Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0016043

Physical Location & Seq

Genomic Coordinates Reverse (-)

10701441 .. 10703974

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTGTAGCTCAAATCTCCGCATCTCTCTCCCTTTCCATCAGAGATGCAAGTGGAATTAGCTCACAAGCAGCAGCAGGTCCTGCTCGGCTTCCCCTTTTTAATTCCGCTAGAATTGGGATGGCCTTTGCTACTGGTTCTCCCCTCATTATAAGAAGAGCATACCAACAAAGGAATGCTGCATGTAAATCGATGCCAATTTCCATTAGGTGTGAGCAAAGCACCAAGGAGGGAGGTTTGGATGTATGGCTTGGCCGGCTCGCCATGATTGGCTTTGCTGTGGCTATTGGCGTTGAGGTATCAACCGGAAAGGGACTTCTCGAGAACTTTGGGCTAACAAGCCCCCTACCTACAGCTGCCTTGGGTGTTACAGCATTGGTGGGAATTTTGACAGCAGTTTTCATCTTCCAATCTGGGTCAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009987 GO:0016020 GO:0016168 GO:0031976 GO:0031984 GO:0034357 GO:0034644 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055035 GO:0055085 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071492 GO:0097159 GO:0104004 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

14.61

Weight (kDa)

9.89

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34190
fragaria_vesca	FvH4_2g05321
malus_domestica	MD05G1088100.v1.1
prunus_persica	Prupe.8G134100_v2.0.a1
pyrus_communis	pycom05g08750 pycom10g08230
rosa_chinensis	RchiOBHm_Chr6g0255531
rosa_laevigata	RLG00000014833
rosa_multiflora	Rmu_sc0006202.1_g000006
rosa_roxburghii	Rroxscaffold_7G00209910
rosa_rugosa	Rorug05G0559200
rosa_samantha	Rh6AG077700 Rh6CG068600 Rh6DG065400
rosa_wichuraiana	Rw6G006690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	2 cut(s)	21, 108
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	384
AluBI	AGCT	3 cut(s)	11, 63, 356
AluI	AGCT	3 cut(s)	11, 63, 356
AlwNI	CAGNNNCTG	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	123, 253
ApeKI	GCWGC	4 cut(s)	71, 74, 179, 356
ApoI	RAATTY	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	80
BbvI	GCAGC	4 cut(s)	83, 86, 166, 343
BccI	CCATC	2 cut(s)	47, 115
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	2 cut(s)	6, 351
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	4 cut(s)	72, 75, 180, 357
BlsI	GCNGC	4 cut(s)	73, 76, 181, 358
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	80
BmsI	GCATC	3 cut(s)	32, 37, 183
Bsa29I	ATCGAT	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	225, 360
BsaWI	WCCGGW	1 cut(s)	305
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	139
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	225, 360
BseGI	GGATG	2 cut(s)	126, 247
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	4 cut(s)	83, 86, 166, 343
BshFI	GGCC	2 cut(s)	125, 255
BshVI	ATCGAT	1 cut(s)	191
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	256, 306
BslFI	GGGAC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	125, 255
BsoBI	CYCGRG	1 cut(s)	320
BspACI	CCGC	2 cut(s)	21, 108
BspANI	GGCC	2 cut(s)	125, 255
BspDI	ATCGAT	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	225, 360
BssT1I	CCWWGG	2 cut(s)	225, 360
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstC8I	GCNNGC	2 cut(s)	257, 261
BstF5I	GGATG	2 cut(s)	126, 247
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 256
BstNSI	RCATGY	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	6, 351
BstV1I	GCAGC	4 cut(s)	83, 86, 166, 343
Bsu15I	ATCGAT	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	125, 255
BsuTUI	ATCGAT	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	126, 247
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	257, 261
CaiI	CAGNNNCTG	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	191
CviAII	CATG	2 cut(s)	183, 265
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	225, 360
Eco47I	GGWCC	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	320
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	225, 360
ErhI	CCWWGG	2 cut(s)	225, 360
FaeI	CATG	2 cut(s)	186, 268
FaiI	YATR	5 cut(s)	152, 163, 184, 247, 266
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	2 cut(s)	182, 264
Fnu4HI	GCNGC	4 cut(s)	72, 75, 180, 357
FokI	GGATG	2 cut(s)	133, 254
Fsp4HI	GCNGC	4 cut(s)	72, 75, 180, 357
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	4 cut(s)	72, 75, 180, 357
HaeIII	GGCC	2 cut(s)	125, 255
HapII	CCGG	2 cut(s)	256, 306
Hin1II	CATG	2 cut(s)	186, 268
HpaII	CCGG	2 cut(s)	256, 306
Hpy188I	TCNGA	2 cut(s)	44, 421
Hpy188III	TCNNGA	2 cut(s)	320, 322
HpyCH4V	TGCA	2 cut(s)	50, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 256
Hsp92II	CATG	2 cut(s)	186, 268
KroI	GCCGGC	1 cut(s)	255
KroNI	GCCGGC	1 cut(s)	257
LguI	GCTCTTC	1 cut(s)	151
LpnPI	CCDG	6 cut(s)	63, 96, 120, 269, 319, 399
Lsp1109I	GCAGC	4 cut(s)	83, 86, 166, 343
LweI	GCATC	3 cut(s)	32, 37, 183
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	168, 397
MluCI	AATT	5 cut(s)	57, 103, 114, 198, 384
MnlI	CCTC	4 cut(s)	155, 223, 227, 289
MroNI	GCCGGC	1 cut(s)	255
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	2 cut(s)	256, 306
Mva1269I	GAATGC	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	83, 256
NaeI	GCCGGC	1 cut(s)	257
NgoMIV	GCCGGC	1 cut(s)	255
NlaIII	CATG	2 cut(s)	186, 268
NmeAIII	GCCGAG	1 cut(s)	67
NspI	RCATGY	1 cut(s)	186
PaeR7I	CTCGAG	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	151
PctI	GAATGC	1 cut(s)	181
PdiI	GCCGGC	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	73, 76, 181, 358
PpuMI	RGGWCCY	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	80
PspPPI	RGGWCCY	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	356
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	4 cut(s)	72, 75, 180, 357
Sau96I	GGNCC	1 cut(s)	80
SetI	ASST	8 cut(s)	13, 65, 82, 212, 238, 300, 352, 358
SfaNI	GCATC	3 cut(s)	32, 37, 183
SfcI	CTRYAG	2 cut(s)	6, 351
Sfr274I	CTCGAG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	57, 103, 114, 198, 384
SsiI	CCGC	2 cut(s)	21, 108
SspMI	CTAG	1 cut(s)	111
StyI	CCWWGG	2 cut(s)	225, 360
TaqI	TCGA	2 cut(s)	191, 321
TasI	AATT	5 cut(s)	57, 103, 114, 198, 384
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	4 cut(s)	71, 74, 179, 356
TspDTI	ATGAA	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	1 cut(s)	186
XhoI	CTCGAG	1 cut(s)	320
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.