pycom10g21760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016522
Physical Location & Seq
Forward (+)
24328480 .. 24328767
288 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGGGGGCAATAACGGCCTCAGTGATTGCGATAGTGGGTGTGGTTCTCGGTTGGATCGCCATCGAGATTGCCTGCAAACCTTGCCTCGAACAGGGCCGCCAAGCCATCGATCGCAGCCTCAATCCCGACTACGATCCCGACAACGACGGCAGCGTTTCCGCCGACATCAGCGCTCCTCTCAACCCTCCCGCCCTCAACAACACCGCCGCGGATCTCGAGGCGGAGGATCCCAAAAGCGCCGCTGCCATCGCAGCTTCTTCTCATTCCGATGCCATCAGGGCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

9.65

Weight (kDa)

4.13

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016522)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34585
fragaria_vesca FvH4_3g05470
malus_domestica MD05G1283100.v1.1 MD10G1261400.v1.1
prunus_persica Prupe.4G081500_v2.0.a1
pyrus_communis pycom10g21760
rosa_chinensis RchiOBHm_Chr5g0014281
rosa_multiflora Rmu_sc0009295.1_g000010
rosa_roxburghii Rroxscaffold_1G00062290
rosa_rugosa Rorug05G0016800
rosa_samantha Rh5BG108400 Rh5CG120000 Rh5DG107000
rosa_wichuraiana Rw5G009700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 209
AciI CCGC 8 cut(s) 97, 159, 189, 204, 207, 209, 221, 240
AclWI GGATC 5 cut(s) 62, 128, 219, 221, 234
AfeI AGCGCT 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 5 cut(s) 62, 128, 219, 221, 234
Ama87I CYCGRG 1 cut(s) 215
Aor51HI AGCGCT 1 cut(s) 172
AoxI GGCC 3 cut(s) 15, 94, 279
ApeKI GCWGC 4 cut(s) 114, 150, 242, 251
AspLEI GCGC 2 cut(s) 173, 239
AspS9I GGNCC 2 cut(s) 94, 279
AvaI CYCGRG 1 cut(s) 215
BamHI GGATCC 1 cut(s) 226
BbvI GCAGC 4 cut(s) 126, 162, 229, 263
BccI CCATC 4 cut(s) 68, 113, 254, 281
BceAI ACGGC 3 cut(s) 30, 163, 266
BfoI RGCGCY 2 cut(s) 174, 240
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 7 cut(s) 97, 115, 151, 207, 240, 243, 252
BlsI GCNGC 7 cut(s) 98, 116, 152, 208, 241, 244, 253
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 94, 279
BmiI GGNNCC 1 cut(s) 228
BmsI GCATC 1 cut(s) 259
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse8I GATNNNNATC 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 4 cut(s) 126, 162, 229, 263
Bsh1236I CGCG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 17, 96, 281
BshVI ATCGAT 1 cut(s) 108
BsiEI CGRYCG 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 91
BsnI GGCC 3 cut(s) 17, 96, 281
BsoBI CYCGRG 1 cut(s) 215
Bsp143I GATC 5 cut(s) 54, 109, 133, 211, 226
BspACI CCGC 8 cut(s) 97, 159, 189, 204, 207, 209, 221, 240
BspANI GGCC 3 cut(s) 17, 96, 281
BspCNI CTCAG 1 cut(s) 32
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 5 cut(s) 62, 128, 219, 221, 234
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 5 cut(s) 54, 109, 133, 211, 226
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 207
BstENI CCTNNNNNAGG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 209
BstH2I RGCGCY 2 cut(s) 174, 240
BstHHI GCGC 2 cut(s) 173, 239
BstKTI GATC 5 cut(s) 57, 112, 136, 214, 229
BstMBI GATC 5 cut(s) 54, 109, 133, 211, 226
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 5 cut(s) 14, 81, 248, 251, 278
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 4 cut(s) 126, 162, 229, 263
BstX2I RGATCY 2 cut(s) 211, 226
BstYI RGATCY 2 cut(s) 211, 226
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 3 cut(s) 17, 96, 281
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 232
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 2 cut(s) 173, 239
Cfr13I GGNCC 2 cut(s) 94, 279
Cfr42I CCGCGG 1 cut(s) 210
ClaI ATCGAT 1 cut(s) 108
CviJI RGCY 6 cut(s) 17, 96, 104, 117, 254, 281
CviKI_1 RGCY 6 cut(s) 17, 96, 104, 117, 254, 281
DdeI CTNAG 1 cut(s) 19
DpnI GATC 5 cut(s) 56, 111, 135, 213, 228
DpnII GATC 5 cut(s) 54, 109, 133, 211, 226
EciI GGCGGA 2 cut(s) 148, 236
Eco47III AGCGCT 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 89
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 7 cut(s) 97, 115, 151, 207, 240, 243, 252
Fsp4HI GCNGC 7 cut(s) 97, 115, 151, 207, 240, 243, 252
GlaI GCGC 2 cut(s) 172, 238
GluI GCNGC 7 cut(s) 97, 115, 151, 207, 240, 243, 252
HaeII RGCGCY 2 cut(s) 174, 240
HaeIII GGCC 3 cut(s) 17, 96, 281
HhaI GCGC 2 cut(s) 173, 239
Hin6I GCGC 2 cut(s) 171, 237
HinP1I GCGC 2 cut(s) 171, 237
Hpy188I TCNGA 2 cut(s) 268, 287
Hpy188III TCNNGA 4 cut(s) 64, 125, 137, 215
Hpy99I CGWCG 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 81, 248, 251, 278
HpyF3I CTNAG 1 cut(s) 19
HspAI GCGC 2 cut(s) 171, 237
KspI CCGCGG 1 cut(s) 210
Kzo9I GATC 5 cut(s) 54, 109, 133, 211, 226
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 3 cut(s) 77, 85, 262
Lsp1109I GCAGC 4 cut(s) 126, 162, 229, 263
LweI GCATC 1 cut(s) 259
MalI GATC 5 cut(s) 56, 111, 135, 213, 228
MboI GATC 5 cut(s) 54, 109, 133, 211, 226
MboII GAAGA 1 cut(s) 249
MflI RGATCY 2 cut(s) 211, 226
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 8 cut(s) 28, 95, 128, 186, 195, 203, 211, 217
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 209, 242
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 5 cut(s) 14, 81, 248, 251, 278
NdeII GATC 5 cut(s) 54, 109, 133, 211, 226
NlaIV GGNNCC 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 7 cut(s) 98, 116, 152, 208, 241, 244, 253
Ple19I CGATCG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 94, 279
PsuI RGATCY 2 cut(s) 211, 226
PvuI CGATCG 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 267
SacII CCGCGG 1 cut(s) 210
SatI GCNGC 7 cut(s) 97, 115, 151, 207, 240, 243, 252
Sau3AI GATC 5 cut(s) 54, 109, 133, 211, 226
Sau96I GGNCC 2 cut(s) 94, 279
SetI ASST 2 cut(s) 82, 256
SfaNI GCATC 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 215
Sfr303I CCGCGG 1 cut(s) 210
SgrBI CCGCGG 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SsiI CCGC 8 cut(s) 97, 159, 189, 204, 207, 209, 221, 240
TaqI TCGA 4 cut(s) 63, 87, 108, 216
TauI GCSGC 3 cut(s) 99, 209, 242
TscAI CASTG 1 cut(s) 27
TseI GCWGC 4 cut(s) 114, 150, 242, 251
TspRI CASTG 1 cut(s) 27
XagI CCTNNNNNAGG 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.