pycom10g17570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013488
Physical Location & Seq
Reverse (-)
20814188 .. 20815851
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 930 bp
ATGCCTACCATAACTTTAGTTATTTCCAATATATTTTTTAAATATTACATAACGGGCTATATTTATTTACTACCATATACAGTTGGGCTCTATAAAATCCCAAAGACCCCCTCCTTTCTCTCTCTCTCTCCCCCTCAGAAAACGAAGCTCTGTAAGGCCCCAGTAATGGCTGCTGATGTTAGCTCTCTGTTTCGGGTTCTTAGTGGGTACAGCGACGACCAACATCTGAGCGTTGGGAGTGATTCTAGTGGTGAGGAATCAACGGCTTTGATTACAAGAGACTTGCTTGGTGGTAGTGGGTCGTCTTCTTCCAAGCTTCCCAACGACTCCCAGGAACTGGACCTCGACTTGCAGGTCCCCAATGGCTGGGAAAAGCGCTTGGACTTGAAGTCAGGGAAAGTGTATCTTCAAAGGTGCAGTGCCCAAAATTCACATTCAAACTCAGATCAAAAGAGCCAAACCAATCGAACAGTTCCAAAGATGCAAGATTTGAACTTCCCTCCATCGGCGTCGTCGAAAATCCCACTAAATCTCTTTGATGAAACCAGCACTAACCTGGATTTGAAGTTAGTTTCATCATCACCACCACCCTCATGCAATTACCAGAGCCTATGCACTTTGGACAAGGTAAAATCCGCCCTCGAAAGAGCAGAGAAGGAGCCGATCAAGAGGCGGTCTTCGTCCATGTTGAAGTCATCGATGTCATCTTCGCCAACTTACTCATCGTCGTCGTCACCCATCAAAGAAACTCAGGAGGAGGACAGTGACAGTGAGGACAAGCAATTTGCATCACCATTTGCAGCAGGGTGCCCTGGTTGCTTATCTTATGTACTCACCATGAGAAATAACCCTAAATGTCCTCGGTGCAATTCGGTTGTTCCGCTACCAACGGTGAAGAAACCTCGGATCGATCTCAACAGATCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

33.87

Weight (kDa)

8.78

Isoelectric Point (pI)

61.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn-ribbon_GIR1 PF24747 268 - 294 6.2e-07 GIR1-like zinc ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013488)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79160
fragaria_vesca FvH4_3g15360
malus_domestica MD05G1223700.v1.1 MD10G1205200.v1.1
prunus_persica Prupe.4G136500_v2.0.a1
pyrus_communis pycom05g20660 pycom10g17570
rosa_chinensis RchiOBHm_Chr5g0025801
rosa_laevigata RLG00000032876
rosa_multiflora Rmu_sc0005610.1_g000005
rosa_roxburghii Rroxscaffold_1G00053400 Rroxscaffold_1G00054340
rosa_rugosa Rorug05G0088600
rosa_samantha Rh5AG180700 Rh5BG179300 Rh5CG197100 Rh5DG179000
rosa_wichuraiana Rw5G016390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 807
AccB7I CCANNNNNTGG 2 cut(s) 337, 366
AciI CCGC 3 cut(s) 636, 673, 881
AclWI GGATC 1 cut(s) 914
AcsI RAATTY 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 2 cut(s) 209, 831
AfeI AGCGCT 1 cut(s) 377
AfiI CCNNNNNNNGG 4 cut(s) 166, 337, 366, 505
AgsI TTSAA 6 cut(s) 388, 410, 438, 493, 565, 691
AhdI GACNNNNNGTC 1 cut(s) 388
AjnI CCWGG 3 cut(s) 330, 555, 811
AluBI AGCT 3 cut(s) 148, 183, 316
AluI AGCT 3 cut(s) 148, 183, 316
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 914
AlwNI CAGNNNCTG 1 cut(s) 337
Aor51HI AGCGCT 1 cut(s) 377
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 170, 800
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
AspLEI GCGC 1 cut(s) 378
AspS9I GGNCC 3 cut(s) 157, 340, 355
AsuHPI GGTGA 6 cut(s) 263, 573, 726, 783, 826, 904
AvaII GGWCC 2 cut(s) 340, 355
BaeGI GKGCMC 2 cut(s) 424, 812
BanI GGYRCC 1 cut(s) 807
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 2 cut(s) 297, 669
BbvI GCAGC 2 cut(s) 157, 812
BccI CCATC 2 cut(s) 511, 746
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 3 cut(s) 332, 557, 813
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 379
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 2 cut(s) 171, 801
BlsI GCNGC 2 cut(s) 172, 802
Bme1390I CCNGG 3 cut(s) 332, 557, 813
Bme18I GGWCC 2 cut(s) 340, 355
BmeRI GACNNNNNGTC 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 157, 340, 355
BmiI GGNNCC 4 cut(s) 159, 357, 660, 809
BmrFI CCNGG 3 cut(s) 332, 557, 813
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 2 cut(s) 471, 797
BmuI ACTGGG 1 cut(s) 155
BpiI GAAGAC 2 cut(s) 297, 669
Bsa29I ATCGAT 2 cut(s) 698, 909
BsaHI GRCGYC 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 330, 811, 860, 902
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 337, 366, 505
Bse1I ACTGG 2 cut(s) 161, 342
BseBI CCWGG 3 cut(s) 332, 557, 813
BseCI ATCGAT 2 cut(s) 698, 909
BseDI CCNNGG 4 cut(s) 330, 811, 860, 902
BseLI CCNNNNNNNGG 4 cut(s) 166, 337, 366, 505
BseMII CTCAG 4 cut(s) 149, 218, 456, 764
BseNI ACTGG 2 cut(s) 161, 342
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 2 cut(s) 424, 812
BseXI GCAGC 2 cut(s) 157, 812
BseYI CCCAGC 1 cut(s) 366
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 807
BshVI ATCGAT 2 cut(s) 698, 909
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 4 cut(s) 166, 337, 366, 505
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 158
Bsp1286I GDGCHC 3 cut(s) 90, 424, 812
Bsp143I GATC 5 cut(s) 445, 663, 906, 910, 920
BspACI CCGC 3 cut(s) 636, 673, 881
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 4 cut(s) 148, 219, 455, 763
BspDI ATCGAT 2 cut(s) 698, 909
BspLI GGNNCC 4 cut(s) 159, 357, 660, 809
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 914
BspT107I GGYRCC 1 cut(s) 807
BsrI ACTGG 2 cut(s) 161, 342
BssECI CCNNGG 4 cut(s) 330, 811, 860, 902
BssMI GATC 5 cut(s) 445, 663, 906, 910, 920
BssNI GRCGYC 1 cut(s) 509
Bst2UI CCWGG 3 cut(s) 332, 557, 813
Bst4CI ACNGT 5 cut(s) 82, 472, 764, 770, 892
BstACI GRCGYC 1 cut(s) 509
BstDEI CTNAG 5 cut(s) 135, 200, 227, 442, 750
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 5 cut(s) 448, 666, 909, 913, 923
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 5 cut(s) 445, 663, 906, 910, 920
BstMWI GCNNNNNNNGC 1 cut(s) 816
BstNI CCWGG 3 cut(s) 332, 557, 813
BstSCI CCNGG 3 cut(s) 330, 555, 811
BstSLI GKGCMC 2 cut(s) 424, 812
BstV1I GCAGC 2 cut(s) 157, 812
BstV2I GAAGAC 2 cut(s) 297, 669
Bsu15I ATCGAT 2 cut(s) 698, 909
BsuRI GGCC 1 cut(s) 158
BsuTUI ATCGAT 2 cut(s) 698, 909
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 3 cut(s) 424, 769, 775
BveI ACCTGC 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 337
CfoI GCGC 1 cut(s) 378
Cfr13I GGNCC 3 cut(s) 157, 340, 355
ClaI ATCGAT 2 cut(s) 698, 909
CseI GACGC 1 cut(s) 498
Csp6I GTAC 2 cut(s) 208, 830
CviAII CATG 3 cut(s) 594, 685, 838
CviQI GTAC 2 cut(s) 208, 830
DdeI CTNAG 5 cut(s) 135, 200, 227, 442, 750
DpnI GATC 5 cut(s) 447, 665, 908, 912, 922
DpnII GATC 5 cut(s) 445, 663, 906, 910, 920
DraI TTTAAA 1 cut(s) 40
DrdI GACNNNNNNGTC 1 cut(s) 353
DriI GACNNNNNGTC 1 cut(s) 388
DseDI GACNNNNNNGTC 1 cut(s) 353
Eam1105I GACNNNNNGTC 1 cut(s) 388
EciI GGCGGA 1 cut(s) 625
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 340, 355
Eco47III AGCGCT 1 cut(s) 377
EcoO109I RGGNCCY 2 cut(s) 157, 355
EcoRII CCWGG 3 cut(s) 330, 555, 811
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 3 cut(s) 597, 688, 841
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 593, 684, 837
Fnu4HI GCNGC 2 cut(s) 171, 801
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 171, 801
FspBI CTAG 1 cut(s) 246
GlaI GCGC 1 cut(s) 377
GluI GCNGC 2 cut(s) 171, 801
GsaI CCCAGC 1 cut(s) 370
HaeII RGCGCY 1 cut(s) 379
HaeIII GGCC 1 cut(s) 158
HgaI GACGC 1 cut(s) 498
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 509
Hin1II CATG 3 cut(s) 597, 688, 841
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 3 cut(s) 242, 257, 326
HphI GGTGA 6 cut(s) 263, 573, 726, 783, 826, 904
Hpy188I TCNGA 4 cut(s) 138, 228, 445, 906
Hpy188III TCNNGA 2 cut(s) 667, 752
Hpy99I CGWCG 5 cut(s) 218, 514, 517, 730, 733
HpyAV CCTTC 1 cut(s) 649
HpyCH4III ACNGT 5 cut(s) 82, 472, 764, 770, 892
HpyCH4V TGCA 8 cut(s) 352, 417, 484, 597, 615, 788, 800, 867
HpyF10VI GCNNNNNNNGC 1 cut(s) 816
HpyF3I CTNAG 5 cut(s) 135, 200, 227, 442, 750
Hsp92I GRCGYC 1 cut(s) 509
Hsp92II CATG 3 cut(s) 597, 688, 841
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 5 cut(s) 445, 663, 906, 910, 920
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 2 cut(s) 157, 812
LweI GCATC 2 cut(s) 471, 797
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 2 cut(s) 732, 764
MalI GATC 5 cut(s) 447, 665, 908, 912, 922
MboI GATC 5 cut(s) 445, 663, 906, 910, 920
MboII GAAGA 6 cut(s) 297, 300, 398, 669, 699, 907
MhlI GDGCHC 3 cut(s) 90, 424, 812
MluCI AATT 5 cut(s) 427, 598, 782, 868, 925
MlyI GAGTC 1 cut(s) 320
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 592
MspR9I CCNGG 3 cut(s) 332, 557, 813
MvaI CCWGG 3 cut(s) 332, 557, 813
MwoI GCNNNNNNNGC 1 cut(s) 816
NdeII GATC 5 cut(s) 445, 663, 906, 910, 920
NlaIII CATG 3 cut(s) 597, 688, 841
NlaIV GGNNCC 4 cut(s) 159, 357, 660, 809
NmuCI GTSAC 2 cut(s) 732, 764
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PfeI GAWTC 2 cut(s) 242, 257
PflMI CCANNNNNTGG 2 cut(s) 337, 366
PkrI GCNGC 2 cut(s) 172, 802
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PpuMI RGGWCCY 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 3 cut(s) 330, 555, 811
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 3 cut(s) 330, 555, 811
PspN4I GGNNCC 4 cut(s) 159, 357, 660, 809
PspPI GGNCC 3 cut(s) 157, 340, 355
PspPPI RGGWCCY 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 337
RsaI GTAC 2 cut(s) 209, 831
RsaNI GTAC 2 cut(s) 208, 830
RseI CAYNNNNRTG 1 cut(s) 592
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 171, 801
Sau3AI GATC 5 cut(s) 445, 663, 906, 910, 920
Sau96I GGNCC 3 cut(s) 157, 340, 355
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 332, 557, 813
SduI GDGCHC 3 cut(s) 90, 424, 812
SetI ASST 9 cut(s) 150, 185, 318, 345, 357, 416, 558, 630, 904
SfaNI GCATC 2 cut(s) 471, 797
SinI GGWCC 2 cut(s) 340, 355
SmiMI CAYNNNNRTG 1 cut(s) 592
Sse9I AATT 5 cut(s) 427, 598, 782, 868, 925
SsiI CCGC 3 cut(s) 636, 673, 881
SspI AATATT 1 cut(s) 44
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 330, 555, 811
TaaI ACNGT 5 cut(s) 82, 472, 764, 770, 892
TaqI TCGA 6 cut(s) 345, 466, 515, 642, 698, 909
TasI AATT 5 cut(s) 427, 598, 782, 868, 925
TatI WGTACW 1 cut(s) 829
TfiI GAWTC 2 cut(s) 242, 257
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 3 cut(s) 424, 769, 775
TseFI GTSAC 2 cut(s) 732, 764
TseI GCWGC 2 cut(s) 170, 800
Tsp45I GTSAC 2 cut(s) 732, 764
TspDTI ATGAA 2 cut(s) 555, 564
TspRI CASTG 3 cut(s) 424, 769, 775
Van91I CCANNNNNTGG 2 cut(s) 337, 366
VpaK11BI GGWCC 2 cut(s) 340, 355
XapI RAATTY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.