pycom10g10750

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0018498
Physical Location & Seq
Forward (+)
14199223 .. 14200476
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGCCGCTGAGAAGAAGATGATCACCCTGAAGACCTCGGACGGCGAGGCGTTCGAGGTCGATGAGGCGGTTGCTATGGAGTCACAGACCATCAAGCACTTGGTGGAGGACTGCACCGACAATGTGATCCCTCTCCACAACGTGACCAGCCACATCCTCGCCAAGATCATCGAGTACTGCCGGAAGCATGTCGAGGGTCGCAAAGACGGCGACAGCACCGACCTCGGCCAGAGCGGCGATGAGACTCTCAAGAAGTTTGACGAGGACTTCGTCAACGAGATAAAAGCTGATCAGAATGTCCTCTTTGATCTGATATTAGCTGCGAACTATCTAAACATCAAGAGCCTGCTGGATCTGACCTGCCAGACTGTGGCTGACATCGATCAAGGGAAGGACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

4.52

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 6 - 64 3.6e-26 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018498)

Species Orthologous Gene IDs
malus_domestica MD03G1144800.v1.1
pyrus_communis pycom10g10750
rosa_laevigata RLG00000007686 RLG00000011605 RLG00000019611 RLG00000036468
rosa_samantha Rh5CG207300 Rh5DG189300 Rh6BG147000 Rh6DG131700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 370
AccBSI CCGCTC 1 cut(s) 234
AciI CCGC 3 cut(s) 6, 68, 234
AclWI GGATC 2 cut(s) 121, 360
AcoI YGGCCR 2 cut(s) 3, 226
AcuI CTGAAG 1 cut(s) 50
AdeI CACNNNGTG 2 cut(s) 103, 142
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 1 cut(s) 370
AluBI AGCT 2 cut(s) 287, 320
AluI AGCT 2 cut(s) 287, 320
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 2 cut(s) 121, 360
AoxI GGCC 2 cut(s) 3, 226
ApeKI GCWGC 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 98
BceAI ACGGC 2 cut(s) 58, 223
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BclI TGATCA 2 cut(s) 21, 289
BcoDI GTCTC 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 368
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 3 cut(s) 6, 235, 321
BlsI GCNGC 3 cut(s) 7, 236, 322
BmcAI AGTACT 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 36, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 36, 223
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 370
BseXI GCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 97
BshFI GGCC 2 cut(s) 5, 228
BshVI ATCGAT 1 cut(s) 381
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 236
BsnI GGCC 2 cut(s) 5, 228
Bsp143I GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
BspACI CCGC 3 cut(s) 6, 68, 234
BspANI GGCC 2 cut(s) 5, 228
BspDI ATCGAT 1 cut(s) 381
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 2 cut(s) 121, 360
BsrBI CCGCTC 1 cut(s) 234
BssECI CCNNGG 2 cut(s) 36, 223
BssMI GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
Bst4CI ACNGT 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 7 cut(s) 24, 129, 168, 292, 310, 355, 385
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
BstMWI GCNNNNNNNGC 2 cut(s) 207, 234
BstNSI RCATGY 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
Bsu15I ATCGAT 1 cut(s) 381
BsuRI GGCC 2 cut(s) 5, 228
BsuTUI ATCGAT 1 cut(s) 381
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 347
ClaI ATCGAT 1 cut(s) 381
Csp6I GTAC 1 cut(s) 175
CviAII CATG 1 cut(s) 188
CviJI RGCY 7 cut(s) 5, 150, 228, 287, 320, 345, 374
CviKI_1 RGCY 7 cut(s) 5, 150, 228, 287, 320, 345, 374
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 9
DpnI GATC 7 cut(s) 23, 128, 167, 291, 309, 354, 384
DpnII GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
DraIII CACNNNGTG 2 cut(s) 103, 142
EaeI YGGCCR 2 cut(s) 3, 226
Eco57I CTGAAG 1 cut(s) 50
FaeI CATG 1 cut(s) 191
FaiI YATR 2 cut(s) 77, 189
FatI CATG 1 cut(s) 187
FbaI TGATCA 2 cut(s) 21, 289
Fnu4HI GCNGC 3 cut(s) 6, 235, 321
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 6, 235, 321
GluI GCNGC 3 cut(s) 6, 235, 321
HaeIII GGCC 2 cut(s) 5, 228
HapII CCGG 1 cut(s) 181
Hin1II CATG 1 cut(s) 191
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 2 cut(s) 80, 244
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 4 cut(s) 40, 294, 312, 357
Hpy188III TCNNGA 2 cut(s) 250, 340
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 1 cut(s) 385
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 234
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 1 cut(s) 191
Ksp22I TGATCA 2 cut(s) 21, 289
Kzo9I GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
LpnPI CCDG 8 cut(s) 41, 160, 194, 242, 335, 359, 373, 377
Lsp1109I GCAGC 1 cut(s) 307
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 81, 142
MalI GATC 7 cut(s) 23, 128, 167, 291, 309, 354, 384
MbiI CCGCTC 1 cut(s) 234
MboI GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
MboII GAAGA 3 cut(s) 25, 28, 43
MflI RGATCY 1 cut(s) 352
MlyI GAGTC 2 cut(s) 89, 238
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 207, 234
NdeII GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
NlaIII CATG 1 cut(s) 191
NmeAIII GCCGAG 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 81, 142
NspI RCATGY 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PflFI GACNNNGTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 3 cut(s) 7, 236, 322
PleI GAGTC 2 cut(s) 88, 238
PpsI GAGTC 2 cut(s) 88, 238
PsuI RGATCY 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SatI GCNGC 3 cut(s) 6, 235, 321
Sau3AI GATC 7 cut(s) 21, 126, 165, 289, 307, 352, 382
ScaI AGTACT 1 cut(s) 176
SchI GAGTC 2 cut(s) 89, 238
SetI ASST 8 cut(s) 38, 60, 144, 225, 289, 322, 362, 401
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SsiI CCGC 3 cut(s) 6, 68, 234
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 144
TaqI TCGA 5 cut(s) 54, 60, 171, 192, 381
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 8, 237
TseFI GTSAC 2 cut(s) 81, 142
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 2 cut(s) 81, 142
Tth111I GACNNNGTC 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 370
XceI RCATGY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 97
ZrmI AGTACT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.