATTGTTAGATGGAAGTCCTGCTCCTCGTTTAAAAATATGCGACTTTGGCTATTCAAAGTCTTCGGTGCTACATTCCCAACCAAAATCAACTGTTGGCACCCCTGCATATATTGCTCCCGAAGTGTTACTTAAGAAAGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGCGCATACCCATTTGAGGATCCTGGGGAGCCTAAGAACTTCCGCAAGACAATACATCGTATAACGAGTGTCCAGTACTCAATTCCTGACTATGTTCATATATCTCCAGAGTGCCGTCATCTGATCTCAAGAATTTTTGTGGCTGAGCCGGAGAAGAGGATAACAATTCCTGAAATAAGGAACCATGAGTGGTTTCTAAAAAACCTTCCAGCAGATCTCATGGTTGAAAACACGATGAACAGCCAGTTTGAAGAGCCTGATCAACCCATGCAAAGCATAGATGAGATCATGCAGATAATTGCTGAGGCTACAATACCGGCGGCTGGGACCAACAATCTCAACCAGTATCTTGCTGGCAGCCTGGACATCGACAACATGGAGGAGGATCTTGATACAGATCCTGACGACCTTGACATCGACAGCAGCGGGGAAATAGTCTATGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

268

Amino Acids

30.25

Weight (kDa)

4.59

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 184	2.5e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 180	1.4e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33950 AT4G33950
fragaria_vesca	FvH4_2g06910 FvH4_2g06910
malus_domestica	MD10G1089100.v1.1
prunus_persica	Prupe.8G115900_v2.0.a1 Prupe.8G115900_v2.0.a1 Prupe.8G115900_v2.0.a1
pyrus_communis	pycom10g07200
rosa_chinensis	RchiOBHm_Chr6g0259231
rosa_laevigata	RLG00000014547
rosa_rugosa	Rorug05G0586300
rosa_samantha	Rh6AG103000 Rh6BG095300 Rh6DG086200
rosa_wichuraiana	Rw6G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	5 cut(s)	34, 52, 400, 677, 783
AclWI	GGATC	4 cut(s)	371, 384, 749, 750
AcsI	RAATTY	1 cut(s)	489
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	373, 680
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	5 cut(s)	86, 145, 213, 584, 608
AjnI	CCWGG	2 cut(s)	379, 717
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	27
AlwI	GGATC	4 cut(s)	371, 384, 749, 750
AlwNI	CAGNNNCTG	1 cut(s)	758
ApeKI	GCWGC	2 cut(s)	714, 780
ApoI	RAATTY	1 cut(s)	489
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	684
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	27
BbvCI	CCTCAGC	1 cut(s)	660
BbvI	GCAGC	2 cut(s)	726, 792
BccI	CCATC	3 cut(s)	141, 161, 296
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	2 cut(s)	381, 719
BclI	TGATCA	1 cut(s)	616
BfrI	CTTAAG	1 cut(s)	287
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	3 cut(s)	678, 715, 781
BlpI	GCTNAGC	1 cut(s)	501
BlsI	GCNGC	3 cut(s)	679, 716, 782
BmcAI	AGTACT	1 cut(s)	434
Bme1390I	CCNGG	2 cut(s)	381, 719
Bme18I	GGWCC	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	684
BmiI	GGNNCC	5 cut(s)	256, 378, 387, 539, 685
BmrFI	CCNGG	2 cut(s)	381, 719
BmsI	GCATC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
BpmI	CTGGAG	2 cut(s)	36, 447
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	753
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 680
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	3 cut(s)	430, 601, 700
Bse3DI	GCAATG	2 cut(s)	49, 126
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	381, 719
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	2 cut(s)	373, 680
BseMI	GCAATG	2 cut(s)	49, 126
BseMII	CTCAG	2 cut(s)	492, 651
BseNI	ACTGG	3 cut(s)	430, 601, 700
BseRI	GAGGAG	3 cut(s)	33, 171, 752
BseXI	GCAGC	2 cut(s)	726, 792
BseYI	CCCAGC	1 cut(s)	680
BshNI	GGYRCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	2 cut(s)	506, 674
BslFI	GGGAC	2 cut(s)	152, 697
BslI	CCNNNNNNNGG	2 cut(s)	373, 680
BsmFI	GGGAC	2 cut(s)	152, 697
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
Bsp1720I	GCTNAGC	1 cut(s)	501
BspACI	CCGC	5 cut(s)	34, 52, 400, 677, 783
BspCNI	CTCAG	2 cut(s)	493, 652
BspLI	GGNNCC	5 cut(s)	256, 378, 387, 539, 685
BspPI	GGATC	4 cut(s)	371, 384, 749, 750
BspQI	GCTCTTC	1 cut(s)	603
BspT107I	GGYRCC	1 cut(s)	254
BspTI	CTTAAG	1 cut(s)	287
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	2 cut(s)	49, 126
BsrFI	RCCGGY	1 cut(s)	673
BsrI	ACTGG	3 cut(s)	430, 601, 700
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
Bst2UI	CCWGG	2 cut(s)	381, 719
Bst4CI	ACNGT	2 cut(s)	113, 250
Bst6I	CTCTTC	2 cut(s)	506, 603
BstAFI	CTTAAG	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	73, 712
BstDEI	CTNAG	3 cut(s)	390, 501, 660
BstEII	GGTNACC	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	7 cut(s)	379, 483, 574, 619, 645, 745, 757
BstMBI	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 204, 269
BstNI	CCWGG	2 cut(s)	381, 719
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	379, 717
BstV1I	GCAGC	2 cut(s)	726, 792
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	4 cut(s)	376, 571, 742, 754
BstYI	RGATCY	4 cut(s)	376, 571, 742, 754
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	73, 712
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	684
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	7 cut(s)	116, 349, 542, 577, 625, 646, 733
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	3 cut(s)	390, 501, 660
DpnI	GATC	7 cut(s)	378, 482, 573, 618, 644, 744, 756
DpnII	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	506, 603
EarI	CTCTTC	2 cut(s)	506, 603
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	684
Eco53kI	GAGCTC	1 cut(s)	25
Eco91I	GGTNACC	1 cut(s)	334
EcoICRI	GAGCTC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	334
EcoRII	CCWGG	2 cut(s)	379, 717
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	7 cut(s)	119, 352, 545, 580, 628, 649, 736
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	2 cut(s)	152, 697
FatI	CATG	7 cut(s)	115, 348, 541, 576, 624, 645, 732
FauI	CCCGC	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	678, 715, 781
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	3 cut(s)	678, 715, 781
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	3 cut(s)	678, 715, 781
GsaI	CCCAGC	1 cut(s)	684
GsuI	CTGGAG	2 cut(s)	36, 447
HapII	CCGG	2 cut(s)	506, 674
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	7 cut(s)	119, 352, 545, 580, 628, 649, 736
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HpaII	CCGG	2 cut(s)	506, 674
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	480
HpyAV	CCTTC	1 cut(s)	572
HpyCH4III	ACNGT	2 cut(s)	113, 250
HpyCH4V	TGCA	9 cut(s)	11, 42, 47, 119, 124, 263, 314, 628, 649
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 204, 269
HpyF3I	CTNAG	3 cut(s)	390, 501, 660
Hsp92II	CATG	7 cut(s)	119, 352, 545, 580, 628, 649, 736
HspAI	GCGC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	3 cut(s)	184, 277, 385
Lsp1109I	GCAGC	2 cut(s)	726, 792
LweI	GCATC	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	107, 282, 334
MalI	GATC	7 cut(s)	378, 482, 573, 618, 644, 744, 756
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
MboII	GAAGA	4 cut(s)	70, 210, 523, 620
MflI	RGATCY	4 cut(s)	376, 571, 742, 754
MhlI	GDGCHC	1 cut(s)	27
MluCI	AATT	4 cut(s)	438, 489, 522, 654
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	9 cut(s)	11, 55, 61, 192, 367, 507, 655, 730, 733
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	2 cut(s)	188, 288
MslI	CAYNNNNRTG	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	783
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	2 cut(s)	506, 674
MspR9I	CCNGG	2 cut(s)	381, 719
MvaI	CCWGG	2 cut(s)	381, 719
MwoI	GCNNNNNNNGC	3 cut(s)	31, 204, 269
NdeII	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
NlaIII	CATG	7 cut(s)	119, 352, 545, 580, 628, 649, 736
NlaIV	GGNNCC	5 cut(s)	256, 378, 387, 539, 685
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	13
PciSI	GCTCTTC	1 cut(s)	603
PkrI	GCNGC	3 cut(s)	679, 716, 782
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	379, 717
PspEI	GGTNACC	1 cut(s)	334
PspFI	CCCAGC	1 cut(s)	680
PspGI	CCWGG	2 cut(s)	379, 717
PspN4I	GGNNCC	5 cut(s)	256, 378, 387, 539, 685
PspPI	GGNCC	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	4 cut(s)	376, 571, 742, 754
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	188, 288
SatI	GCNGC	3 cut(s)	678, 715, 781
Sau3AI	GATC	7 cut(s)	376, 480, 571, 616, 642, 742, 754
Sau96I	GGNCC	1 cut(s)	684
ScaI	AGTACT	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	381, 719
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	4 cut(s)	27, 341, 564, 768
SfaNI	GCATC	1 cut(s)	20
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	287, 484
SmoI	CTYRAG	2 cut(s)	287, 484
Sse9I	AATT	4 cut(s)	438, 489, 522, 654
SsiI	CCGC	5 cut(s)	34, 52, 400, 677, 783
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	379, 717
TaaI	ACNGT	2 cut(s)	113, 250
TaqI	TCGA	2 cut(s)	726, 774
TasI	AATT	4 cut(s)	438, 489, 522, 654
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	680
Tru1I	TTAA	2 cut(s)	188, 288
Tru9I	TTAA	2 cut(s)	188, 288
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	2 cut(s)	714, 780
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	443, 608
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	1 cut(s)	489
XcmI	CCANNNNNNNNNTGG	1 cut(s)	707
ZrmI	AGTACT	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.