Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012854

Physical Location & Seq

Genomic Coordinates Forward (+)

22041902 .. 22042786

Gene Structure 885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g18770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCGAATTCCGAAATGATGTCTGTCTTCCTCTGCTCTCTCTTTCTGTTCCTCACTTGTTTTTCTTCTGTTTCATCACTTAATCCGTCTCTCAGGAGGCAAGCATCAATTCTTGTTTCTCTCAAACAAAATTTCGAAGACTCGAAAAATCCTTCTTTAAGTACTTGGAATGTGTCAAACTACATGTTCCTCTGCTCTTGGGCTGGCATCAAGTGTGACAGCCTCAACAGATCAGTAGTCTCACTTGACATATCCAACTACAATCTCTCGGGCACCCTTTCGCCAGTGATCACTGAACTCCGCACCCTTGTCAATGTTTCGGTGTCAGGAAATGGATTTTCGGGTATTTTTCCTCCTGGTATCCACAAACTAGCCGAGCTACAAAACCTCAACATCTCCAACAACAGGTTCGGTGGAAGCTTGGATTTGGAGTTTTCTAAGTTGGAGGAGCTTGTAATGCTAGATGCTTACAACAACGATTTCAATGGATCACTTCCATTAGGTGTCACTCAGCTTCCGAGGCTGAAGCGGTTGAACTTTGGCGGGAACTACTTCAGTGGGAGCATTCCTCCTAGCTATGGAAACATGGTGCAGCTTGATTATCTGTCAATTGCGGGAAATGACCTGAGCGGTTACATACCGAGCGAGCTCGGAAACCTCACTAACCTACAGCAGCTTTTGTTGGGATATTACAACGAATTTGAAGGCGGAATCCCACCAGAAATTGGCAAGCTCGATCAATCTGTTTCATTTAGACCTCGCAAACTGCGGTTTGGAGGGGCCAATCCCTCCGGAGCTAGGCAATCTGAAAAAGCTAGACACTTTGTTCTTGCAAACAAACCAGCTCAGCGGTTCGGTTCCTGCTCAGCTGGGAAACTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010073 GO:0010075 GO:0016020 GO:0022414 GO:0032501 GO:0032502 GO:0040008 GO:0044464 GO:0048367 GO:0048437 GO:0048507 GO:0048509 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0061458 GO:0065007 GO:0071944 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

295

Amino Acids

32.18

Weight (kDa)

8.23

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	34 - 73	7.4e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	121 - 228	6e-09	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20270
fragaria_vesca	FvH4_3g13410
malus_domestica	MD05G1241900.v1.1 MD10G1223800.v1.1
prunus_persica	Prupe.4G121500_v2.0.a1
pyrus_communis	pycom05g21850 pycom10g18770 pycom10g18780
rosa_chinensis	RchiOBHm_Chr5g0022141
rosa_laevigata	RLG00000032647
rosa_multiflora	Rmu_sc0000491.1_g000007
rosa_roxburghii	Rroxscaffold_1G00056790
rosa_rugosa	Rorug05G0071500.1
rosa_samantha	Rh5AG159600 Rh5BG159100 Rh5CG173300 Rh5DG159100
rosa_wichuraiana	Rw5G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	725
AccBSI	CCGCTC	1 cut(s)	630
AccIII	TCCGGA	1 cut(s)	791
AciI	CCGC	8 cut(s)	301, 529, 543, 614, 630, 708, 769, 850
AclWI	GGATC	1 cut(s)	496
AcsI	RAATTY	3 cut(s)	7, 130, 698
AcuI	CTGAAG	2 cut(s)	538, 545
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	4 cut(s)	405, 578, 725, 798
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	484, 535, 704
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	2 cut(s)	93, 244
AlwI	GGATC	1 cut(s)	496
Ama87I	CYCGRG	1 cut(s)	268
Aor13HI	TCCGGA	1 cut(s)	791
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	2 cut(s)	592, 673
ApoI	RAATTY	3 cut(s)	7, 130, 698
Asp700I	GAANNNNTTC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	780
AsuII	TTCGAA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	268
BaeGI	GKGCMC	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	651
BbsI	GAAGAC	2 cut(s)	19, 144
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	2 cut(s)	604, 685
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	371
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	93, 244
BfaI	CTAG	5 cut(s)	371, 461, 573, 798, 816
BfmI	CTRYAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	593, 674
BlpI	GCTNAGC	2 cut(s)	846, 865
BlsI	GCNGC	2 cut(s)	594, 675
BmcAI	AGTACT	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	780
BmiI	GGNNCC	3 cut(s)	274, 781, 859
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	3 cut(s)	113, 216, 454
BpiI	GAAGAC	2 cut(s)	19, 144
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
Bpu10I	CCTNAGC	1 cut(s)	626
Bpu1102I	GCTNAGC	2 cut(s)	846, 865
Bpu14I	TTCGAA	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	791
Bsc4I	CCNNNNNNNGG	4 cut(s)	405, 578, 725, 798
Bse1I	ACTGG	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	791
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	518
BseLI	CCNNNNNNNGG	4 cut(s)	405, 578, 725, 798
BseMII	CTCAG	5 cut(s)	106, 524, 617, 860, 879
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	604, 685
BseYI	CCCAGC	1 cut(s)	869
BsgI	GTGCAG	1 cut(s)	611
BshFI	GGCC	1 cut(s)	782
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	651
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	792
BslI	CCNNNNNNNGG	4 cut(s)	405, 578, 725, 798
BsmAI	GTCTC	2 cut(s)	93, 244
BsmBI	CGTCTC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	275, 651
Bsp13I	TCCGGA	1 cut(s)	791
Bsp143I	GATC	4 cut(s)	230, 288, 488, 736
Bsp1720I	GCTNAGC	2 cut(s)	846, 865
BspACI	CCGC	8 cut(s)	301, 529, 543, 614, 630, 708, 769, 850
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	5 cut(s)	105, 523, 618, 859, 878
BspEI	TCCGGA	1 cut(s)	791
BspLI	GGNNCC	3 cut(s)	274, 781, 859
BspPI	GGATC	1 cut(s)	496
BspT104I	TTCGAA	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	272
BsrBI	CCGCTC	1 cut(s)	630
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	4 cut(s)	230, 288, 488, 736
Bst2UI	CCWGG	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	102, 205, 647, 731
BstDEI	CTNAG	6 cut(s)	92, 438, 510, 626, 846, 865
BstKTI	GATC	4 cut(s)	233, 291, 491, 739
BstMAI	GTCTC	2 cut(s)	93, 244
BstMBI	GATC	4 cut(s)	230, 288, 488, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	457, 520
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	668
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	604, 685
BstV2I	GAAGAC	2 cut(s)	19, 144
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	291, 291, 562
Cac8I	GCNNGC	4 cut(s)	102, 205, 647, 731
Cfr13I	GGNCC	1 cut(s)	780
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	184, 586
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	6 cut(s)	92, 438, 510, 626, 846, 865
DpnI	GATC	4 cut(s)	232, 290, 490, 738
DpnII	GATC	4 cut(s)	230, 288, 488, 736
EciI	GGCGGA	1 cut(s)	723
Ecl136II	GAGCTC	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	651
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	2 cut(s)	538, 545
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	651
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	2 cut(s)	187, 589
FaiI	YATR	5 cut(s)	185, 251, 579, 587, 638
FatI	CATG	2 cut(s)	183, 585
FauI	CCCGC	2 cut(s)	536, 607
FbaI	TGATCA	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	593, 674
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	2 cut(s)	593, 674
FspBI	CTAG	5 cut(s)	371, 461, 573, 798, 816
GluI	GCNGC	2 cut(s)	593, 674
GsaI	CCCAGC	1 cut(s)	873
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	1 cut(s)	792
Hin1II	CATG	2 cut(s)	187, 589
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	2 cut(s)	140, 711
HpaII	CCGG	1 cut(s)	792
Hpy188I	TCNGA	4 cut(s)	13, 519, 653, 808
Hpy188III	TCNNGA	3 cut(s)	94, 327, 792
HpyAV	CCTTC	2 cut(s)	162, 698
HpyCH4V	TGCA	2 cut(s)	592, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	457, 520
HpyF3I	CTNAG	6 cut(s)	92, 438, 510, 626, 846, 865
Hsp92II	CATG	2 cut(s)	187, 589
Kpn2I	TCCGGA	1 cut(s)	791
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	230, 288, 488, 736
LmnI	GCTCC	3 cut(s)	448, 561, 794
Lsp1109I	GCAGC	2 cut(s)	604, 685
LweI	GCATC	3 cut(s)	113, 216, 454
MaeI	CTAG	5 cut(s)	371, 461, 573, 798, 816
MaeIII	GTNAC	3 cut(s)	215, 505, 632
MalI	GATC	4 cut(s)	232, 290, 490, 738
MbiI	CCGCTC	1 cut(s)	630
MboI	GATC	4 cut(s)	230, 288, 488, 736
MboII	GAAGA	3 cut(s)	19, 57, 149
MfeI	CAATTG	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	275, 651
MluCI	AATT	6 cut(s)	7, 108, 130, 609, 698, 723
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	3 cut(s)	279, 423, 423
MroI	TCCGGA	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	2 cut(s)	81, 158
MspA1I	CMGCKG	2 cut(s)	850, 869
MspI	CCGG	1 cut(s)	792
MspR9I	CCNGG	1 cut(s)	357
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	457, 520
NdeII	GATC	4 cut(s)	230, 288, 488, 736
NlaIII	CATG	2 cut(s)	187, 589
NlaIV	GGNNCC	3 cut(s)	274, 781, 859
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	2 cut(s)	215, 505
NspI	RCATGY	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	135
PciI	ACATGT	1 cut(s)	183
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	711
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	2 cut(s)	594, 675
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PscI	ACATGT	1 cut(s)	183
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	869
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	274, 781, 859
PspPI	GGNCC	1 cut(s)	780
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	81, 158
SatI	GCNGC	2 cut(s)	593, 674
Sau3AI	GATC	4 cut(s)	230, 288, 488, 736
Sau96I	GGNCC	1 cut(s)	780
ScaI	AGTACT	1 cut(s)	163
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	2 cut(s)	275, 651
SfaNI	GCATC	3 cut(s)	113, 216, 454
SfcI	CTRYAG	1 cut(s)	668
SfuI	TTCGAA	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
Sse9I	AATT	6 cut(s)	7, 108, 130, 609, 698, 723
SsiI	CCGC	8 cut(s)	301, 529, 543, 614, 630, 708, 769, 850
SspMI	CTAG	5 cut(s)	371, 461, 573, 798, 816
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	355
TaqI	TCGA	3 cut(s)	135, 143, 735
TasI	AATT	6 cut(s)	7, 108, 130, 609, 698, 723
TatI	WGTACW	1 cut(s)	161
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	2 cut(s)	81, 158
Tru9I	TTAA	2 cut(s)	81, 158
TscAI	CASTG	3 cut(s)	291, 298, 562
TseFI	GTSAC	2 cut(s)	215, 505
TseI	GCWGC	2 cut(s)	592, 673
Tsp45I	GTSAC	2 cut(s)	215, 505
TspDTI	ATGAA	2 cut(s)	63, 738
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	3 cut(s)	291, 298, 562
Van91I	CCANNNNNTGG	1 cut(s)	725
XapI	RAATTY	3 cut(s)	7, 130, 698
XceI	RCATGY	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	5 cut(s)	371, 461, 573, 798, 816
ZrmI	AGTACT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.