Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004060

Physical Location & Seq

Genomic Coordinates Forward (+)

23764288 .. 23765408

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGTTGTGTTGCATCTAGGATTGATAAGGAAGAGAGGGTGAAGGTTTGCAAGGAGAGAAAGAAGCTAATGAAACAGTTGGTAAGGTTTAGAGGTGAATTTGCTGAGGCACAATTGGCTTATTTAAGATCATTGAGGAACACTGATCGATCAACACTTAGACAATTTACCGAGTCGGAGACGTTGGAGCTTGATAATACTGCTCCATACGGCTTGGAGTCGCCAGCTTCACCACCTCCCCTTTTGCCTCCTCCTCCGCCGCCACCACCTTTGAGCCCTGATTCGAGAAAGTTGGATGATAGTCACAGAGAAGAAGTTGGTCAAGAGGAGTACATAGAACGTACTGAGGATGATAGCAGCACTCCACCACCTCCTCCAAACCTGAGCTCTTCCTCACCAGAGCATCATAAACATGATGAAACGGTGGAATTGCTTGAGGAAAAATGGGAAGAGAGTAAGATGGAATTTGAGGAAGACGAACAGGAAGAGGAAACGGTTGCTAATGTTGTGAATTCGCCGCCTAAGAATCTGCAGCTCGCAGAAGCCATCATGGAGGATGTATCAGTGAAGAAGCGGCATACTAAGGACACTGCAGATGTGCCCATGGTACTATGGAGAAGCAAGAAGACCTTGGAGGGTATAGCTAAGGAGTTAGATGATTATTTTCTGAAATCATCAGACGGTTTAAAGGAAATTGCTGTTCTTATGGATATCAAAGGAGGGGACACTTTTCTGCCACTCATTACTAGCGAAAGCAAAACATGGGGAGAGGTCCAATTCCACAAAGGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

265

Amino Acids

29.99

Weight (kDa)

4.87

Isoelectric Point (pI)

69.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34670 AT2G34670
fragaria_vesca	FvH4_3g09830
malus_domestica	MD05G1275400.v1.1 MD10G1254900.v1.1
prunus_persica	Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1
pyrus_communis	pycom05g25660 pycom10g21030 pycom10g21040
rosa_chinensis	RchiOBHm_Chr5g0015541
rosa_laevigata	RLG00000032207
rosa_multiflora	Rmu_sc0003064.1_g000007
rosa_roxburghii	Rroxscaffold_1G00060970
rosa_rugosa	Rorug05G0028100 Rorug05G0028200 Rorug05G0028300 Rorug05G0028300 Rorug05G0028300 Rorug05G0028300
rosa_samantha	Rh5AG121600 Rh5BG120400 Rh5CG130700 Rh5DG119300
rosa_wichuraiana	Rw5G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	257, 260, 518, 574
AcsI	RAATTY	3 cut(s)	98, 464, 511
AfaI	GTAC	3 cut(s)	332, 343, 609
AluBI	AGCT	6 cut(s)	67, 190, 227, 387, 535, 644
AluI	AGCT	6 cut(s)	67, 190, 227, 387, 535, 644
Alw21I	GWGCWC	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	357, 532
ApoI	RAATTY	3 cut(s)	98, 464, 511
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	4 cut(s)	52, 107, 222, 387
AvaII	GGWCC	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	603
BanII	GRGCYC	2 cut(s)	278, 389
BbsI	GAAGAC	2 cut(s)	480, 632
Bbv12I	GWGCWC	1 cut(s)	389
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	369, 544
BccI	CCATC	2 cut(s)	454, 554
BceAI	ACGGC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	18, 747
BfmI	CTRYAG	2 cut(s)	530, 591
BisI	GCNGC	5 cut(s)	260, 358, 518, 533, 575
BlsI	GCNGC	5 cut(s)	261, 359, 519, 534, 576
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	772
BmsI	GCATC	2 cut(s)	23, 412
BpiI	GAAGAC	2 cut(s)	480, 632
Bpu10I	CCTNAGC	3 cut(s)	105, 383, 645
BpuEI	CTTGAG	1 cut(s)	455
Bsa29I	ATCGAT	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	603, 630
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	603, 630
BseGI	GGATG	3 cut(s)	301, 355, 562
BseMII	CTCAG	3 cut(s)	96, 336, 374
BseRI	GAGGAG	4 cut(s)	240, 243, 341, 363
BseSI	GKGCMC	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	369, 544
BshVI	ATCGAT	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	737
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	737
Bsp1286I	GDGCHC	3 cut(s)	278, 389, 603
Bsp143I	GATC	3 cut(s)	128, 145, 149
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	4 cut(s)	257, 260, 518, 574
BspCNI	CTCAG	3 cut(s)	97, 337, 375
BspDI	ATCGAT	1 cut(s)	148
BspMAI	CTGCAG	2 cut(s)	534, 595
BspQI	GCTCTTC	1 cut(s)	394
BssECI	CCNNGG	2 cut(s)	603, 630
BssMI	GATC	3 cut(s)	128, 145, 149
BssT1I	CCWWGG	2 cut(s)	603, 630
Bst4CI	ACNGT	4 cut(s)	78, 424, 496, 683
Bst6I	CTCTTC	4 cut(s)	27, 394, 444, 480
BstC8I	GCNNGC	2 cut(s)	225, 537
BstDEI	CTNAG	7 cut(s)	105, 158, 345, 383, 522, 582, 645
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	3 cut(s)	301, 355, 562
BstKTI	GATC	3 cut(s)	131, 148, 152
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	3 cut(s)	128, 145, 149
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSFI	CTRYAG	2 cut(s)	530, 591
BstSLI	GKGCMC	1 cut(s)	603
BstV1I	GCAGC	2 cut(s)	369, 544
BstV2I	GAAGAC	2 cut(s)	480, 632
Bsu15I	ATCGAT	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	301, 355, 562
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	3 cut(s)	141, 570, 588
Cac8I	GCNNGC	2 cut(s)	225, 537
Cfr13I	GGNCC	1 cut(s)	772
ClaI	ATCGAT	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	331, 342, 608
CspCI	CAANNNNNGTGG	2 cut(s)	252, 287
CviAII	CATG	4 cut(s)	413, 550, 604, 762
CviQI	GTAC	3 cut(s)	331, 342, 608
DdeI	CTNAG	7 cut(s)	105, 158, 345, 383, 522, 582, 645
DpnI	GATC	3 cut(s)	130, 147, 151
DpnII	GATC	3 cut(s)	128, 145, 149
DraI	TTTAAA	1 cut(s)	687
Eam1104I	CTCTTC	4 cut(s)	27, 394, 444, 480
EarI	CTCTTC	4 cut(s)	27, 394, 444, 480
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	603, 630
Eco24I	GRGCYC	2 cut(s)	278, 389
Eco32I	GATATC	1 cut(s)	712
Eco47I	GGWCC	1 cut(s)	772
Eco53kI	GAGCTC	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	712
EcoT14I	CCWWGG	2 cut(s)	603, 630
EcoT38I	GRGCYC	2 cut(s)	278, 389
ErhI	CCWWGG	2 cut(s)	603, 630
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	416, 553, 607, 765
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	4 cut(s)	412, 549, 603, 761
Fnu4HI	GCNGC	5 cut(s)	260, 358, 518, 533, 575
FokI	GGATG	3 cut(s)	308, 362, 569
FriOI	GRGCYC	2 cut(s)	278, 389
Fsp4HI	GCNGC	5 cut(s)	260, 358, 518, 533, 575
FspBI	CTAG	2 cut(s)	18, 747
GluI	GCNGC	5 cut(s)	260, 358, 518, 533, 575
Hin1II	CATG	4 cut(s)	416, 553, 607, 765
HinfI	GANTC	4 cut(s)	173, 218, 281, 526
HphI	GGTGA	4 cut(s)	52, 107, 222, 387
Hpy188I	TCNGA	3 cut(s)	178, 669, 679
Hpy188III	TCNNGA	2 cut(s)	285, 323
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	4 cut(s)	78, 424, 496, 683
HpyCH4IV	ACGT	2 cut(s)	182, 340
HpyCH4V	TGCA	4 cut(s)	14, 51, 532, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	7 cut(s)	105, 158, 345, 383, 522, 582, 645
HpySE526I	ACGT	2 cut(s)	182, 340
Hsp92II	CATG	4 cut(s)	416, 553, 607, 765
Kzo9I	GATC	3 cut(s)	128, 145, 149
LguI	GCTCTTC	1 cut(s)	394
LmnI	GCTCC	2 cut(s)	187, 208
LpnPI	CCDG	5 cut(s)	237, 291, 395, 411, 467
Lsp1109I	GCAGC	2 cut(s)	369, 544
LweI	GCATC	2 cut(s)	23, 412
MaeI	CTAG	2 cut(s)	18, 747
MaeII	ACGT	2 cut(s)	182, 340
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	130, 147, 151
MboI	GATC	3 cut(s)	128, 145, 149
MboII	GAAGA	8 cut(s)	44, 323, 381, 461, 485, 497, 580, 637
MfeI	CAATTG	1 cut(s)	113
MhlI	GDGCHC	3 cut(s)	278, 389, 603
MluCI	AATT	8 cut(s)	98, 113, 164, 428, 464, 511, 693, 776
MlyI	GAGTC	2 cut(s)	182, 227
MmeI	TCCRAC	3 cut(s)	156, 165, 273
MseI	TTAA	2 cut(s)	125, 686
MslI	CAYNNNNRTG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	3 cut(s)	128, 145, 149
NlaIII	CATG	4 cut(s)	416, 553, 607, 765
NmuCI	GTSAC	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	281, 526
PkrI	GCNGC	5 cut(s)	261, 359, 519, 534, 576
PleI	GAGTC	2 cut(s)	181, 226
PpsI	GAGTC	2 cut(s)	181, 226
Psp124BI	GAGCTC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	772
PstI	CTGCAG	2 cut(s)	534, 595
RsaI	GTAC	3 cut(s)	332, 343, 609
RsaNI	GTAC	3 cut(s)	331, 342, 608
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	389
SapI	GCTCTTC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	125, 686
SatI	GCNGC	5 cut(s)	260, 358, 518, 533, 575
Sau3AI	GATC	3 cut(s)	128, 145, 149
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	2 cut(s)	182, 227
SduI	GDGCHC	3 cut(s)	278, 389, 603
SfaNI	GCATC	2 cut(s)	23, 412
SfcI	CTRYAG	2 cut(s)	530, 591
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	8 cut(s)	98, 113, 164, 428, 464, 511, 693, 776
SsiI	CCGC	4 cut(s)	257, 260, 518, 574
SspMI	CTAG	2 cut(s)	18, 747
SstI	GAGCTC	1 cut(s)	389
StyI	CCWWGG	2 cut(s)	603, 630
TaaI	ACNGT	4 cut(s)	78, 424, 496, 683
TaiI	ACGT	2 cut(s)	185, 343
TaqI	TCGA	2 cut(s)	148, 284
TasI	AATT	8 cut(s)	98, 113, 164, 428, 464, 511, 693, 776
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	3 cut(s)	262, 520, 577
TfiI	GAWTC	2 cut(s)	281, 526
Tru1I	TTAA	2 cut(s)	125, 686
Tru9I	TTAA	2 cut(s)	125, 686
TscAI	CASTG	3 cut(s)	148, 570, 595
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	2 cut(s)	357, 532
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	2 cut(s)	86, 432
TspRI	CASTG	3 cut(s)	148, 570, 595
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	3 cut(s)	98, 464, 511
XspI	CTAG	2 cut(s)	18, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.