Rroxscaffold_7G00188280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018928
Physical Location & Seq
Forward (+)
27843759 .. 27846000
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188280.1

Sequence Viewer

Length: 477 bp
ATGAGTTCTAATACGGCGCGGTATCCGCTGATTCAACTGCTCCTAGGAGGTCTAAGTGGCCCAAATGTAAATTTTTCTTCTCCAAGAATTTGGATTTTTGCTTCTTTTGGAGATTTAGGTTCATATGGGAAATTCCCAGATGGAGATTTTGTGTGTTTCTCGCCTTCGTGTTTCGGATTCAAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCATGCCAAAATGGGTAGGCTTTCTAGCAATGAATCATATGTCCGCTCGTTTTGTTGTAGTGCAACAAATGTCACAAGGTTCTGTACCATCACAAGAGCCCGCACGGCCATCCAAGTGTCATATCATGGGCGGGGTCCGATACCCACCATGATGGTGCTCACAATGGGCGACACCTTGGGTGACAAAGGCCTCGGGCCTACACAATTGAACTCACCAAAGTATACGCCAGAACCTGCTATAACTACAAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.98

Weight (kDa)

9.4

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018928)

Species Orthologous Gene IDs
pyrus_communis pycom10g18250
rosa_chinensis RchiOBHm_Chr6g0266591
rosa_multiflora Rmu_sc0007223.1_g000001
rosa_roxburghii Rroxscaffold_7G00188280
rosa_samantha Rh1BG247900 Rh1DG276300 Rh3AG031900 Rh3BG309700 Rh5DG429400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 443
AccII CGCG 1 cut(s) 19
AciI CCGC 5 cut(s) 19, 26, 265, 322, 352
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 70, 87, 131
AfaI GTAC 1 cut(s) 307
AgsI TTSAA 3 cut(s) 35, 181, 430
Alw21I GWGCWC 1 cut(s) 381
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 4 cut(s) 58, 327, 409, 416
ApoI RAATTY 3 cut(s) 70, 87, 131
AspA2I CCTAGG 1 cut(s) 43
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 59, 356, 416
AsuHPI GGTGA 2 cut(s) 413, 426
AvaI CYCGRG 1 cut(s) 413
AvaII GGWCC 1 cut(s) 356
AvrII CCTAGG 1 cut(s) 43
BanII GRGCYC 1 cut(s) 322
Bbv12I GWGCWC 1 cut(s) 381
BccI CCATC 4 cut(s) 134, 317, 338, 367
BceAI ACGGC 2 cut(s) 30, 342
BciVI GTATCC 1 cut(s) 33
BfaI CTAG 2 cut(s) 44, 246
BfuAI ACCTGC 1 cut(s) 463
BfuI GTATCC 1 cut(s) 33
BglI GCCNNNNNGGC 1 cut(s) 326
BlnI CCTAGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 356
BmeT110I CYCGRG 1 cut(s) 413
BmgT120I GGNCC 3 cut(s) 59, 356, 416
BmiI GGNNCC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 43, 396, 412
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bse3DI GCAATG 1 cut(s) 256
BseDI CCNNGG 3 cut(s) 43, 396, 412
BseGI GGATG 1 cut(s) 330
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 60, 329, 411, 418
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 413
BsnI GGCC 4 cut(s) 60, 329, 411, 418
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 2 cut(s) 322, 381
BspACI CCGC 5 cut(s) 19, 26, 265, 322, 352
BspANI GGCC 4 cut(s) 60, 329, 411, 418
BspCNI CTCAG 1 cut(s) 203
BspFNI CGCG 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 357
BspMI ACCTGC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 267
BsrDI GCAATG 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 43, 396, 412
BssNAI GTATAC 1 cut(s) 444
BssT1I CCWWGG 2 cut(s) 43, 396
Bst1107I GTATAC 1 cut(s) 444
BstC8I GCNNGC 3 cut(s) 209, 213, 322
BstDEI CTNAG 2 cut(s) 53, 190
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 25, 326
BstNSI RCATGY 1 cut(s) 211
BstUI CGCG 1 cut(s) 19
BstXI CCANNNNNNTGG 2 cut(s) 90, 373
BstZ17I GTATAC 1 cut(s) 444
BsuI GTATCC 1 cut(s) 33
BsuRI GGCC 4 cut(s) 60, 329, 411, 418
BtsCI GGATG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 463
Cac8I GCNNGC 3 cut(s) 209, 213, 322
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 59, 356, 416
Csp6I GTAC 1 cut(s) 306
CviAII CATG 4 cut(s) 208, 224, 347, 370
CviJI RGCY 7 cut(s) 60, 215, 241, 320, 329, 411, 418
CviKI_1 RGCY 7 cut(s) 60, 215, 241, 320, 329, 411, 418
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 2 cut(s) 53, 190
EaeI YGGCCR 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 43, 396
Eco147I AGGCCT 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 413
EcoT14I CCWWGG 2 cut(s) 43, 396
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 2 cut(s) 43, 396
FaeI CATG 4 cut(s) 211, 227, 350, 373
FatI CATG 4 cut(s) 207, 223, 346, 369
FauI CCCGC 2 cut(s) 329, 345
FauNDI CATATG 2 cut(s) 124, 259
FblI GTMKAC 1 cut(s) 443
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 322
FspBI CTAG 2 cut(s) 44, 246
GlaI GCGC 1 cut(s) 18
HaeIII GGCC 4 cut(s) 60, 329, 411, 418
HhaI GCGC 1 cut(s) 19
Hin1II CATG 4 cut(s) 211, 227, 350, 373
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 3 cut(s) 31, 177, 254
HphI GGTGA 2 cut(s) 413, 426
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 2 cut(s) 176, 360
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 211, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 326
HpyF3I CTNAG 2 cut(s) 53, 190
Hsp92II CATG 4 cut(s) 211, 227, 350, 373
HspAI GCGC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 150, 180, 217, 462, 468
MaeI CTAG 2 cut(s) 44, 246
MaeIII GTNAC 2 cut(s) 292, 401
MbiI CCGCTC 1 cut(s) 267
MboII GAAGA 1 cut(s) 69
MfeI CAATTG 1 cut(s) 425
MhlI GDGCHC 2 cut(s) 322, 381
MluCI AATT 5 cut(s) 70, 87, 131, 217, 425
MnlI CCTC 2 cut(s) 41, 422
MslI CAYNNNNRTG 3 cut(s) 335, 371, 374
MspA1I CMGCKG 1 cut(s) 28
MunI CAATTG 1 cut(s) 425
MvnI CGCG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 25, 326
NdeI CATATG 2 cut(s) 124, 259
NlaIII CATG 4 cut(s) 211, 227, 350, 373
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 292, 401
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 411
PfeI GAWTC 3 cut(s) 31, 177, 254
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 3 cut(s) 59, 356, 416
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 3 cut(s) 335, 371, 374
Sau96I GGNCC 3 cut(s) 59, 356, 416
SduI GDGCHC 2 cut(s) 322, 381
SetI ASST 5 cut(s) 52, 121, 302, 398, 457
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 3 cut(s) 335, 371, 374
SphI GCATGC 1 cut(s) 211
Sse9I AATT 5 cut(s) 70, 87, 131, 217, 425
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 5 cut(s) 19, 26, 265, 322, 352
SspMI CTAG 2 cut(s) 44, 246
StuI AGGCCT 1 cut(s) 411
StyI CCWWGG 2 cut(s) 43, 396
TasI AATT 5 cut(s) 70, 87, 131, 217, 425
TfiI GAWTC 3 cut(s) 31, 177, 254
TseFI GTSAC 2 cut(s) 292, 401
Tsp45I GTSAC 2 cut(s) 292, 401
TspDTI ATGAA 2 cut(s) 111, 267
VpaK11BI GGWCC 1 cut(s) 356
XapI RAATTY 3 cut(s) 70, 87, 131
XceI RCATGY 1 cut(s) 211
XmaJI CCTAGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 443
XspI CTAG 2 cut(s) 44, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.