pycom10g16250

Bet1-like SNARE

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
19440509 .. 19442297
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGAATGCTCGAAGGGACTTCCGCGGCAACAAAGTTGCTCTTTTTGATGGCATTGAGGAGGGTGGCATCAGGGCCTCAGCTTCCTACTCCCATGAAATTGATGAACATGATAATGAAAGGGCTGTGGACGGGTTGCAAGATAGAGTCAATTTGCTGAAGAGATTGTCAGGTGATATACATGAGGAGGTGGAGACCCATAATCACATGTTGGACAGAATGGGAAATGATATGGATTCATCGAGGGGAGTGCTATCTGGTACAATGGACAAGTTTAAGATGGTCTTCGAGACCAAGTCAAGCAAGAGAATGTTTACGCTAGTCGCATCGTTTGTGGTCATATTCCTAGTCGTATATTATCTCACTAGGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

5.93

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012897)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 24
AciI CCGC 2 cut(s) 22, 24
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 259
AflIII ACRYGT 1 cut(s) 204
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 2 cut(s) 185, 281
AoxI GGCC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 274
BbvCI CCTCAGC 1 cut(s) 76
BccI CCATC 2 cut(s) 41, 271
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BcoDI GTCTC 2 cut(s) 185, 281
BfaI CTAG 3 cut(s) 317, 344, 363
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 72
BmsI GCATC 2 cut(s) 75, 332
BpiI GAAGAC 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 76
BsaI GGTCTC 2 cut(s) 185, 281
BsaJI CCNNGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 2 cut(s) 71, 197
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 74
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 185, 281
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 74
Bso31I GGTCTC 2 cut(s) 185, 281
BspACI CCGC 2 cut(s) 22, 24
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 89
BspFNI CGCG 1 cut(s) 24
BspTNI GGTCTC 2 cut(s) 185, 281
BssECI CCNNGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 76
BstDSI CCRYGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 24
BstMAI GTCTC 2 cut(s) 185, 281
BstNSI RCATGY 1 cut(s) 208
BstUI CGCG 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 274
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 72
Cfr42I CCGCGG 1 cut(s) 25
Csp6I GTAC 1 cut(s) 258
CviAII CATG 4 cut(s) 92, 107, 179, 205
CviJI RGCY 3 cut(s) 74, 80, 122
CviKI_1 RGCY 3 cut(s) 74, 80, 122
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco31I GGTCTC 2 cut(s) 185, 281
Eco57I CTGAAG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 72
FaeI CATG 4 cut(s) 95, 110, 182, 208
FaiI YATR 9 cut(s) 93, 108, 176, 180, 198, 206, 230, 338, 352
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 266, 298
FaqI GGGAC 1 cut(s) 29
FatI CATG 4 cut(s) 91, 106, 178, 204
Fnu4HI GCNGC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 3 cut(s) 317, 344, 363
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 74
Hin1II CATG 4 cut(s) 95, 110, 182, 208
HinfI GANTC 2 cut(s) 144, 233
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 127, 312
Hpy188III TCNNGA 1 cut(s) 286
Hpy8I GTNNAC 2 cut(s) 127, 312
HpyAV CCTTC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 4 cut(s) 95, 110, 182, 208
KspI CCGCGG 1 cut(s) 25
LpnPI CCDG 3 cut(s) 55, 153, 240
LweI GCATC 2 cut(s) 75, 332
MaeI CTAG 3 cut(s) 317, 344, 363
MboII GAAGA 2 cut(s) 169, 274
MluCI AATT 2 cut(s) 96, 148
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 6 cut(s) 49, 52, 85, 175, 178, 234
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 10
MvnI CGCG 1 cut(s) 24
NlaIII CATG 4 cut(s) 95, 110, 182, 208
NspI RCATGY 1 cut(s) 208
PciI ACATGT 1 cut(s) 204
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PscI ACATGT 1 cut(s) 204
PspPI GGNCC 1 cut(s) 72
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 111
SacII CCGCGG 1 cut(s) 25
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 1 cut(s) 153
SetI ASST 4 cut(s) 82, 172, 189, 368
SfaNI GCATC 2 cut(s) 75, 332
Sfr303I CCGCGG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 2 cut(s) 96, 148
SsiI CCGC 2 cut(s) 22, 24
SspMI CTAG 3 cut(s) 317, 344, 363
TaqI TCGA 3 cut(s) 10, 239, 285
TasI AATT 2 cut(s) 96, 148
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TspDTI ATGAA 5 cut(s) 17, 108, 117, 129, 225
Tth111I GACNNNGTC 1 cut(s) 292
XceI RCATGY 1 cut(s) 208
XspI CTAG 3 cut(s) 317, 344, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.