Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012342

Physical Location & Seq

Genomic Coordinates Forward (+)

26530499 .. 26530933

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATCCGAAGCTCTTCGCCAAAACCCTAATCCAAAATGCGATGGCGAGCAGGTCCTACTACACGAGCAGGACCAAGAAGCCGACCCAATACAACAAAATCAGTCCGCTCGGAAACCCTAGCCTGAACGTGGTTCCGGAGCTCGACGACTGGGTCTTCAATGGCAACAAGGTCCGAGTCTCGGAGCTTCAGCGCATCATTCACGACCTCCGCAAGCGGAAACGCTTCTCACAAGCCCTCCAGGTTTTCTCTCTTCCCTTGCAATTTGCGTTATCCCCTGTTTGGTTGCTCAGAAAATGGAAGAAAATTGAAACAAGCATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

109

Amino Acids

12.66

Weight (kDa)

10.55

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012342)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21705
fragaria_vesca	FvH4_3g09350
malus_domestica	MD00G1095800.v1.1 MD05G1313800.v1.1
prunus_persica	Prupe.4G045900_v2.0.a1
pyrus_communis	pycom05g29160 pycom10g24750
rosa_chinensis	RchiOBHm_Chr5g0008241
rosa_laevigata	RLG00000031552
rosa_multiflora	Rmu_co8293593.1_g000001 Rmu_sc0001387.1_g000002 Rmu_sc0001626.1_g000024
rosa_roxburghii	Rroxscaffold_1G00068250
rosa_rugosa	Rorug04G0434700
rosa_samantha	Rh5AG063000 Rh5BG059200 Rh5CG069900 Rh5DG058800
rosa_wichuraiana	Rw5G005800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	42
AccBSI	CCGCTC	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	3 cut(s)	107, 211, 217
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	130, 181, 282
AgsI	TTSAA	2 cut(s)	160, 311
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	13, 142, 187
AluI	AGCT	3 cut(s)	13, 142, 187
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	136
Asp700I	GAANNNNTTC	2 cut(s)	14, 224
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	54, 72, 172
AvaII	GGWCC	3 cut(s)	54, 72, 172
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	3 cut(s)	54, 72, 172
BmgT120I	GGNCC	3 cut(s)	54, 72, 172
BmiI	GGNNCC	2 cut(s)	6, 135
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 181, 282
Bse1I	ACTGG	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	130, 181, 282
BseMII	CTCAG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	3 cut(s)	130, 181, 282
BsmAI	GTCTC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	3 cut(s)	107, 211, 217
BspCNI	CTCAG	1 cut(s)	303
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	6, 135
BspMI	ACCTGC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	1 cut(s)	4
BssSI	CACGAG	1 cut(s)	64
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	20, 258
BstC8I	GCNNGC	2 cut(s)	49, 215
BstDEI	CTNAG	1 cut(s)	290
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtgZI	GCGATG	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	49, 215
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	54, 72, 172
CviJI	RGCY	6 cut(s)	13, 82, 123, 142, 187, 236
CviKI_1	RGCY	6 cut(s)	13, 82, 123, 142, 187, 236
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eam1104I	CTCTTC	2 cut(s)	20, 258
EarI	CTCTTC	2 cut(s)	20, 258
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	54, 72, 172
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	224
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	137
Hpy188I	TCNGA	5 cut(s)	9, 113, 176, 184, 293
Hpy188III	TCNNGA	2 cut(s)	137, 203
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	129
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	139, 184
LpnPI	CCDG	8 cut(s)	37, 55, 136, 137, 150, 227, 254, 291
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	129
MalI	GATC	1 cut(s)	6
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	1 cut(s)	4
MboII	GAAGA	4 cut(s)	7, 148, 245, 313
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	263, 306
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	2 cut(s)	218, 248
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	2 cut(s)	14, 224
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	2 cut(s)	6, 135
PciSI	GCTCTTC	1 cut(s)	20
PdmI	GAANNNNTTC	2 cut(s)	14, 224
PflFI	GACNNNGTC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	6, 135
PspPI	GGNCC	3 cut(s)	54, 72, 172
PspPPI	RGGWCCY	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	3 cut(s)	54, 72, 172
SchI	GAGTC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	15, 56, 132, 144, 174, 189, 210, 246
SfaNI	GCATC	1 cut(s)	204
SinI	GGWCC	3 cut(s)	54, 72, 172
Sse9I	AATT	2 cut(s)	263, 306
SsiI	CCGC	3 cut(s)	107, 211, 217
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	240
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	144
TasI	AATT	2 cut(s)	263, 306
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	3 cut(s)	54, 72, 172
XmnI	GAANNNNTTC	2 cut(s)	14, 224
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.