Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G46460 |
| fragaria_vesca | FvH4_5g29861 FvH4_5g29861 |
| malus_domestica | MD05G1292000.v1.1 |
| prunus_persica | Prupe.4G073400_v2.0.a1 |
| pyrus_communis | pycom05g26840 pycom10g22400 |
| rosa_chinensis | RchiOBHm_Chr5g0012881 |
| rosa_laevigata | RLG00000031964 |
| rosa_multiflora | Rmu_co8223558.1_g000001 Rmu_sc0010496.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00063720 |
| rosa_rugosa | Rorug05G0005000 |
| rosa_samantha | Rh5AG098900 Rh5BG095700 Rh5CG107900 Rh5DG094400 |
| rosa_wichuraiana | Rw5G008650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 7, 175, 527 |
| AfaI | GTAC | 1 cut(s) | 14 |
| AgsI | TTSAA | 5 cut(s) | 25, 85, 109, 248, 526 |
| AhlI | ACTAGT | 1 cut(s) | 164 |
| AleI | CACNNNNGTG | 1 cut(s) | 393 |
| AluBI | AGCT | 3 cut(s) | 33, 230, 603 |
| AluI | AGCT | 3 cut(s) | 33, 230, 603 |
| Alw21I | GWGCWC | 2 cut(s) | 385, 558 |
| Alw26I | GTCTC | 1 cut(s) | 209 |
| Alw44I | GTGCAC | 1 cut(s) | 381 |
| ApaLI | GTGCAC | 1 cut(s) | 381 |
| ApeKI | GCWGC | 4 cut(s) | 183, 227, 472, 486 |
| ApoI | RAATTY | 3 cut(s) | 7, 175, 527 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 113 |
| AsuHPI | GGTGA | 2 cut(s) | 556, 592 |
| BaeGI | GKGCMC | 1 cut(s) | 385 |
| BbsI | GAAGAC | 2 cut(s) | 147, 274 |
| Bbv12I | GWGCWC | 2 cut(s) | 385, 558 |
| BbvI | GCAGC | 4 cut(s) | 170, 239, 459, 498 |
| BceAI | ACGGC | 2 cut(s) | 75, 240 |
| BclI | TGATCA | 1 cut(s) | 202 |
| BcoDI | GTCTC | 1 cut(s) | 209 |
| BcuI | ACTAGT | 1 cut(s) | 164 |
| BfaI | CTAG | 1 cut(s) | 165 |
| BglII | AGATCT | 1 cut(s) | 196 |
| BisI | GCNGC | 4 cut(s) | 184, 228, 473, 487 |
| BlsI | GCNGC | 4 cut(s) | 185, 229, 474, 488 |
| BmsI | GCATC | 1 cut(s) | 91 |
| BpiI | GAAGAC | 2 cut(s) | 147, 274 |
| BpuEI | CTTGAG | 1 cut(s) | 572 |
| BsaBI | GATNNNNATC | 1 cut(s) | 201 |
| BsaWI | WCCGGW | 1 cut(s) | 423 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 306, 336 |
| Bse3DI | GCAATG | 1 cut(s) | 274 |
| Bse8I | GATNNNNATC | 1 cut(s) | 201 |
| BseGI | GGATG | 6 cut(s) | 80, 259, 383, 432, 504, 580 |
| BseJI | GATNNNNATC | 1 cut(s) | 201 |
| BseMI | GCAATG | 1 cut(s) | 274 |
| BseSI | GKGCMC | 1 cut(s) | 385 |
| BseXI | GCAGC | 4 cut(s) | 170, 239, 459, 498 |
| BsiHKAI | GWGCWC | 2 cut(s) | 385, 558 |
| BsiSI | CCGG | 1 cut(s) | 424 |
| BslFI | GGGAC | 1 cut(s) | 134 |
| BsmAI | GTCTC | 1 cut(s) | 209 |
| BsmFI | GGGAC | 1 cut(s) | 134 |
| Bsp1286I | GDGCHC | 2 cut(s) | 385, 558 |
| Bsp143I | GATC | 2 cut(s) | 196, 202 |
| BsrDI | GCAATG | 1 cut(s) | 274 |
| BssMI | GATC | 2 cut(s) | 196, 202 |
| Bst4CI | ACNGT | 2 cut(s) | 89, 392 |
| BstC8I | GCNNGC | 2 cut(s) | 35, 484 |
| BstF5I | GGATG | 6 cut(s) | 80, 259, 383, 432, 504, 580 |
| BstKTI | GATC | 2 cut(s) | 199, 205 |
| BstMAI | GTCTC | 1 cut(s) | 209 |
| BstMBI | GATC | 2 cut(s) | 196, 202 |
| BstNSI | RCATGY | 1 cut(s) | 486 |
| BstSLI | GKGCMC | 1 cut(s) | 385 |
| BstV1I | GCAGC | 4 cut(s) | 170, 239, 459, 498 |
| BstV2I | GAAGAC | 2 cut(s) | 147, 274 |
| BstX2I | RGATCY | 1 cut(s) | 196 |
| BstYI | RGATCY | 1 cut(s) | 196 |
| BtsCI | GGATG | 6 cut(s) | 80, 259, 383, 432, 504, 580 |
| Cac8I | GCNNGC | 2 cut(s) | 35, 484 |
| Csp6I | GTAC | 1 cut(s) | 13 |
| CviAII | CATG | 3 cut(s) | 124, 304, 483 |
| CviJI | RGCY | 8 cut(s) | 33, 62, 230, 407, 448, 472, 489, 603 |
| CviKI_1 | RGCY | 8 cut(s) | 33, 62, 230, 407, 448, 472, 489, 603 |
| CviQI | GTAC | 1 cut(s) | 13 |
| DpnI | GATC | 2 cut(s) | 198, 204 |
| DpnII | GATC | 2 cut(s) | 196, 202 |
| DraI | TTTAAA | 1 cut(s) | 174 |
| EcoRI | GAATTC | 1 cut(s) | 7 |
| FaeI | CATG | 3 cut(s) | 127, 307, 486 |
| FaiI | YATR | 7 cut(s) | 55, 125, 288, 305, 484, 561, 569 |
| FaqI | GGGAC | 1 cut(s) | 134 |
| FatI | CATG | 3 cut(s) | 123, 303, 482 |
| FbaI | TGATCA | 1 cut(s) | 202 |
| Fnu4HI | GCNGC | 4 cut(s) | 184, 228, 473, 487 |
| FokI | GGATG | 6 cut(s) | 87, 266, 390, 439, 511, 587 |
| Fsp4HI | GCNGC | 4 cut(s) | 184, 228, 473, 487 |
| FspBI | CTAG | 1 cut(s) | 165 |
| GluI | GCNGC | 4 cut(s) | 184, 228, 473, 487 |
| HapII | CCGG | 1 cut(s) | 424 |
| Hin1II | CATG | 3 cut(s) | 127, 307, 486 |
| HincII | GTYRAC | 2 cut(s) | 92, 235 |
| HindII | GTYRAC | 2 cut(s) | 92, 235 |
| HinfI | GANTC | 1 cut(s) | 217 |
| HpaI | GTTAAC | 1 cut(s) | 235 |
| HpaII | CCGG | 1 cut(s) | 424 |
| HphI | GGTGA | 2 cut(s) | 556, 592 |
| Hpy166II | GTNNAC | 3 cut(s) | 92, 235, 383 |
| Hpy188III | TCNNGA | 1 cut(s) | 200 |
| Hpy8I | GTNNAC | 3 cut(s) | 92, 235, 383 |
| HpyAV | CCTTC | 2 cut(s) | 103, 152 |
| HpyCH4III | ACNGT | 2 cut(s) | 89, 392 |
| HpyCH4IV | ACGT | 1 cut(s) | 237 |
| HpyCH4V | TGCA | 7 cut(s) | 37, 272, 297, 383, 482, 486, 505 |
| HpySE526I | ACGT | 1 cut(s) | 237 |
| Hsp92II | CATG | 3 cut(s) | 127, 307, 486 |
| Ksp22I | TGATCA | 1 cut(s) | 202 |
| KspAI | GTTAAC | 1 cut(s) | 235 |
| Kzo9I | GATC | 2 cut(s) | 196, 202 |
| LmnI | GCTCC | 1 cut(s) | 600 |
| LpnPI | CCDG | 9 cut(s) | 57, 103, 191, 342, 423, 437, 453, 462, 480 |
| Lsp1109I | GCAGC | 4 cut(s) | 170, 239, 459, 498 |
| LweI | GCATC | 1 cut(s) | 91 |
| MaeI | CTAG | 1 cut(s) | 165 |
| MaeII | ACGT | 1 cut(s) | 237 |
| MalI | GATC | 2 cut(s) | 198, 204 |
| MboI | GATC | 2 cut(s) | 196, 202 |
| MboII | GAAGA | 5 cut(s) | 110, 147, 206, 274, 601 |
| MflI | RGATCY | 1 cut(s) | 196 |
| MhlI | GDGCHC | 2 cut(s) | 385, 558 |
| MluCI | AATT | 4 cut(s) | 7, 175, 333, 527 |
| MlyI | GAGTC | 1 cut(s) | 211 |
| MmeI | TCCRAC | 2 cut(s) | 355, 566 |
| MnlI | CCTC | 2 cut(s) | 535, 591 |
| MroXI | GAANNNNTTC | 1 cut(s) | 113 |
| MseI | TTAA | 5 cut(s) | 68, 173, 234, 327, 420 |
| MslI | CAYNNNNRTG | 2 cut(s) | 99, 393 |
| MspA1I | CMGCKG | 1 cut(s) | 230 |
| MspI | CCGG | 1 cut(s) | 424 |
| NdeII | GATC | 2 cut(s) | 196, 202 |
| NlaIII | CATG | 3 cut(s) | 127, 307, 486 |
| NspI | RCATGY | 1 cut(s) | 486 |
| OliI | CACNNNNGTG | 1 cut(s) | 393 |
| PaeI | GCATGC | 1 cut(s) | 486 |
| PdmI | GAANNNNTTC | 1 cut(s) | 113 |
| PkrI | GCNGC | 4 cut(s) | 185, 229, 474, 488 |
| PleI | GAGTC | 1 cut(s) | 211 |
| PpsI | GAGTC | 1 cut(s) | 211 |
| PsuI | RGATCY | 1 cut(s) | 196 |
| PvuII | CAGCTG | 1 cut(s) | 230 |
| RsaI | GTAC | 1 cut(s) | 14 |
| RsaNI | GTAC | 1 cut(s) | 13 |
| RseI | CAYNNNNRTG | 2 cut(s) | 99, 393 |
| SaqAI | TTAA | 5 cut(s) | 68, 173, 234, 327, 420 |
| SatI | GCNGC | 4 cut(s) | 184, 228, 473, 487 |
| Sau3AI | GATC | 2 cut(s) | 196, 202 |
| SchI | GAGTC | 1 cut(s) | 211 |
| SduI | GDGCHC | 2 cut(s) | 385, 558 |
| SetI | ASST | 9 cut(s) | 35, 114, 232, 240, 244, 313, 442, 546, 605 |
| SfaNI | GCATC | 1 cut(s) | 91 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 99, 393 |
| SmlI | CTYRAG | 1 cut(s) | 551 |
| SmoI | CTYRAG | 1 cut(s) | 551 |
| SpeI | ACTAGT | 1 cut(s) | 164 |
| SphI | GCATGC | 1 cut(s) | 486 |
| Sse9I | AATT | 4 cut(s) | 7, 175, 333, 527 |
| SspI | AATATT | 1 cut(s) | 349 |
| SspMI | CTAG | 1 cut(s) | 165 |
| TaaI | ACNGT | 2 cut(s) | 89, 392 |
| TaiI | ACGT | 1 cut(s) | 240 |
| TasI | AATT | 4 cut(s) | 7, 175, 333, 527 |
| Tru1I | TTAA | 5 cut(s) | 68, 173, 234, 327, 420 |
| Tru9I | TTAA | 5 cut(s) | 68, 173, 234, 327, 420 |
| TseI | GCWGC | 4 cut(s) | 183, 227, 472, 486 |
| TspDTI | ATGAA | 4 cut(s) | 143, 320, 468, 576 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| VneI | GTGCAC | 1 cut(s) | 381 |
| XapI | RAATTY | 3 cut(s) | 7, 175, 527 |
| XceI | RCATGY | 1 cut(s) | 486 |
| XmnI | GAANNNNTTC | 1 cut(s) | 113 |
| XspI | CTAG | 1 cut(s) | 165 |