Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0018928

Physical Location & Seq

Genomic Coordinates Reverse (-)

31394898 .. 31431345

Gene Structure 36448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG309700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATGTGCAGTCATCAAGGTGGAGGTCGATCTTGATCCAGCGTGGTTCAGAACCAAATCTTCACCTCCAGATTTTTGTTGTTCCGTCAGGGAGGGCAACGAAGAGTTTGGGGAGTTTATCCAAAATTGCATGGGCTAACTTGATGGCAATGTCGGCGCGTCACAAAGCGTATCGGCGAGGTACCTCGTCGTGGATAGGAAACTTGGGCGTCTTGCTTCACAGTGATTTGGTGTCTCGGCTGCCGGTGTCGAGGAGAGTACAAGTCCTATCCTATCCAACATATATGTCTAACAAGCAGGTACCCAATGATGTCCCTATGATGAGCAACACACGGGGAAGCAAGCACAATGCCGACAATGTTGAGTCACAACCGCGAGATCCCCTTAATGATTGTCATGTTGCAACTGAAAACAAAGTGCGCGACTTTTACGTCCCCGAAGAACTGATCGAGTGGGTAACAGAAAAGAAGGAGCTACGCCAGCTTCCCTGCTCTTCCTTCAATAAAAGCTACGGTTTGTATCTGATGAGTTCCAATACGGCGACGTCGAGCTCAGGAGGCGCTAGATCTGCTGATTCAGCTGCTCCCAGGAGGTCCAAGCGGCCTAAATATTCAAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACGCCAAATTGGGTAATCTCAGCATTCATGCTCGTTGCAATCGTTTTGATAAACATCGGAGTTGCTACCCTATTTGCTTCCCGAGATGTTGTTGAAATTGTTGATCGATATGAAGCTGATTGCATACCAGCGTCCTCTAGAAGTGTTAAGGTCATATACATCCAGACCTCAGGAAATAAAGGGAAAAATTTGGTAAGTGGACCTGAACTATGGACCACTACGAATTTTGGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

297

Amino Acids

33.03

Weight (kDa)

9.81

Isoelectric Point (pI)

64.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018928)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g18250
rosa_chinensis	RchiOBHm_Chr6g0266591
rosa_multiflora	Rmu_sc0007223.1_g000001
rosa_roxburghii	Rroxscaffold_7G00188280
rosa_samantha	Rh1BG247900 Rh1DG276300 Rh3AG031900 Rh3BG309700 Rh5DG429400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AatII	GACGTC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	289
Acc65I	GGTACC	2 cut(s)	182, 301
AccB1I	GGYRCC	2 cut(s)	182, 301
AccII	CGCG	3 cut(s)	160, 376, 423
AciI	CCGC	2 cut(s)	374, 601
AclWI	GGATC	2 cut(s)	31, 374
AcsI	RAATTY	2 cut(s)	844, 880
AcyI	GRCGYC	2 cut(s)	210, 545
AfaI	GTAC	3 cut(s)	184, 261, 303
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	502, 615, 752
AjnI	CCWGG	1 cut(s)	587
AluBI	AGCT	6 cut(s)	475, 484, 510, 552, 581, 773
AluI	AGCT	6 cut(s)	475, 484, 510, 552, 581, 773
Alw21I	GWGCWC	1 cut(s)	554
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	31, 374
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	2 cut(s)	241, 581
ApoI	RAATTY	2 cut(s)	844, 880
Asp718I	GGTACC	2 cut(s)	182, 301
AspLEI	GCGC	3 cut(s)	160, 423, 563
AspS9I	GGNCC	4 cut(s)	594, 857, 870, 887
AsuHPI	GGTGA	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	4 cut(s)	594, 857, 870, 887
AxyI	CCTNAGG	1 cut(s)	826
BanI	GGYRCC	2 cut(s)	182, 301
BanII	GRGCYC	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	228, 568
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	2 cut(s)	564, 795
BfoI	RGCGCY	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	289
BglII	AGATCT	1 cut(s)	566
BisI	GCNGC	3 cut(s)	242, 582, 602
BlsI	GCNGC	3 cut(s)	243, 583, 603
Bme1390I	CCNGG	1 cut(s)	589
Bme18I	GGWCC	4 cut(s)	594, 857, 870, 887
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	4 cut(s)	594, 857, 870, 887
BmiI	GGNNCC	2 cut(s)	184, 303
BmrFI	CCNGG	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	553
Bsa29I	ATCGAT	1 cut(s)	763
BsaBI	GATNNNNATC	2 cut(s)	35, 710
BsaHI	GRCGYC	2 cut(s)	210, 545
BsaJI	CCNNGG	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	244
Bse21I	CCTNAGG	1 cut(s)	826
Bse3DI	GCAATG	1 cut(s)	156
Bse8I	GATNNNNATC	2 cut(s)	35, 710
BseBI	CCWGG	1 cut(s)	589
BseCI	ATCGAT	1 cut(s)	763
BseDI	CCNNGG	1 cut(s)	587
BseGI	GGATG	2 cut(s)	10, 816
BseJI	GATNNNNATC	2 cut(s)	35, 710
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	4 cut(s)	567, 638, 690, 840
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	228, 568
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	3 cut(s)	160, 376, 423
BshFI	GGCC	1 cut(s)	604
BshNI	GGYRCC	2 cut(s)	182, 301
BshVI	ATCGAT	1 cut(s)	763
BsiHKAI	GWGCWC	1 cut(s)	554
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	2 cut(s)	299, 419
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	299, 419
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
BspACI	CCGC	2 cut(s)	374, 601
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	4 cut(s)	566, 637, 689, 839
BspDI	ATCGAT	1 cut(s)	763
BspFNI	CGCG	3 cut(s)	160, 376, 423
BspLI	GGNNCC	2 cut(s)	184, 303
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	2 cut(s)	31, 374
BspQI	GCTCTTC	1 cut(s)	499
BspT107I	GGYRCC	2 cut(s)	182, 301
BsrDI	GCAATG	1 cut(s)	156
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	587
BssMI	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
BssNI	GRCGYC	2 cut(s)	210, 545
Bst2UI	CCWGG	1 cut(s)	589
Bst4CI	ACNGT	2 cut(s)	224, 515
Bst6I	CTCTTC	2 cut(s)	98, 499
BstACI	GRCGYC	2 cut(s)	210, 545
BstC8I	GCNNGC	4 cut(s)	344, 482, 643, 647
BstDEI	CTNAG	4 cut(s)	553, 624, 676, 826
BstF5I	GGATG	2 cut(s)	10, 816
BstFNI	CGCG	3 cut(s)	160, 376, 423
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	3 cut(s)	160, 423, 563
BstKTI	GATC	6 cut(s)	33, 39, 382, 450, 569, 763
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 481, 558, 569, 578
BstNI	CCWGG	1 cut(s)	589
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	587
BstUI	CGCG	3 cut(s)	160, 376, 423
BstV1I	GCAGC	2 cut(s)	228, 568
BstX2I	RGATCY	2 cut(s)	379, 566
BstYI	RGATCY	2 cut(s)	379, 566
Bsu15I	ATCGAT	1 cut(s)	763
Bsu36I	CCTNAGG	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	604
BsuTUI	ATCGAT	1 cut(s)	763
BtsCI	GGATG	2 cut(s)	10, 816
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	344, 482, 643, 647
CfoI	GCGC	3 cut(s)	160, 423, 563
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	4 cut(s)	594, 857, 870, 887
ClaI	ATCGAT	1 cut(s)	763
CseI	GACGC	3 cut(s)	149, 199, 777
Csp6I	GTAC	3 cut(s)	183, 260, 302
CviAII	CATG	5 cut(s)	132, 398, 642, 685, 891
CviQI	GTAC	3 cut(s)	183, 260, 302
DdeI	CTNAG	4 cut(s)	553, 624, 676, 826
DpnI	GATC	6 cut(s)	32, 38, 381, 449, 568, 762
DpnII	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	98, 499
EarI	CTCTTC	2 cut(s)	98, 499
Ecl136II	GAGCTC	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	554
Eco47I	GGWCC	4 cut(s)	594, 857, 870, 887
Eco53kI	GAGCTC	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	826
Eco88I	CYCGRG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	554
FaeI	CATG	5 cut(s)	135, 401, 645, 688, 894
FaqI	GGGAC	2 cut(s)	299, 419
FatI	CATG	5 cut(s)	131, 397, 641, 684, 890
Fnu4HI	GCNGC	3 cut(s)	242, 582, 602
FokI	GGATG	2 cut(s)	17, 803
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	242, 582, 602
FspBI	CTAG	2 cut(s)	564, 795
GlaI	GCGC	3 cut(s)	159, 422, 562
GluI	GCNGC	3 cut(s)	242, 582, 602
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	3 cut(s)	149, 199, 777
HhaI	GCGC	3 cut(s)	160, 423, 563
Hin1I	GRCGYC	2 cut(s)	210, 545
Hin1II	CATG	5 cut(s)	135, 401, 645, 688, 894
Hin6I	GCGC	3 cut(s)	158, 421, 561
HinP1I	GCGC	3 cut(s)	158, 421, 561
HinfI	GANTC	2 cut(s)	365, 575
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	857
Hpy188I	TCNGA	3 cut(s)	52, 525, 716
Hpy188III	TCNNGA	8 cut(s)	34, 70, 555, 615, 738, 795, 820, 828
Hpy8I	GTNNAC	1 cut(s)	857
Hpy99I	CGWCG	3 cut(s)	193, 547, 550
HpyAV	CCTTC	2 cut(s)	463, 508
HpyCH4III	ACNGT	2 cut(s)	224, 515
HpyCH4IV	ACGT	2 cut(s)	432, 545
HpyCH4V	TGCA	6 cut(s)	10, 131, 404, 645, 695, 780
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 481, 558, 569, 578
HpyF3I	CTNAG	4 cut(s)	553, 624, 676, 826
HpySE526I	ACGT	2 cut(s)	432, 545
Hsp92I	GRCGYC	2 cut(s)	210, 545
Hsp92II	CATG	5 cut(s)	135, 401, 645, 688, 894
HspAI	GCGC	3 cut(s)	158, 421, 561
KpnI	GGTACC	2 cut(s)	186, 305
Kzo9I	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
LguI	GCTCTTC	1 cut(s)	499
LmnI	GCTCC	2 cut(s)	472, 589
Lsp1109I	GCAGC	2 cut(s)	228, 568
MaeI	CTAG	2 cut(s)	564, 795
MaeII	ACGT	2 cut(s)	432, 545
MaeIII	GTNAC	3 cut(s)	161, 366, 457
MalI	GATC	6 cut(s)	32, 38, 381, 449, 568, 762
MboI	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
MboII	GAAGA	4 cut(s)	53, 115, 452, 486
MflI	RGATCY	2 cut(s)	379, 566
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	6 cut(s)	126, 651, 664, 753, 844, 880
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	302
MseI	TTAA	2 cut(s)	387, 804
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	589
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	589
MvnI	CGCG	3 cut(s)	160, 376, 423
MwoI	GCNNNNNNNGC	5 cut(s)	155, 481, 558, 569, 578
NdeII	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
NlaIII	CATG	5 cut(s)	135, 401, 645, 688, 894
NlaIV	GGNNCC	2 cut(s)	184, 303
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	161, 366
NspI	RCATGY	1 cut(s)	645
PaeI	GCATGC	1 cut(s)	645
PciSI	GCTCTTC	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	2 cut(s)	545, 696
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	575
PkrI	GCNGC	3 cut(s)	243, 583, 603
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
Psp124BI	GAGCTC	1 cut(s)	554
Psp6I	CCWGG	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	587
PspN4I	GGNNCC	2 cut(s)	184, 303
PspPI	GGNCC	4 cut(s)	594, 857, 870, 887
PsuI	RGATCY	2 cut(s)	379, 566
PvuII	CAGCTG	1 cut(s)	581
RsaI	GTAC	3 cut(s)	184, 261, 303
RsaNI	GTAC	3 cut(s)	183, 260, 302
RseI	CAYNNNNRTG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	554
SapI	GCTCTTC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	387, 804
SatI	GCNGC	3 cut(s)	242, 582, 602
Sau3AI	GATC	6 cut(s)	30, 36, 379, 447, 566, 760
Sau96I	GGNCC	4 cut(s)	594, 857, 870, 887
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	1 cut(s)	554
SinI	GGWCC	4 cut(s)	594, 857, 870, 887
SmiMI	CAYNNNNRTG	1 cut(s)	19
SphI	GCATGC	1 cut(s)	645
Sse9I	AATT	6 cut(s)	126, 651, 664, 753, 844, 880
SsiI	CCGC	2 cut(s)	374, 601
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	2 cut(s)	564, 795
SstI	GAGCTC	1 cut(s)	554
StyD4I	CCNGG	1 cut(s)	587
TaaI	ACNGT	2 cut(s)	224, 515
TaiI	ACGT	2 cut(s)	435, 548
TaqI	TCGA	5 cut(s)	29, 251, 450, 548, 763
TasI	AATT	6 cut(s)	126, 651, 664, 753, 844, 880
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	2 cut(s)	387, 804
Tru9I	TTAA	2 cut(s)	387, 804
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	161, 366
TseI	GCWGC	2 cut(s)	241, 581
Tsp45I	GTSAC	2 cut(s)	161, 366
TspDTI	ATGAA	2 cut(s)	673, 783
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	4 cut(s)	594, 857, 870, 887
XapI	RAATTY	2 cut(s)	844, 880
XbaI	TCTAGA	1 cut(s)	794
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	2 cut(s)	564, 795
ZraI	GACGTC	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.