Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018928

Physical Location & Seq

Genomic Coordinates Forward (+)

49690773 .. 49691849

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG276300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGTTCCAATACGGCGCCGTCGAGCTCAGGAGGCGCTAGATCTGCCGATTCAGCTGCTCCCAGGAGGTCCAAGCGGCCTAAATATTCAAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACGCCAAATTGGGTAATCTCAGCTTTCATGCTCGTTGCAATCGTTTTGATAAACATCGGAGTTGCTACCCTATTTGCTTCCCGAGATGTTGTTGAAATTGTTGATCGATATGAAGCTGATTGCATACCAGCGTCCTCTAGAAGTGTTAAGGTCATATACATCCAGACCTCAGGAAATAAAACATGCAACAGAACTCTTGATGGTAAGACCTTCTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

117

Amino Acids

12.75

Weight (kDa)

9.78

Isoelectric Point (pI)

61.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018928)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18250
rosa_chinensis	RchiOBHm_Chr6g0266591
rosa_multiflora	Rmu_sc0007223.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188280
rosa_samantha	Rh1BG247900 Rh1DG276300 Rh3AG031900 Rh3BG309700 Rh5DG429400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	17
AgsI	TTSAA	2 cut(s)	90, 227
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	27, 56, 155, 248
AluI	AGCT	4 cut(s)	27, 56, 155, 248
Alw21I	GWGCWC	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	19, 38
AspS9I	GGNCC	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	69
AxyI	CCTNAGG	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	2 cut(s)	4, 30
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	2 cut(s)	39, 270
BfoI	RGCGCY	2 cut(s)	20, 39
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	2 cut(s)	57, 77
BlsI	GCNGC	2 cut(s)	58, 78
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	301
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	291
BseJI	GATNNNNATC	1 cut(s)	185
BseMII	CTCAG	4 cut(s)	42, 113, 165, 315
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	213
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	2 cut(s)	41, 235
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	4 cut(s)	41, 112, 164, 314
BspDI	ATCGAT	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	41, 235
BssNI	GRCGYC	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	64
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	118, 122
BstDEI	CTNAG	4 cut(s)	28, 99, 151, 301
BstF5I	GGATG	1 cut(s)	291
BstH2I	RGCGCY	2 cut(s)	20, 39
BstHHI	GCGC	2 cut(s)	19, 38
BstKTI	GATC	2 cut(s)	44, 238
BstMBI	GATC	2 cut(s)	41, 235
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 44, 53
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	2 cut(s)	120, 318
BstSCI	CCNGG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
Bsu15I	ATCGAT	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	118, 122
CfoI	GCGC	2 cut(s)	19, 38
Cfr13I	GGNCC	1 cut(s)	69
ClaI	ATCGAT	1 cut(s)	238
CseI	GACGC	1 cut(s)	252
CviAII	CATG	3 cut(s)	117, 160, 315
CviJI	RGCY	6 cut(s)	27, 56, 79, 124, 155, 248
CviKI_1	RGCY	6 cut(s)	27, 56, 79, 124, 155, 248
DdeI	CTNAG	4 cut(s)	28, 99, 151, 301
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	2 cut(s)	43, 237
DpnII	GATC	2 cut(s)	41, 235
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	213
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	29
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
FaeI	CATG	3 cut(s)	120, 163, 318
FaiI	YATR	7 cut(s)	118, 161, 243, 257, 287, 289, 316
FalI	AAGNNNNNCTT	1 cut(s)	329
FatI	CATG	3 cut(s)	116, 159, 314
Fnu4HI	GCNGC	2 cut(s)	57, 77
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	57, 77
FspBI	CTAG	2 cut(s)	39, 270
GlaI	GCGC	2 cut(s)	18, 37
GluI	GCNGC	2 cut(s)	57, 77
HaeII	RGCGCY	2 cut(s)	20, 39
HaeIII	GGCC	1 cut(s)	79
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	2 cut(s)	19, 38
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	120, 163, 318
Hin6I	GCGC	2 cut(s)	17, 36
HinP1I	GCGC	2 cut(s)	17, 36
HinfI	GANTC	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	7 cut(s)	30, 90, 213, 270, 295, 303, 329
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	120, 170, 255, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 44, 53
HpyF3I	CTNAG	4 cut(s)	28, 99, 151, 301
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	120, 163, 318
HspAI	GCGC	2 cut(s)	17, 36
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	41, 235
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	8 cut(s)	15, 49, 76, 89, 126, 273, 288, 308
Lsp1109I	GCAGC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	39, 270
MalI	GATC	2 cut(s)	43, 237
MboI	GATC	2 cut(s)	41, 235
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	3 cut(s)	126, 139, 228
Mly113I	GGCGCC	1 cut(s)	17
MnlI	CCTC	4 cut(s)	26, 60, 277, 310
MseI	TTAA	2 cut(s)	279, 352
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	33, 44, 53
NarI	GGCGCC	1 cut(s)	17
NdeII	GATC	2 cut(s)	41, 235
NlaIII	CATG	3 cut(s)	120, 163, 318
NlaIV	GGNNCC	1 cut(s)	18
NspI	RCATGY	2 cut(s)	120, 318
PaeI	GCATGC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 171
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	58, 78
PluTI	GGCGCC	1 cut(s)	20
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	279, 352
SatI	GCNGC	2 cut(s)	57, 77
Sau3AI	GATC	2 cut(s)	41, 235
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	8 cut(s)	29, 58, 71, 157, 250, 285, 302, 344
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	1 cut(s)	69
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	3 cut(s)	126, 139, 228
SsiI	CCGC	1 cut(s)	76
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	2 cut(s)	39, 270
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	62
TaqI	TCGA	2 cut(s)	23, 238
TasI	AATT	3 cut(s)	126, 139, 228
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	279, 352
Tru9I	TTAA	2 cut(s)	279, 352
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	3 cut(s)	148, 258, 338
VpaK11BI	GGWCC	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	269
XceI	RCATGY	2 cut(s)	120, 318
XspI	CTAG	2 cut(s)	39, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.