Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007072

Physical Location & Seq

Genomic Coordinates Forward (+)

12842000 .. 12845461

Gene Structure 3462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGGCTGAACGGCGAGCTTCCTCCGTGCTACGACGGAAGAGCGGAGGGGGAGGAGAATGGAGAAAATGAGAGAGAATTGAATTCGATCGTCAGCGTTGGGATTTCTCAGCCGCCGAAACTCGTCGTTGGGTACGCCTTGACCTCCAAGAAGAAGAAGAGCTTCTTGCAGCCCAAACTCGTTGTCTTGGCTAGGAATAAGGGGATCCTCTTCATTGCAATTGATGTAAACAAGCCACTTTCAGATCAAGGACCCTTTGATGTTGTTTTGCATAAGTTGTCGGGGAAAGAGTGGTCCGAGGTTATTGAGGATTACAGACAAAAACATCCAGAAGTAACTGTTCTTGATCCCCCAAATTCAGTAGAACATCTATACAACCGCCAGTCCATGCTTCAGGAAGTGGCTGATCTAAACTTGTCTGACTGCTATGGCACGGTTGGTGTTCCAAAGCAGTTGATTGTCACTAAAGATCCAACATCTATTCCAAATGAAGTTGATAAAGCTGGGCTAAAGTTGCCTCTGGTTGTCAAACCACTGGTTGTGGATGGTAGTGCCAAGTCACATGAACTATTTCTTGCTTATGACAAATGCTCCCTCTCAGAACTCGAACCTCCCTTGGTCCTGCAGGAGTTTGTAAATCACGGTGGTGTTCTCTTTAAAGTTTATATCGTTGGGGAAGCCATAAAGGTTGTAAGGCGTTTCTCTCTTCCCAATATCAGTAAACGTGAACTAGAAAAGCTTGCTGGTGTCTTCCGTTTCCCAAGGGTTTCATGTGCTGCGGCTTCAGCAGACGATGCAGACCTTGACCCTAGTTGTTGCAGAACTTCCTCAACGGCCTTTGTTAGAGAACCTTGCAAGGGAGCTCCGCCAACGATTGGGCCTTCGGCTATTCAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

300

Amino Acids

32.74

Weight (kDa)

6.26

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	42 - 120	1.6e-35	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	143 - 283	6.5e-56	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33770
fragaria_vesca	FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090 FvH4_2g03090
malus_domestica	MD00G1031200.v1.1
prunus_persica	Prupe.8G151200_v2.0.a1 Prupe.8G151200_v2.0.a1
pyrus_communis	pycom10g09690
rosa_chinensis	RchiOBHm_Chr6g0247961
rosa_laevigata	RLG00000015167
rosa_multiflora	Rmu_ssc0000139.1_g000003
rosa_roxburghii	Rroxscaffold_179G00449320 Rroxscaffold_7G00213550
rosa_rugosa	Rorug05G0529800 Rorug05G0529800
rosa_samantha	Rh6AG044600 Rh6BG039600 Rh6CG038200 Rh6DG035200
rosa_wichuraiana	Rw6G003880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccBSI	CCGCTC	1 cut(s)	44
AciI	CCGC	5 cut(s)	44, 113, 379, 779, 866
AclWI	GGATC	4 cut(s)	199, 212, 341, 464
AcsI	RAATTY	2 cut(s)	82, 355
AcuI	CTGAAG	2 cut(s)	377, 768
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	857, 875
AgsI	TTSAA	2 cut(s)	82, 893
AleI	CACNNNNGTG	1 cut(s)	645
AluBI	AGCT	5 cut(s)	19, 162, 503, 739, 863
AluI	AGCT	5 cut(s)	19, 162, 503, 739, 863
Alw21I	GWGCWC	1 cut(s)	865
AlwI	GGATC	4 cut(s)	199, 212, 341, 464
AoxI	GGCC	2 cut(s)	834, 878
ApeKI	GCWGC	2 cut(s)	169, 776
ApoI	RAATTY	2 cut(s)	82, 355
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	2 cut(s)	161, 570
AspS9I	GGNCC	4 cut(s)	251, 294, 619, 878
AvaII	GGWCC	3 cut(s)	251, 294, 619
BamHI	GGATCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	865
BbsI	GAAGAC	1 cut(s)	742
Bbv12I	GWGCWC	1 cut(s)	865
BbvI	GCAGC	2 cut(s)	181, 763
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	2 cut(s)	28, 849
BfaI	CTAG	3 cut(s)	192, 731, 810
BfmI	CTRYAG	1 cut(s)	623
BisI	GCNGC	4 cut(s)	113, 170, 777, 780
BlsI	GCNGC	4 cut(s)	114, 171, 778, 781
Bme18I	GGWCC	3 cut(s)	251, 294, 619
BmgT120I	GGNCC	4 cut(s)	251, 294, 619, 878
BmiI	GGNNCC	2 cut(s)	206, 253
BmsI	GCATC	1 cut(s)	784
BpiI	GAAGAC	1 cut(s)	742
BsaJI	CCNNGG	3 cut(s)	297, 615, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	857, 875
Bse1I	ACTGG	2 cut(s)	382, 540
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	3 cut(s)	297, 615, 761
BseGI	GGATG	2 cut(s)	325, 550
BseLI	CCNNNNNNNGG	2 cut(s)	857, 875
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	2 cut(s)	122, 612
BseNI	ACTGG	2 cut(s)	382, 540
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	181, 763
BseYI	CCCAGC	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	836, 880
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	865
BslI	CCNNNNNNNGG	2 cut(s)	857, 875
BsnI	GGCC	2 cut(s)	836, 880
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
BspACI	CCGC	5 cut(s)	44, 113, 379, 779, 866
BspANI	GGCC	2 cut(s)	836, 880
BspCNI	CTCAG	2 cut(s)	121, 611
BspLI	GGNNCC	2 cut(s)	206, 253
BspMAI	CTGCAG	1 cut(s)	627
BspPI	GGATC	4 cut(s)	199, 212, 341, 464
BspQI	GCTCTTC	2 cut(s)	34, 152
BsrBI	CCGCTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	382, 540
BssECI	CCNNGG	3 cut(s)	297, 615, 761
BssMI	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
BssT1I	CCWWGG	2 cut(s)	615, 761
Bst4CI	ACNGT	3 cut(s)	340, 436, 644
Bst6I	CTCTTC	4 cut(s)	34, 152, 215, 711
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	17, 741
BstDEI	CTNAG	2 cut(s)	108, 598
BstF5I	GGATG	2 cut(s)	325, 550
BstKTI	GATC	6 cut(s)	90, 207, 247, 349, 409, 472
BstMBI	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	3 cut(s)	514, 785, 794
BstSFI	CTRYAG	1 cut(s)	623
BstV1I	GCAGC	2 cut(s)	181, 763
BstV2I	GAAGAC	1 cut(s)	742
BstX2I	RGATCY	2 cut(s)	204, 469
BstYI	RGATCY	2 cut(s)	204, 469
BsuRI	GGCC	2 cut(s)	836, 880
BtsCI	GGATG	2 cut(s)	325, 550
BtsIMutI	CAGTG	1 cut(s)	533
Cac8I	GCNNGC	2 cut(s)	17, 741
Cfr13I	GGNCC	4 cut(s)	251, 294, 619, 878
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	388, 563, 771
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	108, 598
DpnI	GATC	6 cut(s)	89, 206, 246, 348, 408, 471
DpnII	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
DraI	TTTAAA	1 cut(s)	658
Eam1104I	CTCTTC	4 cut(s)	34, 152, 215, 711
EarI	CTCTTC	4 cut(s)	34, 152, 215, 711
EciI	GGCGGA	1 cut(s)	855
Ecl136II	GAGCTC	1 cut(s)	863
Eco130I	CCWWGG	2 cut(s)	615, 761
Eco24I	GRGCYC	1 cut(s)	865
Eco47I	GGWCC	3 cut(s)	251, 294, 619
Eco53kI	GAGCTC	1 cut(s)	863
Eco57I	CTGAAG	2 cut(s)	377, 768
EcoICRI	GAGCTC	1 cut(s)	863
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	615, 761
EcoT38I	GRGCYC	1 cut(s)	865
ErhI	CCWWGG	2 cut(s)	615, 761
FaeI	CATG	3 cut(s)	391, 566, 774
FaiI	YATR	9 cut(s)	273, 373, 389, 429, 564, 582, 666, 683, 772
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 149, 181
FatI	CATG	3 cut(s)	387, 562, 770
Fnu4HI	GCNGC	4 cut(s)	113, 170, 777, 780
FokI	GGATG	2 cut(s)	312, 557
FriOI	GRGCYC	1 cut(s)	865
Fsp4HI	GCNGC	4 cut(s)	113, 170, 777, 780
FspBI	CTAG	3 cut(s)	192, 731, 810
GluI	GCNGC	4 cut(s)	113, 170, 777, 780
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	836, 880
Hin1II	CATG	3 cut(s)	391, 566, 774
HindIII	AAGCTT	1 cut(s)	737
Hpy166II	GTNNAC	3 cut(s)	229, 722, 728
Hpy188I	TCNGA	4 cut(s)	244, 298, 421, 601
Hpy188III	TCNNGA	3 cut(s)	329, 344, 395
Hpy8I	GTNNAC	3 cut(s)	229, 722, 728
Hpy99I	CGWCG	2 cut(s)	38, 128
HpyAV	CCTTC	1 cut(s)	891
HpyCH4III	ACNGT	3 cut(s)	340, 436, 644
HpyCH4IV	ACGT	1 cut(s)	724
HpyCH4V	TGCA	7 cut(s)	169, 218, 271, 625, 797, 819, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	514, 785, 794
HpyF3I	CTNAG	2 cut(s)	108, 598
HpySE526I	ACGT	1 cut(s)	724
Hsp92II	CATG	3 cut(s)	391, 566, 774
Kzo9I	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
LguI	GCTCTTC	2 cut(s)	34, 152
LmnI	GCTCC	3 cut(s)	596, 860, 868
LpnPI	CCDG	9 cut(s)	342, 380, 395, 489, 506, 521, 611, 635, 729
Lsp1109I	GCAGC	2 cut(s)	181, 763
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	3 cut(s)	192, 731, 810
MaeII	ACGT	1 cut(s)	724
MaeIII	GTNAC	3 cut(s)	334, 460, 558
MalI	GATC	6 cut(s)	89, 206, 246, 348, 408, 471
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
MboII	GAAGA	7 cut(s)	51, 163, 166, 169, 202, 698, 742
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	2 cut(s)	204, 469
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	4 cut(s)	77, 82, 219, 355
MmeI	TCCRAC	1 cut(s)	497
MroXI	GAANNNNTTC	2 cut(s)	161, 570
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	645
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	3 cut(s)	514, 785, 794
NdeII	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
NlaIII	CATG	3 cut(s)	391, 566, 774
NlaIV	GGNNCC	2 cut(s)	206, 253
NmuCI	GTSAC	2 cut(s)	460, 558
OliI	CACNNNNGTG	1 cut(s)	645
PciSI	GCTCTTC	2 cut(s)	34, 152
PdmI	GAANNNNTTC	2 cut(s)	161, 570
PflMI	CCANNNNNTGG	1 cut(s)	875
PkrI	GCNGC	4 cut(s)	114, 171, 778, 781
Ple19I	CGATCG	1 cut(s)	90
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	865
Psp5II	RGGWCCY	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	206, 253
PspPI	GGNCC	4 cut(s)	251, 294, 619, 878
PspPPI	RGGWCCY	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	627
PsuI	RGATCY	2 cut(s)	204, 469
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	865
SapI	GCTCTTC	2 cut(s)	34, 152
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	4 cut(s)	113, 170, 777, 780
Sau3AI	GATC	6 cut(s)	87, 204, 244, 346, 406, 469
Sau96I	GGNCC	4 cut(s)	251, 294, 619, 878
SbfI	CCTGCAGG	1 cut(s)	627
SdaI	CCTGCAGG	1 cut(s)	627
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	1 cut(s)	623
SinI	GGWCC	3 cut(s)	251, 294, 619
SmiMI	CAYNNNNRTG	1 cut(s)	645
Sse8387I	CCTGCAGG	1 cut(s)	627
Sse9I	AATT	4 cut(s)	77, 82, 219, 355
SsiI	CCGC	5 cut(s)	44, 113, 379, 779, 866
SspMI	CTAG	3 cut(s)	192, 731, 810
SstI	GAGCTC	1 cut(s)	865
StyI	CCWWGG	2 cut(s)	615, 761
TaaI	ACNGT	3 cut(s)	340, 436, 644
TaiI	ACGT	1 cut(s)	727
TaqI	TCGA	2 cut(s)	86, 606
TasI	AATT	4 cut(s)	77, 82, 219, 355
TauI	GCSGC	2 cut(s)	115, 782
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	2 cut(s)	460, 558
TseI	GCWGC	2 cut(s)	169, 776
Tsp45I	GTSAC	2 cut(s)	460, 558
TspDTI	ATGAA	4 cut(s)	202, 504, 579, 759
TspGWI	ACGGA	3 cut(s)	15, 51, 743
TspRI	CASTG	1 cut(s)	540
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	3 cut(s)	251, 294, 619
XapI	RAATTY	2 cut(s)	82, 355
XmnI	GAANNNNTTC	2 cut(s)	161, 570
XspI	CTAG	3 cut(s)	192, 731, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.