pycom10g24350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0018000
Physical Location & Seq
Reverse (-)
26236831 .. 26237370
540 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 540 bp
ATGGCTGCCGGCCTGCAAAATAAGATTGCGGTGGATGTTGCAGCCGATAGCAGTTCGCTCGATTCCTTCTCGTTCGCTGACCTCCTGTGTGTTCAGGATCAGCAATCCCAGTGCCTTCCTGCTAAAAAACCCAATCAAATTCACAAACAAGGCAGAGAGTTTGAGTTTAGTTACTCAGAGTCCATAGTGACCGACCCAATCGAGCATTACCCGGCAGACCTGTTGATCTCGAATGGTCAGATCATACCTAAAGCAACCGCGATTGAATCAACACAGCGTGTGGATACAGACCAGCTCAGCATCAAAGGTCCAGTACGAGCAACACGTACCAGAAATATGAGATCAACTGATACCACCGGTGTCACAGAAGTATATGCTAAGTCACATCCAGAATCCAGAAACCAAGAGCAAAAGGAGAAGCCTGCAACCAGATCATCTTTCGGCAAGAAAATGTTCAAGTCATTTGTCTTCCCTTGCAATGCATGCAAAGTTGCTAAGCCAATCGAGGGAGCACATAGAGTGTCGGGAAAGTCACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

19.71

Weight (kDa)

8.88

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018000)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08820
prunus_persica Prupe.4G050900_v2.0.a1
pyrus_communis pycom10g24350
rosa_laevigata RLG00000031618
rosa_multiflora Rmu_sc0004677.1_g000019
rosa_roxburghii Rroxscaffold_1G00067080
rosa_rugosa Rorug04G0440400
rosa_samantha Rh5AG069100 Rh5BG065900 Rh5CG077100 Rh5DG064900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 2 cut(s) 29, 258
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 138
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 2 cut(s) 315, 328
AfiI CCNNNNNNNGG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 323
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 2 cut(s) 266, 457
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 514
AlwI GGATC 1 cut(s) 105
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 5, 41
ApoI RAATTY 1 cut(s) 138
AsiGI ACCGGT 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciVI GTATCC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 212
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 2 cut(s) 6, 42
BlpI GCTNAGC 2 cut(s) 296, 495
BlsI GCNGC 2 cut(s) 7, 43
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 460
Bpu1102I GCTNAGC 2 cut(s) 296, 495
BpuMI CCSGG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse118I RCCGGY 2 cut(s) 8, 356
Bse1I ACTGG 2 cut(s) 109, 311
Bse3DI GCAATG 1 cut(s) 484
BseGI GGATG 2 cut(s) 40, 385
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 2 cut(s) 189, 310
BseNI ACTGG 2 cut(s) 109, 311
BseXI GCAGC 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 1 cut(s) 12
BshTI ACCGGT 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 514
BsiSI CCGG 3 cut(s) 9, 212, 357
BslI CCNNNNNNNGG 1 cut(s) 506
BsnI GGCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 5 cut(s) 97, 225, 240, 341, 431
Bsp1720I GCTNAGC 2 cut(s) 296, 495
BspACI CCGC 2 cut(s) 29, 258
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 188, 309
BspFNI CGCG 1 cut(s) 260
BspPI GGATC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 484
BsrFI RCCGGY 2 cut(s) 8, 356
BsrI ACTGG 2 cut(s) 109, 311
BssAI RCCGGY 2 cut(s) 8, 356
BssMI GATC 5 cut(s) 97, 225, 240, 341, 431
BstAPI GCANNNNNTGC 1 cut(s) 483
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 4 cut(s) 10, 14, 423, 484
BstDEI CTNAG 4 cut(s) 175, 296, 378, 495
BstF5I GGATG 2 cut(s) 40, 385
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 5 cut(s) 100, 228, 243, 344, 434
BstMBI GATC 5 cut(s) 97, 225, 240, 341, 431
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 210
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 460
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 40, 385
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 4 cut(s) 10, 14, 423, 484
Cfr10I RCCGGY 2 cut(s) 8, 356
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 2 cut(s) 314, 327
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 1 cut(s) 483
CviJI RGCY 6 cut(s) 5, 12, 44, 295, 421, 499
CviKI_1 RGCY 6 cut(s) 5, 12, 44, 295, 421, 499
CviQI GTAC 2 cut(s) 314, 327
DdeI CTNAG 4 cut(s) 175, 296, 378, 495
DpnI GATC 5 cut(s) 99, 227, 242, 343, 433
DpnII GATC 5 cut(s) 97, 225, 240, 341, 431
DraIII CACNNNGTG 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 484
FaeI CATG 1 cut(s) 486
FaiI YATR 7 cut(s) 185, 245, 338, 373, 375, 484, 516
FatI CATG 1 cut(s) 482
Fnu4HI GCNGC 2 cut(s) 6, 42
FokI GGATG 2 cut(s) 47, 372
Fsp4HI GCNGC 2 cut(s) 6, 42
GluI GCNGC 2 cut(s) 6, 42
HaeIII GGCC 1 cut(s) 12
HapII CCGG 3 cut(s) 9, 212, 357
Hin1II CATG 1 cut(s) 486
HinfI GANTC 4 cut(s) 62, 179, 266, 392
HpaII CCGG 3 cut(s) 9, 212, 357
Hpy188I TCNGA 2 cut(s) 178, 240
Hpy188III TCNNGA 5 cut(s) 95, 229, 389, 396, 525
HpyAV CCTTC 2 cut(s) 76, 125
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 6 cut(s) 16, 41, 425, 477, 482, 486
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 4 cut(s) 175, 296, 378, 495
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 1 cut(s) 486
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
Kzo9I GATC 5 cut(s) 97, 225, 240, 341, 431
LmnI GCTCC 1 cut(s) 509
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 309
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 5 cut(s) 170, 187, 361, 381, 531
MalI GATC 5 cut(s) 99, 227, 242, 343, 433
MboI GATC 5 cut(s) 97, 225, 240, 341, 431
MboII GAAGA 1 cut(s) 460
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 1 cut(s) 138
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 92, 499
Mph1103I ATGCAT 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 452
MspI CCGG 3 cut(s) 9, 212, 357
MspR9I CCNGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 483
NaeI GCCGGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 212
NdeII GATC 5 cut(s) 97, 225, 240, 341, 431
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 1 cut(s) 486
NmuCI GTSAC 4 cut(s) 187, 361, 381, 531
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 1 cut(s) 486
PaeI GCATGC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PdiI GCCGGC 1 cut(s) 10
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 3 cut(s) 62, 266, 392
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 2 cut(s) 7, 43
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 326
PspPI GGNCC 1 cut(s) 308
RsaI GTAC 2 cut(s) 315, 328
RsaNI GTAC 2 cut(s) 314, 327
SatI GCNGC 2 cut(s) 6, 42
Sau3AI GATC 5 cut(s) 97, 225, 240, 341, 431
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 514
SetI ASST 6 cut(s) 84, 222, 250, 297, 310, 328
SfaNI GCATC 1 cut(s) 309
SgrAI CRCCGGYG 1 cut(s) 356
SinI GGWCC 1 cut(s) 308
SphI GCATGC 1 cut(s) 486
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 29, 258
StyD4I CCNGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 328
TaqI TCGA 4 cut(s) 60, 201, 230, 504
TaqII GACCGA 1 cut(s) 206
TasI AATT 1 cut(s) 138
TfiI GAWTC 3 cut(s) 62, 266, 392
TscAI CASTG 1 cut(s) 116
TseFI GTSAC 4 cut(s) 187, 361, 381, 531
TseI GCWGC 2 cut(s) 5, 41
Tsp45I GTSAC 4 cut(s) 187, 361, 381, 531
TspRI CASTG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 1 cut(s) 138
XceI RCATGY 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 452
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.