Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015877

Physical Location & Seq

Genomic Coordinates Forward (+)

16698943 .. 16700702

Gene Structure 1760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGGAAGGGCTCGGCGGAGAGGAGTACTTGTTCAAGGTGGTGCTGATAGGCGACTCGGCGGTGGGCAAGTCGAACCTCCTCTCGCGGTTCGCCCGCAACGAGTTCGACCCCAACAACAAGGCCACAATTGGGGTCGAGTTTCTGACCCAGGAGTTGGAAATCGACGGAAAAATGATCAAGGCTCAGATCTGGGACACCGCCGGCCAAGAGCGCTTCAGGGCCGTCACCTCTGCTTACTACAGAGGCGCTGTCGGCGCCCTGATTGTGTACGACATCAGTAGGAAGACTACCTTTGAGAGCGTCAAGCGCTGGCTCGATGAGCTCACTACTCATTGTGAAACAACCGTAGCAAGGATGTTGGTAGGAAACAAATGTGATTTGGAGGATATTAGGGCTGTGAGCATGGAAGATGGCAAAAGCCTGGCTGAGGAAGAAGGGCTATTCTTCATGGAGACTTCTGCGCTTAATTCCACCAACGTTCAAACCGCTTTTGAGATAGTTATCCGGGAGATTTACAACAATGTCAGCAGGAAAATCCTAAATTCTGATTCCTACAAGGCCGAGTTGTCTGTAAACCGAGTAAGCCTGGTGAAAAACGGGGCAGACTCGAAAGGCAGGATGAATCTCTCTTGTTGTGGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0005798 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006891 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0031410 GO:0031982 GO:0031984 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0048219 GO:0050896 GO:0051179 GO:0051234 GO:0071944 GO:0097159 GO:0097367 GO:0097708 GO:0098791 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.89

Weight (kDa)

5.06

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	9 - 168	8e-14	ADP-ribosylation factor family
Ras	PF00071	13 - 173	5.2e-63	Ras family
Roc	PF08477	13 - 127	2.1e-35	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015877)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07410
fragaria_vesca	FvH4_2g17980
malus_domestica	MD05G1163800.v1.1
prunus_persica	Prupe.8G192300_v2.0.a1
pyrus_communis	pycom05g15300 pycom10g13250
rosa_chinensis	RchiOBHm_Chr6g0283281
rosa_laevigata	RLG00000012834
rosa_roxburghii	Rroxscaffold_7G00185600
rosa_rugosa	Rorug06G0152800
rosa_samantha	Rh6AG265300 Rh6BG268300 Rh6CG267600 Rh6DG261000
rosa_wichuraiana	Rw6G022990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccII	CGCG	1 cut(s)	88
AciI	CCGC	6 cut(s)	18, 62, 88, 97, 201, 489
AclI	AACGTT	1 cut(s)	480
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	29, 272
AfeI	AGCGCT	2 cut(s)	215, 311
AfiI	CCNNNNNNNGG	4 cut(s)	132, 157, 354, 430
AgsI	TTSAA	2 cut(s)	37, 485
AjnI	CCWGG	3 cut(s)	150, 423, 588
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	327
Alw26I	GTCTC	1 cut(s)	449
Aor51HI	AGCGCT	2 cut(s)	215, 311
AoxI	GGCC	4 cut(s)	123, 205, 222, 561
ApoI	RAATTY	1 cut(s)	544
AspLEI	GCGC	5 cut(s)	216, 251, 260, 312, 466
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	220, 604
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	15, 327
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	429
BccI	CCATC	1 cut(s)	407
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	3 cut(s)	152, 425, 590
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	509
BcoDI	GTCTC	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	4 cut(s)	217, 252, 261, 313
BglII	AGATCT	1 cut(s)	189
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	4 cut(s)	152, 425, 509, 590
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	4 cut(s)	152, 425, 509, 590
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	503
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 157, 354, 430
Bse118I	RCCGGY	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	503
BseBI	CCWGG	3 cut(s)	152, 425, 590
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	363, 627
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	4 cut(s)	132, 157, 354, 430
BseMII	CTCAG	2 cut(s)	200, 420
BseRI	GAGGAG	2 cut(s)	38, 71
Bsh1236I	CGCG	1 cut(s)	88
BshFI	GGCC	4 cut(s)	125, 207, 224, 563
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	204, 508
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	132, 157, 354, 430
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	4 cut(s)	125, 207, 224, 563
Bsp1286I	GDGCHC	2 cut(s)	15, 327
Bsp143I	GATC	2 cut(s)	177, 189
BspACI	CCGC	6 cut(s)	18, 62, 88, 97, 201, 489
BspANI	GGCC	4 cut(s)	125, 207, 224, 563
BspCNI	CTCAG	2 cut(s)	199, 421
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	177, 189
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	3 cut(s)	152, 425, 590
Bst4CI	ACNGT	1 cut(s)	349
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	97, 205, 314
BstDEI	CTNAG	2 cut(s)	186, 429
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	363, 627
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	4 cut(s)	217, 252, 261, 313
BstHHI	GCGC	5 cut(s)	216, 251, 260, 312, 466
BstKTI	GATC	2 cut(s)	180, 192
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	2 cut(s)	177, 189
BstMWI	GCNNNNNNNGC	5 cut(s)	213, 255, 257, 309, 322
BstNI	CCWGG	3 cut(s)	152, 425, 590
BstSCI	CCNGG	4 cut(s)	150, 423, 507, 588
BstSFI	CTRYAG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	125, 207, 224, 563
BtsCI	GGATG	2 cut(s)	363, 627
Cac8I	GCNNGC	3 cut(s)	97, 205, 314
CfoI	GCGC	5 cut(s)	216, 251, 260, 312, 466
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	28, 271
CviAII	CATG	2 cut(s)	406, 451
CviQI	GTAC	2 cut(s)	28, 271
DdeI	CTNAG	2 cut(s)	186, 429
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	2 cut(s)	179, 191
DpnII	GATC	2 cut(s)	177, 189
EaeI	YGGCCR	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	2 cut(s)	15, 327
Eco47III	AGCGCT	2 cut(s)	215, 311
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	325
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRII	CCWGG	3 cut(s)	150, 423, 588
EcoT38I	GRGCYC	2 cut(s)	15, 327
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
FaeI	CATG	2 cut(s)	409, 454
FaiI	YATR	2 cut(s)	407, 452
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	405, 450
FauI	CCCGC	1 cut(s)	104
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	2 cut(s)	370, 634
FriOI	GRGCYC	2 cut(s)	15, 327
GlaI	GCGC	5 cut(s)	215, 250, 259, 311, 465
HaeII	RGCGCY	4 cut(s)	217, 252, 261, 313
HaeIII	GGCC	4 cut(s)	125, 207, 224, 563
HapII	CCGG	2 cut(s)	204, 508
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	5 cut(s)	216, 251, 260, 312, 466
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	409, 454
Hin6I	GCGC	5 cut(s)	214, 249, 258, 310, 464
HinP1I	GCGC	5 cut(s)	214, 249, 258, 310, 464
HinfI	GANTC	4 cut(s)	56, 551, 608, 625
HpaII	CCGG	2 cut(s)	204, 508
HphI	GGTGA	2 cut(s)	220, 604
Hpy166II	GTNNAC	2 cut(s)	271, 577
Hpy188I	TCNGA	3 cut(s)	147, 189, 550
Hpy8I	GTNNAC	2 cut(s)	271, 577
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	5 cut(s)	213, 255, 257, 309, 322
HpyF3I	CTNAG	2 cut(s)	186, 429
HpySE526I	ACGT	1 cut(s)	480
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	409, 454
HspAI	GCGC	5 cut(s)	214, 249, 258, 310, 464
KasI	GGCGCC	1 cut(s)	257
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 189
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	2 cut(s)	179, 191
MboI	GATC	2 cut(s)	177, 189
MboII	GAAGA	4 cut(s)	298, 422, 439, 446
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	2 cut(s)	15, 327
MluCI	AATT	3 cut(s)	129, 469, 544
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	2 cut(s)	50, 602
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	7 cut(s)	16, 89, 92, 239, 241, 379, 424
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	1 cut(s)	468
MspI	CCGG	2 cut(s)	204, 508
MspR9I	CCNGG	4 cut(s)	152, 425, 509, 590
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	3 cut(s)	152, 425, 590
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	213, 255, 257, 309, 322
NaeI	GCCGGC	1 cut(s)	205
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	2 cut(s)	177, 189
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	2 cut(s)	409, 454
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	2 cut(s)	38, 589
NmuCI	GTSAC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	551, 625
PflMI	CCANNNNNTGG	1 cut(s)	157
PfoI	TCCNGGA	1 cut(s)	507
PleI	GAGTC	2 cut(s)	50, 602
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	2 cut(s)	50, 602
Psp124BI	GAGCTC	1 cut(s)	327
Psp1406I	AACGTT	1 cut(s)	480
Psp6I	CCWGG	3 cut(s)	150, 423, 588
PspGI	CCWGG	3 cut(s)	150, 423, 588
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	189
RsaI	GTAC	2 cut(s)	29, 272
RsaNI	GTAC	2 cut(s)	28, 271
SacI	GAGCTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	468
Sau3AI	GATC	2 cut(s)	177, 189
Sau96I	GGNCC	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	2 cut(s)	50, 602
ScrFI	CCNGG	4 cut(s)	152, 425, 509, 590
SduI	GDGCHC	2 cut(s)	15, 327
SetI	ASST	6 cut(s)	42, 81, 233, 296, 327, 483
SfcI	CTRYAG	1 cut(s)	241
SfoI	GGCGCC	1 cut(s)	259
Sse9I	AATT	3 cut(s)	129, 469, 544
SsiI	CCGC	6 cut(s)	18, 62, 88, 97, 201, 489
SspDI	GGCGCC	1 cut(s)	257
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	4 cut(s)	150, 423, 507, 588
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	6 cut(s)	74, 108, 138, 165, 318, 611
TasI	AATT	3 cut(s)	129, 469, 544
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	551, 625
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	439, 638
TspGWI	ACGGA	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	544
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.