Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007223.1

Orthogroup ID

OG0018928

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2187

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007223.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 404 bp

atgagttccaatacggcgccgtccagctcagcaggcgctggatctgccgattcagcagctaccaggaggtccaagcgccccaaatattccagatttactcagcaggaacttccagcatgcaagccaattctcacaccaaaatgggtcatctcagcattcatgctcgttgcaatcgtcttcattcccatcggagttgctaccctatttgcttcccgagatgttgttgaaattgttgatcgatatgaaacggattgcataccaccgtcctctaggaatgatatggtcaaatacatccaaaccccaggaaataaaacatgcagcagaactctgacggtaaaaaaacacatgaagcagcctatatatgtatattaccagcttgataatttctatcagaatcatcgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

134

Amino Acids

15.07

Weight (kDa)

9.71

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018928)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18250
rosa_chinensis	RchiOBHm_Chr6g0266591
rosa_multiflora	Rmu_sc0007223.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188280
rosa_samantha	Rh1BG247900 Rh1DG276300 Rh3AG031900 Rh3BG309700 Rh5DG429400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	17
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	62, 301
AluBI	AGCT	3 cut(s)	27, 59, 376
AluI	AGCT	3 cut(s)	27, 59, 376
AlwI	GGATC	1 cut(s)	49
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	56, 318, 352
AspLEI	GCGC	3 cut(s)	19, 38, 78
AspS9I	GGNCC	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	68, 330, 364
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	2 cut(s)	4, 30
BciT130I	CCWGG	2 cut(s)	64, 303
BfaI	CTAG	1 cut(s)	270
BfoI	RGCGCY	3 cut(s)	20, 39, 79
BisI	GCNGC	3 cut(s)	57, 319, 353
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	3 cut(s)	58, 320, 354
Bme1390I	CCNGG	2 cut(s)	64, 303
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	2 cut(s)	64, 303
BpiI	GAAGAC	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	64, 303
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	291
BseMII	CTCAG	3 cut(s)	42, 113, 165
BseXI	GCAGC	3 cut(s)	68, 330, 364
BshNI	GGYRCC	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	213
Bsp143I	GATC	2 cut(s)	41, 235
Bsp1720I	GCTNAGC	1 cut(s)	28
BspCNI	CTCAG	3 cut(s)	41, 112, 164
BspDI	ATCGAT	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	41, 235
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	2 cut(s)	64, 303
Bst4CI	ACNGT	2 cut(s)	264, 334
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	34, 118, 122
BstDEI	CTNAG	3 cut(s)	28, 99, 151
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	3 cut(s)	20, 39, 79
BstHHI	GCGC	3 cut(s)	19, 38, 78
BstKTI	GATC	2 cut(s)	44, 238
BstMBI	GATC	2 cut(s)	41, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 44, 53
BstNI	CCWGG	2 cut(s)	64, 303
BstNSI	RCATGY	2 cut(s)	120, 318
BstSCI	CCNGG	2 cut(s)	62, 301
BstV1I	GCAGC	3 cut(s)	68, 330, 364
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	34, 118, 122
CaiI	CAGNNNCTG	1 cut(s)	38
CfoI	GCGC	3 cut(s)	19, 38, 78
Cfr13I	GGNCC	1 cut(s)	69
ClaI	ATCGAT	1 cut(s)	238
CviAII	CATG	4 cut(s)	117, 160, 315, 346
CviJI	RGCY	5 cut(s)	27, 59, 124, 355, 376
CviKI_1	RGCY	5 cut(s)	27, 59, 124, 355, 376
DdeI	CTNAG	3 cut(s)	28, 99, 151
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	2 cut(s)	43, 237
DpnII	GATC	2 cut(s)	41, 235
Eco47I	GGWCC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	62, 301
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
FaeI	CATG	4 cut(s)	120, 163, 318, 349
FatI	CATG	4 cut(s)	116, 159, 314, 345
Fnu4HI	GCNGC	3 cut(s)	57, 319, 353
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	57, 319, 353
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	3 cut(s)	18, 37, 77
GluI	GCNGC	3 cut(s)	57, 319, 353
HaeII	RGCGCY	3 cut(s)	20, 39, 79
HhaI	GCGC	3 cut(s)	19, 38, 78
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	4 cut(s)	120, 163, 318, 349
Hin6I	GCGC	3 cut(s)	17, 36, 76
HinP1I	GCGC	3 cut(s)	17, 36, 76
HinfI	GANTC	2 cut(s)	50, 394
Hpy188I	TCNGA	3 cut(s)	191, 330, 393
Hpy188III	TCNNGA	2 cut(s)	90, 213
HpyCH4III	ACNGT	2 cut(s)	264, 334
HpyCH4V	TGCA	4 cut(s)	120, 170, 255, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 44, 53
HpyF3I	CTNAG	3 cut(s)	28, 99, 151
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	120, 163, 318, 349
HspAI	GCGC	3 cut(s)	17, 36, 76
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	41, 235
Lsp1109I	GCAGC	3 cut(s)	68, 330, 364
MaeI	CTAG	1 cut(s)	270
MalI	GATC	2 cut(s)	43, 237
MboI	GATC	2 cut(s)	41, 235
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	41
MluCI	AATT	3 cut(s)	126, 228, 382
Mly113I	GGCGCC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	60, 277
MslI	CAYNNNNRTG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	64, 303
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	2 cut(s)	64, 303
MwoI	GCNNNNNNNGC	3 cut(s)	33, 44, 53
NarI	GGCGCC	1 cut(s)	17
NdeII	GATC	2 cut(s)	41, 235
NlaIII	CATG	4 cut(s)	120, 163, 318, 349
NlaIV	GGNNCC	1 cut(s)	18
NspI	RCATGY	2 cut(s)	120, 318
PaeI	GCATGC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	50, 394
PkrI	GCNGC	3 cut(s)	58, 320, 354
PluTI	GGCGCC	1 cut(s)	20
Psp6I	CCWGG	2 cut(s)	62, 301
PspGI	CCWGG	2 cut(s)	62, 301
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	69
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	139
SatI	GCNGC	3 cut(s)	57, 319, 353
Sau3AI	GATC	2 cut(s)	41, 235
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	64, 303
SetI	ASST	4 cut(s)	29, 61, 71, 378
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	69
SmiMI	CAYNNNNRTG	1 cut(s)	139
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	3 cut(s)	126, 228, 382
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	270
StyD4I	CCNGG	2 cut(s)	62, 301
TaaI	ACNGT	2 cut(s)	264, 334
TaqI	TCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	126, 228, 382
TfiI	GAWTC	2 cut(s)	50, 394
TseI	GCWGC	3 cut(s)	56, 318, 352
TspDTI	ATGAA	4 cut(s)	148, 169, 258, 362
TspGWI	ACGGA	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	69
XceI	RCATGY	2 cut(s)	120, 318
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.