Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004060

Physical Location & Seq

Genomic Coordinates Forward (+)

23774689 .. 23776551

Gene Structure 1863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGGTTGTGTTGCATCTAGGATTGATAAGGAAGAGAGGGTGAGGGTTTGCGAGGAGAGAAAGAAGCTAATGAAACAGTTGGTAAGGTTTAGAGGTGAATTTGCTGAGGCACAATTGGCTTACTTAAGATCATTGAGGAACAGTGATCGATCAACACTTAGACAATTTACCGAGTCGGAGATGTTGGAGCTTGATAATACTGCTGCAAACGGCTTGGAGTTGCCAGCTTCACCACCTCCCCCTTTGCCTCCTTCTCCGCCGCCACCACCTGTGAGCCCTGATTCGAGAAAGTTGGATGATAGTCACAGAATAGAAGTTGGTCAAGAGGAATACATAGAACATACTGAGGATGGTAGCAGCACTCCACCACCTCCTCCAAACCTGAGTCCTTTGTGGGAGCCTTGGGATCTTTTTCACTCTTCCTCACCAGAGCATCATAAACATGATGAAACGGTGGAATCACTTGAGATAAAAAGGGAAGAGACTAAGATGGAATTTAAGGAAGACGAACAGGAAGAGGAAACGGTTGCTAATGTTGTGAATTCGCCACCTAAGAACCTGCAGCTCGCAGAAGCCATCGTGGAGGATGTATCAGTGAAAAAGTGGCATACTAAGGACACTGCAGATGTGCCCATGGTACTATGGACAAGCAAGAAGACCTTGGACGGTATATCTAAGGTGTTAGATGATTATTTTCTGAAATCATCAGATGGTTTAAAGGAAATTGCTGTTCTTATGGACATCAAAGGAAGGGACATGTTTCTGCCACTCAGTACTAGCGAAAGCAAAAGGGAGAGGTCCAATTCCACAAAGGTCTTTAGTGCATTCCCATGGAGCTGGTCTTCTAGGTCACTTCAATTTCCTAAAGATGCGGATGAGTCTAGTGGTCCAAATGAACCATGCAGGCCAGGAGCTCATTGCATCACACTGAAAAAATTACATGATCACGAAAAGAAACTTTACAAAGAAGTTAAGGAGGAAGAGTATACATTTGAGCACGATAGGAAATCCAAATTACTGCAAAAACAAGAGGATCAAAACAATGACCGGACCAAGACTGAGAAAATTCGGTTTAGCGTTGAGAGTTTGGAGTCTGAAATCTTACGTCTTCAGGATTCAATCAGCACTACTTGTTCTTCAATAGTGAGGCTCATAGATAATGAGCTGTATCCTCAGTTGGTCACGCTAACTTCCGGTAGAATGTATAAAGTACTCTTGATCACTCAGGGAAAATTGTTCATCATGATGACGCAAGTTATCATTTTTTTCTGTTCTCATTCATCTCAGTCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF630 DUF632

Protein Analysis

432

Amino Acids

49.4

Weight (kDa)

5.42

Isoelectric Point (pI)

61.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF630	PF04783	1 - 60	6.2e-19	Protein of unknown function (DUF630)
DUF632	PF04782	224 - 401	4.2e-43	Protein of unknown function (DUF632)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004060)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34670 AT2G34670
fragaria_vesca	FvH4_3g09830
malus_domestica	MD05G1275400.v1.1 MD10G1254900.v1.1
prunus_persica	Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1 Prupe.4G088700_v2.0.a1
pyrus_communis	pycom05g25660 pycom10g21030 pycom10g21040
rosa_chinensis	RchiOBHm_Chr5g0015541
rosa_laevigata	RLG00000032207
rosa_multiflora	Rmu_sc0003064.1_g000007
rosa_roxburghii	Rroxscaffold_1G00060970
rosa_rugosa	Rorug05G0028100 Rorug05G0028200 Rorug05G0028300 Rorug05G0028300 Rorug05G0028300 Rorug05G0028300
rosa_samantha	Rh5AG121600 Rh5BG120400 Rh5CG130700 Rh5DG119300
rosa_wichuraiana	Rw5G010490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	986
AciI	CCGC	3 cut(s)	257, 260, 872
AclWI	GGATC	2 cut(s)	414, 1041
AcsI	RAATTY	4 cut(s)	98, 494, 541, 1065
AcuI	CTGAAG	1 cut(s)	1094
AfaI	GTAC	3 cut(s)	639, 775, 1212
AflII	CTTAAG	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	3 cut(s)	857, 1119, 1140
AjnI	CCWGG	1 cut(s)	907
AluBI	AGCT	7 cut(s)	67, 190, 227, 565, 837, 914, 1165
AluI	AGCT	7 cut(s)	67, 190, 227, 565, 837, 914, 1165
Alw21I	GWGCWC	2 cut(s)	916, 999
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	2 cut(s)	414, 1041
AoxI	GGCC	1 cut(s)	905
ApeKI	GCWGC	3 cut(s)	203, 357, 562
ApoI	RAATTY	4 cut(s)	98, 494, 541, 1065
AspS9I	GGNCC	3 cut(s)	798, 887, 1050
AsuHPI	GGTGA	5 cut(s)	52, 107, 222, 417, 1281
AvaII	GGWCC	3 cut(s)	798, 887, 1050
BaeGI	GKGCMC	1 cut(s)	633
BanII	GRGCYC	2 cut(s)	278, 916
BbsI	GAAGAC	4 cut(s)	510, 662, 834, 1100
Bbv12I	GWGCWC	2 cut(s)	916, 999
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	190, 369, 574
BccI	CCATC	4 cut(s)	344, 484, 584, 704
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	909
BciVI	GTATCC	1 cut(s)	1179
BclI	TGATCA	2 cut(s)	943, 1218
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	4 cut(s)	18, 777, 846, 882
BfmI	CTRYAG	2 cut(s)	560, 621
BfrI	CTTAAG	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	567
BfuI	GTATCC	1 cut(s)	1179
BisI	GCNGC	4 cut(s)	204, 260, 358, 563
BlsI	GCNGC	4 cut(s)	205, 261, 359, 564
BmcAI	AGTACT	2 cut(s)	775, 1212
Bme1390I	CCNGG	1 cut(s)	909
Bme18I	GGWCC	3 cut(s)	798, 887, 1050
BmgT120I	GGNCC	3 cut(s)	798, 887, 1050
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	909
BmsI	GCATC	4 cut(s)	23, 442, 859, 930
BpiI	GAAGAC	4 cut(s)	510, 662, 834, 1100
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	485
Bsa29I	ATCGAT	1 cut(s)	148
BsaJI	CCNNGG	4 cut(s)	401, 633, 660, 830
BsaWI	WCCGGW	2 cut(s)	1047, 1193
BsaXI	ACNNNNNCTCC	2 cut(s)	968, 998
Bse3DI	GCAATG	1 cut(s)	916
BseBI	CCWGG	1 cut(s)	909
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	4 cut(s)	401, 633, 660, 830
BseGI	GGATG	4 cut(s)	301, 355, 592, 880
BseMI	GCAATG	1 cut(s)	916
BseMII	CTCAG	7 cut(s)	96, 336, 374, 784, 1050, 1187, 1238
BseRI	GAGGAG	2 cut(s)	68, 363
BseSI	GKGCMC	1 cut(s)	633
BseXI	GCAGC	3 cut(s)	190, 369, 574
BshFI	GGCC	1 cut(s)	907
BshVI	ATCGAT	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	916, 999
BsiSI	CCGG	2 cut(s)	1048, 1194
BslFI	GGGAC	1 cut(s)	767
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	1 cut(s)	907
Bsp1286I	GDGCHC	4 cut(s)	278, 633, 916, 999
Bsp143I	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
Bsp19I	CCATGG	2 cut(s)	633, 830
BspACI	CCGC	3 cut(s)	257, 260, 872
BspANI	GGCC	1 cut(s)	907
BspCNI	CTCAG	7 cut(s)	97, 337, 375, 783, 1051, 1186, 1237
BspDI	ATCGAT	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	1242
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	2 cut(s)	564, 625
BspMI	ACCTGC	1 cut(s)	567
BspPI	GGATC	2 cut(s)	414, 1041
BspTI	CTTAAG	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	916
BssECI	CCNNGG	4 cut(s)	401, 633, 660, 830
BssMI	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
BssNAI	GTATAC	1 cut(s)	987
BssT1I	CCWWGG	4 cut(s)	401, 633, 660, 830
Bst1107I	GTATAC	1 cut(s)	987
Bst2UI	CCWGG	1 cut(s)	909
Bst4CI	ACNGT	5 cut(s)	78, 143, 454, 526, 668
Bst6I	CTCTTC	5 cut(s)	27, 424, 474, 510, 975
BstAFI	CTTAAG	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	225, 567, 905
BstDSI	CCRYGG	2 cut(s)	633, 830
BstF5I	GGATG	4 cut(s)	301, 355, 592, 880
BstKTI	GATC	7 cut(s)	131, 148, 152, 409, 946, 1036, 1221
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	909
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	1 cut(s)	907
BstSFI	CTRYAG	2 cut(s)	560, 621
BstSLI	GKGCMC	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	190, 369, 574
BstV2I	GAAGAC	4 cut(s)	510, 662, 834, 1100
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	837
BstYI	RGATCY	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	987
Bsu15I	ATCGAT	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	1179
BsuRI	GGCC	1 cut(s)	907
BsuTUI	ATCGAT	1 cut(s)	148
BtgI	CCRYGG	2 cut(s)	633, 830
BtsCI	GGATG	4 cut(s)	301, 355, 592, 880
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	4 cut(s)	148, 600, 618, 926
BveI	ACCTGC	1 cut(s)	567
Cac8I	GCNNGC	3 cut(s)	225, 567, 905
CciI	TCATGA	1 cut(s)	1242
Cfr13I	GGNCC	3 cut(s)	798, 887, 1050
ClaI	ATCGAT	1 cut(s)	148
CseI	GACGC	1 cut(s)	1258
Csp6I	GTAC	3 cut(s)	638, 774, 1211
CviAII	CATG	7 cut(s)	443, 634, 757, 831, 900, 941, 1243
CviQI	GTAC	3 cut(s)	638, 774, 1211
DpnI	GATC	7 cut(s)	130, 147, 151, 408, 945, 1035, 1220
DpnII	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
DraI	TTTAAA	1 cut(s)	717
Eam1104I	CTCTTC	5 cut(s)	27, 424, 474, 510, 975
EarI	CTCTTC	5 cut(s)	27, 424, 474, 510, 975
EciI	GGCGGA	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	914
Eco130I	CCWWGG	4 cut(s)	401, 633, 660, 830
Eco24I	GRGCYC	2 cut(s)	278, 916
Eco47I	GGWCC	3 cut(s)	798, 887, 1050
Eco53kI	GAGCTC	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	1094
EcoICRI	GAGCTC	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	907
EcoT14I	CCWWGG	4 cut(s)	401, 633, 660, 830
EcoT38I	GRGCYC	2 cut(s)	278, 916
ErhI	CCWWGG	4 cut(s)	401, 633, 660, 830
FaeI	CATG	7 cut(s)	446, 637, 760, 834, 903, 944, 1246
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	7 cut(s)	442, 633, 756, 830, 899, 940, 1242
FbaI	TGATCA	2 cut(s)	943, 1218
FblI	GTMKAC	1 cut(s)	986
Fnu4HI	GCNGC	4 cut(s)	204, 260, 358, 563
FokI	GGATG	4 cut(s)	308, 362, 599, 887
FriOI	GRGCYC	2 cut(s)	278, 916
Fsp4HI	GCNGC	4 cut(s)	204, 260, 358, 563
FspBI	CTAG	4 cut(s)	18, 777, 846, 882
GluI	GCNGC	4 cut(s)	204, 260, 358, 563
HaeIII	GGCC	1 cut(s)	907
HapII	CCGG	2 cut(s)	1048, 1194
HgaI	GACGC	1 cut(s)	1258
Hin1II	CATG	7 cut(s)	446, 637, 760, 834, 903, 944, 1246
HinfI	GANTC	7 cut(s)	173, 281, 385, 458, 878, 1091, 1115
HpaII	CCGG	2 cut(s)	1048, 1194
HphI	GGTGA	5 cut(s)	52, 107, 222, 417, 1281
Hpy166II	GTNNAC	1 cut(s)	987
Hpy188I	TCNGA	4 cut(s)	178, 699, 709, 1096
Hpy188III	TCNNGA	6 cut(s)	285, 323, 947, 1112, 1216, 1243
Hpy8I	GTNNAC	1 cut(s)	987
HpyAV	CCTTC	2 cut(s)	261, 744
HpyCH4III	ACNGT	5 cut(s)	78, 143, 454, 526, 668
HpyCH4IV	ACGT	1 cut(s)	1105
HpyCH4V	TGCA	8 cut(s)	14, 206, 562, 623, 824, 903, 921, 1021
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	1105
Hsp92II	CATG	7 cut(s)	446, 637, 760, 834, 903, 944, 1246
Ksp22I	TGATCA	2 cut(s)	943, 1218
Kzo9I	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
LmnI	GCTCC	4 cut(s)	187, 397, 834, 911
Lsp1109I	GCAGC	3 cut(s)	190, 369, 574
LweI	GCATC	4 cut(s)	23, 442, 859, 930
MaeI	CTAG	4 cut(s)	18, 777, 846, 882
MaeII	ACGT	1 cut(s)	1105
MaeIII	GTNAC	4 cut(s)	302, 849, 1180, 1287
MalI	GATC	7 cut(s)	130, 147, 151, 408, 945, 1035, 1220
MboI	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	4 cut(s)	278, 633, 916, 999
MlyI	GAGTC	4 cut(s)	182, 394, 887, 1100
MmeI	TCCRAC	3 cut(s)	156, 165, 273
MseI	TTAA	4 cut(s)	125, 498, 716, 972
MslI	CAYNNNNRTG	3 cut(s)	441, 829, 1244
MspCI	CTTAAG	1 cut(s)	124
MspI	CCGG	2 cut(s)	1048, 1194
MspR9I	CCNGG	1 cut(s)	909
MunI	CAATTG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	1 cut(s)	909
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	2 cut(s)	633, 830
NdeII	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
NlaIII	CATG	7 cut(s)	446, 637, 760, 834, 903, 944, 1246
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	4 cut(s)	302, 849, 1180, 1287
NspI	RCATGY	1 cut(s)	760
PagI	TCATGA	1 cut(s)	1242
PciI	ACATGT	1 cut(s)	756
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	3 cut(s)	281, 458, 1115
PkrI	GCNGC	4 cut(s)	205, 261, 359, 564
PleI	GAGTC	4 cut(s)	181, 393, 886, 1099
PpsI	GAGTC	4 cut(s)	181, 393, 886, 1099
PscI	ACATGT	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	916
Psp6I	CCWGG	1 cut(s)	907
PspGI	CCWGG	1 cut(s)	907
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	3 cut(s)	798, 887, 1050
PstI	CTGCAG	2 cut(s)	564, 625
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	3 cut(s)	639, 775, 1212
RsaNI	GTAC	3 cut(s)	638, 774, 1211
RseI	CAYNNNNRTG	3 cut(s)	441, 829, 1244
SacI	GAGCTC	1 cut(s)	916
SaqAI	TTAA	4 cut(s)	125, 498, 716, 972
SatI	GCNGC	4 cut(s)	204, 260, 358, 563
Sau3AI	GATC	7 cut(s)	128, 145, 149, 406, 943, 1033, 1218
Sau96I	GGNCC	3 cut(s)	798, 887, 1050
ScaI	AGTACT	2 cut(s)	775, 1212
SchI	GAGTC	4 cut(s)	182, 394, 887, 1100
ScrFI	CCNGG	1 cut(s)	909
SduI	GDGCHC	4 cut(s)	278, 633, 916, 999
SfaNI	GCATC	4 cut(s)	23, 442, 859, 930
SfcI	CTRYAG	2 cut(s)	560, 621
SinI	GGWCC	3 cut(s)	798, 887, 1050
SmiMI	CAYNNNNRTG	3 cut(s)	441, 829, 1244
SmlI	CTYRAG	2 cut(s)	124, 464
SmoI	CTYRAG	2 cut(s)	124, 464
SsiI	CCGC	3 cut(s)	257, 260, 872
SspMI	CTAG	4 cut(s)	18, 777, 846, 882
SstI	GAGCTC	1 cut(s)	916
StyD4I	CCNGG	1 cut(s)	907
StyI	CCWWGG	4 cut(s)	401, 633, 660, 830
TaaI	ACNGT	5 cut(s)	78, 143, 454, 526, 668
TaiI	ACGT	1 cut(s)	1108
TaqI	TCGA	2 cut(s)	148, 284
TatI	WGTACW	2 cut(s)	773, 1210
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	3 cut(s)	281, 458, 1115
Tru1I	TTAA	4 cut(s)	125, 498, 716, 972
Tru9I	TTAA	4 cut(s)	125, 498, 716, 972
TscAI	CASTG	4 cut(s)	148, 600, 625, 933
TseFI	GTSAC	4 cut(s)	302, 849, 1180, 1287
TseI	GCWGC	3 cut(s)	203, 357, 562
Tsp45I	GTSAC	4 cut(s)	302, 849, 1180, 1287
TspDTI	ATGAA	5 cut(s)	86, 462, 909, 1228, 1269
TspRI	CASTG	4 cut(s)	148, 600, 625, 933
Vha464I	CTTAAG	1 cut(s)	124
VpaK11BI	GGWCC	3 cut(s)	798, 887, 1050
XapI	RAATTY	4 cut(s)	98, 494, 541, 1065
XceI	RCATGY	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	986
XspI	CTAG	4 cut(s)	18, 777, 846, 882
ZrmI	AGTACT	2 cut(s)	775, 1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.