Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014892

Physical Location & Seq

Genomic Coordinates Forward (+)

14954646 .. 14956514

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG095300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATATATACAACTAGATTTCAAAGTGGATTTGTTTTTCTGTTCTTCATGAAGCAAGTGTGCCATCGGGACTTGAAGTTGGAGAACACATTGTTAGATGGAAGTCCTGCTCCTCGTTTAAAAATATGTGACTTTGGCTATTCAAAGTCTTCGGTGCTACATTCCCAACCAAAATCAACTGTTGGCACCCCTGCATATATTGCTCCCGAAGTGTTACTTAAGAAAGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGCGCATACCCATTTGAGGATCCTGGGGAGCCTAAGAACTTCCGCAAGACAATACATCGTATAACGAGTGTCCAGTACTCAATTCCTGACTATGTTCATATATCTCCAGAGTGCCGTCATCTGATCTCAAGAATTTTTGTGGCTGAGCCGGAGAAGAGGATAACAATTCCTGAAATTAGGAACCATGAGTGGTTTCTAAAAAACCTTCCAGCAGATCTCATGGTTGAAAACACGATGAACAGCCAGTTTGAAGAGCCTGATCAACCCATGCAAAGCATAGATGAGATCATGCAGATAATTGCTGAGGCTACAATACCGGCGGCTGGGACCAACAATCTCAACCAGTATCTTGCTGGCAGCCTGGACATCGACAACATGGAGGAGGATCTTGATACAGATCCTGACGACCTTGACATCGACAGCAGCGGGGAAATAGTCTATGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

245

Amino Acids

27.81

Weight (kDa)

4.68

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 161	5.7e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 157	5.1e-14	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0014892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33950 AT4G33950
fragaria_vesca	FvH4_2g06910 FvH4_2g06910
malus_domestica	MD10G1089100.v1.1
prunus_persica	Prupe.8G115900_v2.0.a1 Prupe.8G115900_v2.0.a1 Prupe.8G115900_v2.0.a1
pyrus_communis	pycom10g07200
rosa_chinensis	RchiOBHm_Chr6g0259231
rosa_laevigata	RLG00000014547
rosa_rugosa	Rorug05G0586300
rosa_samantha	Rh6AG103000 Rh6BG095300 Rh6DG086200
rosa_wichuraiana	Rw6G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AciI	CCGC	3 cut(s)	331, 608, 714
AclWI	GGATC	4 cut(s)	302, 315, 680, 681
AcsI	RAATTY	1 cut(s)	420
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	304, 611
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	23, 76, 144, 515, 539
AjnI	CCWGG	2 cut(s)	310, 648
AlwI	GGATC	4 cut(s)	302, 315, 680, 681
AlwNI	CAGNNNCTG	1 cut(s)	689
ApeKI	GCWGC	2 cut(s)	645, 711
ApoI	RAATTY	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	615
BamHI	GGATCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	141
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	657, 723
BccI	CCATC	3 cut(s)	72, 92, 227
BceAI	ACGGC	1 cut(s)	387
BciT130I	CCWGG	2 cut(s)	312, 650
BclI	TGATCA	1 cut(s)	547
BfaI	CTAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	218
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	3 cut(s)	609, 646, 712
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	3 cut(s)	610, 647, 713
BmcAI	AGTACT	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	312, 650
Bme18I	GGWCC	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	615
BmiI	GGNNCC	5 cut(s)	187, 309, 318, 470, 616
BmrFI	CCNGG	2 cut(s)	312, 650
BpiI	GAAGAC	1 cut(s)	141
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	684
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 611
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	3 cut(s)	361, 532, 631
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	312, 650
BseDI	CCNNGG	1 cut(s)	311
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	2 cut(s)	304, 611
BseMII	CTCAG	2 cut(s)	423, 582
BseNI	ACTGG	3 cut(s)	361, 532, 631
BseRI	GAGGAG	2 cut(s)	102, 683
BseXI	GCAGC	2 cut(s)	657, 723
BseYI	CCCAGC	1 cut(s)	611
BshNI	GGYRCC	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	437, 605
BslFI	GGGAC	2 cut(s)	83, 628
BslI	CCNNNNNNNGG	2 cut(s)	304, 611
BsmFI	GGGAC	2 cut(s)	83, 628
Bsp143I	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	3 cut(s)	331, 608, 714
BspCNI	CTCAG	2 cut(s)	424, 583
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	5 cut(s)	187, 309, 318, 470, 616
BspPI	GGATC	4 cut(s)	302, 315, 680, 681
BspQI	GCTCTTC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	185
BspTI	CTTAAG	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	3 cut(s)	361, 532, 631
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
Bst2UI	CCWGG	2 cut(s)	312, 650
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	437, 534
BstAFI	CTTAAG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	3 cut(s)	321, 432, 591
BstEII	GGTNACC	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	7 cut(s)	310, 414, 505, 550, 576, 676, 688
BstMBI	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	2 cut(s)	312, 650
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	310, 648
BstV1I	GCAGC	2 cut(s)	657, 723
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	4 cut(s)	307, 502, 673, 685
BstYI	RGATCY	4 cut(s)	307, 502, 673, 685
Cac8I	GCNNGC	1 cut(s)	643
CaiI	CAGNNNCTG	1 cut(s)	689
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	7 cut(s)	49, 280, 473, 508, 556, 577, 664
CviJI	RGCY	9 cut(s)	138, 319, 431, 436, 531, 544, 596, 611, 648
CviKI_1	RGCY	9 cut(s)	138, 319, 431, 436, 531, 544, 596, 611, 648
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	3 cut(s)	321, 432, 591
DpnI	GATC	7 cut(s)	309, 413, 504, 549, 575, 675, 687
DpnII	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	437, 534
EarI	CTCTTC	2 cut(s)	437, 534
Eco47I	GGWCC	1 cut(s)	615
Eco91I	GGTNACC	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	310, 648
FaeI	CATG	7 cut(s)	52, 283, 476, 511, 559, 580, 667
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	2 cut(s)	83, 628
FatI	CATG	7 cut(s)	48, 279, 472, 507, 555, 576, 663
FauI	CCCGC	1 cut(s)	707
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	3 cut(s)	609, 646, 712
Fsp4HI	GCNGC	3 cut(s)	609, 646, 712
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	3 cut(s)	609, 646, 712
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	1 cut(s)	378
HapII	CCGG	2 cut(s)	437, 605
HhaI	GCGC	1 cut(s)	293
Hin1II	CATG	7 cut(s)	52, 283, 476, 511, 559, 580, 667
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	437, 605
HphI	GGTGA	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	9 cut(s)	49, 68, 206, 374, 395, 417, 458, 677, 689
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	5 cut(s)	194, 245, 559, 580, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	3 cut(s)	321, 432, 591
Hsp92II	CATG	7 cut(s)	52, 283, 476, 511, 559, 580, 667
HspAI	GCGC	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	3 cut(s)	115, 208, 316
Lsp1109I	GCAGC	2 cut(s)	657, 723
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	3 cut(s)	128, 213, 265
MalI	GATC	7 cut(s)	309, 413, 504, 549, 575, 675, 687
MboI	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
MboII	GAAGA	4 cut(s)	37, 141, 454, 551
MflI	RGATCY	4 cut(s)	307, 502, 673, 685
MluCI	AATT	6 cut(s)	369, 420, 453, 462, 585, 732
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	6 cut(s)	123, 298, 438, 586, 661, 664
MseI	TTAA	2 cut(s)	119, 219
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	714
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	2 cut(s)	437, 605
MspR9I	CCNGG	2 cut(s)	312, 650
MvaI	CCWGG	2 cut(s)	312, 650
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
NlaIII	CATG	7 cut(s)	52, 283, 476, 511, 559, 580, 667
NlaIV	GGNNCC	5 cut(s)	187, 309, 318, 470, 616
NmuCI	GTSAC	2 cut(s)	128, 265
PagI	TCATGA	1 cut(s)	48
PciSI	GCTCTTC	1 cut(s)	534
PkrI	GCNGC	3 cut(s)	610, 647, 713
Psp6I	CCWGG	2 cut(s)	310, 648
PspEI	GGTNACC	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	2 cut(s)	310, 648
PspN4I	GGNNCC	5 cut(s)	187, 309, 318, 470, 616
PspPI	GGNCC	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	4 cut(s)	307, 502, 673, 685
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	119, 219
SatI	GCNGC	3 cut(s)	609, 646, 712
Sau3AI	GATC	7 cut(s)	307, 411, 502, 547, 573, 673, 685
Sau96I	GGNCC	1 cut(s)	615
ScaI	AGTACT	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	312, 650
SetI	ASST	3 cut(s)	272, 495, 699
SinI	GGWCC	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	218, 415
SmoI	CTYRAG	2 cut(s)	218, 415
Sse9I	AATT	6 cut(s)	369, 420, 453, 462, 585, 732
SsiI	CCGC	3 cut(s)	331, 608, 714
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	310, 648
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	657, 705
TasI	AATT	6 cut(s)	369, 420, 453, 462, 585, 732
TatI	WGTACW	1 cut(s)	363
TauI	GCSGC	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	119, 219
Tru9I	TTAA	2 cut(s)	119, 219
TseFI	GTSAC	2 cut(s)	128, 265
TseI	GCWGC	2 cut(s)	645, 711
Tsp45I	GTSAC	2 cut(s)	128, 265
TspDTI	ATGAA	4 cut(s)	37, 65, 374, 539
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	615
XapI	RAATTY	1 cut(s)	420
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XspI	CTAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.