Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0018928

Physical Location & Seq

Genomic Coordinates Reverse (-)

21552123 .. 21554449

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18250.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGTTCCAATACGGCGCCGTCTAGCTCAGGAGGCGCCGGATCTACGGATGCAACGTCTACCAGGAGGCATTCCAAGCGACCCAAATATTCAAGATTTACTCAGCAGGAACTTCCAGCGTGCAAGCCAATTCTCACGCCACGATGGGTGATCTCAGCATTCATGCTCGTAAGCATTGTCTTCATTCCCATCGGAGTTGTTTCCCTCTTTGCTTCTCGAGATGTTGTTGAAATTGTTGATAGGTATGAGACTGATTGTATACCAACACCCGCTAGAGATGACAAGGTCAGGTTCATACAAGGGCCTGAAGTTAAAACATGTAACAGAACTCTAAAGGTATCAAAGCATATGAAGCAGCCTATATATGTATATTACCAGCTTGACAATTTTTACCAGAATCATCGCAGATATGTTAAGAGTCGAAGTGATCAACAGTTGAAAGATCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

151

Amino Acids

17.17

Weight (kDa)

9.83

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018928)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18250
rosa_chinensis	RchiOBHm_Chr6g0266591
rosa_multiflora	Rmu_sc0007223.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188280
rosa_samantha	Rh1BG247900 Rh1DG276300 Rh3AG031900 Rh3BG309700 Rh5DG429400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	16, 35
AccI	GTMKAC	2 cut(s)	59, 259
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	2 cut(s)	49, 437
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	2 cut(s)	17, 36
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	3 cut(s)	93, 230, 439
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	2 cut(s)	27, 379
AluI	AGCT	2 cut(s)	27, 379
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	2 cut(s)	49, 437
Ama87I	CYCGRG	1 cut(s)	216
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	355
AspLEI	GCGC	2 cut(s)	19, 38
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	216
BanI	GGYRCC	2 cut(s)	16, 35
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	2 cut(s)	138, 197
BceAI	ACGGC	2 cut(s)	4, 30
BciT130I	CCWGG	1 cut(s)	64
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	2 cut(s)	24, 273
BfoI	RGCGCY	2 cut(s)	20, 39
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	18, 37
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	28
BsaHI	GRCGYC	2 cut(s)	17, 36
BseBI	CCWGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	55
BseMII	CTCAG	3 cut(s)	42, 116, 168
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	1 cut(s)	304
BshNI	GGYRCC	2 cut(s)	16, 35
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	242
BsmI	GAATGC	2 cut(s)	70, 158
BsnI	GGCC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	41, 150, 427, 442
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	3 cut(s)	41, 115, 167
BspLI	GGNNCC	2 cut(s)	18, 37
BspPI	GGATC	2 cut(s)	49, 437
BspT107I	GGYRCC	2 cut(s)	16, 35
BssMI	GATC	4 cut(s)	41, 150, 427, 442
BssNAI	GTATAC	1 cut(s)	260
BssNI	GRCGYC	2 cut(s)	17, 36
Bst1107I	GTATAC	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	435
BstACI	GRCGYC	2 cut(s)	17, 36
BstC8I	GCNNGC	2 cut(s)	121, 125
BstDEI	CTNAG	3 cut(s)	28, 102, 154
BstF5I	GGATG	1 cut(s)	55
BstH2I	RGCGCY	2 cut(s)	20, 39
BstHHI	GCGC	2 cut(s)	19, 38
BstKTI	GATC	4 cut(s)	44, 153, 430, 445
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	4 cut(s)	41, 150, 427, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 76, 352
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	2 cut(s)	41, 442
BstYI	RGATCY	2 cut(s)	41, 442
BstZ17I	GTATAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	121, 125
CfoI	GCGC	2 cut(s)	19, 38
Cfr13I	GGNCC	1 cut(s)	302
CviAII	CATG	2 cut(s)	163, 318
CviJI	RGCY	5 cut(s)	27, 127, 304, 358, 379
CviKI_1	RGCY	5 cut(s)	27, 127, 304, 358, 379
DdeI	CTNAG	3 cut(s)	28, 102, 154
DinI	GGCGCC	2 cut(s)	18, 37
DpnI	GATC	4 cut(s)	43, 152, 429, 444
DpnII	GATC	4 cut(s)	41, 150, 427, 442
Eco57I	CTGAAG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	62
EgeI	GGCGCC	2 cut(s)	18, 37
EheI	GGCGCC	2 cut(s)	18, 37
FaeI	CATG	2 cut(s)	166, 321
FatI	CATG	2 cut(s)	162, 317
FauI	CCCGC	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	59, 259
Fnu4HI	GCNGC	1 cut(s)	356
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	2 cut(s)	24, 273
GlaI	GCGC	2 cut(s)	18, 37
GluI	GCNGC	1 cut(s)	356
HaeII	RGCGCY	2 cut(s)	20, 39
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	1 cut(s)	39
HhaI	GCGC	2 cut(s)	19, 38
Hin1I	GRCGYC	2 cut(s)	17, 36
Hin1II	CATG	2 cut(s)	166, 321
Hin6I	GCGC	2 cut(s)	17, 36
HinP1I	GCGC	2 cut(s)	17, 36
HinfI	GANTC	2 cut(s)	397, 418
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	60, 260
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	4 cut(s)	30, 93, 216, 218
Hpy8I	GTNNAC	2 cut(s)	60, 260
HpyCH4III	ACNGT	1 cut(s)	435
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	53, 123
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 76, 352
HpyF3I	CTNAG	3 cut(s)	28, 102, 154
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	2 cut(s)	17, 36
Hsp92II	CATG	2 cut(s)	166, 321
HspAI	GCGC	2 cut(s)	17, 36
KasI	GGCGCC	2 cut(s)	16, 35
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	41, 150, 427, 442
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	24, 273
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	4 cut(s)	43, 152, 429, 444
MboI	GATC	4 cut(s)	41, 150, 427, 442
MboII	GAAGA	1 cut(s)	172
MflI	RGATCY	2 cut(s)	41, 442
MluCI	AATT	3 cut(s)	129, 231, 385
Mly113I	GGCGCC	2 cut(s)	17, 36
MlyI	GAGTC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	26, 60, 215
MseI	TTAA	2 cut(s)	312, 414
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	2 cut(s)	70, 158
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	33, 76, 352
NarI	GGCGCC	2 cut(s)	17, 36
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	4 cut(s)	41, 150, 427, 442
NlaIII	CATG	2 cut(s)	166, 321
NlaIV	GGNNCC	2 cut(s)	18, 37
NspI	RCATGY	1 cut(s)	321
PaeR7I	CTCGAG	1 cut(s)	216
PciI	ACATGT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	2 cut(s)	70, 158
PfeI	GAWTC	1 cut(s)	397
PflFI	GACNNNGTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	1 cut(s)	426
PluTI	GGCGCC	2 cut(s)	20, 39
PpsI	GAGTC	1 cut(s)	426
PscI	ACATGT	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	18, 37
PspPI	GGNCC	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	41, 442
PsyI	GACNNNGTC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	312, 414
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	4 cut(s)	41, 150, 427, 442
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	7 cut(s)	29, 59, 245, 288, 293, 339, 381
SfaNI	GCATC	1 cut(s)	40
SfoI	GGCGCC	2 cut(s)	18, 37
Sfr274I	CTCGAG	1 cut(s)	216
SlaI	CTCGAG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	129, 231, 385
SsiI	CCGC	1 cut(s)	270
SspDI	GGCGCC	2 cut(s)	16, 35
SspI	AATATT	1 cut(s)	89
SspMI	CTAG	2 cut(s)	24, 273
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	435
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	2 cut(s)	217, 421
TasI	AATT	3 cut(s)	129, 231, 385
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	2 cut(s)	312, 414
Tru9I	TTAA	2 cut(s)	312, 414
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	4 cut(s)	151, 172, 283, 365
TspGWI	ACGGA	1 cut(s)	62
Tth111I	GACNNNGTC	1 cut(s)	284
XceI	RCATGY	1 cut(s)	321
XhoI	CTCGAG	1 cut(s)	216
XmiI	GTMKAC	2 cut(s)	59, 259
XspI	CTAG	2 cut(s)	24, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.