Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012906

Physical Location & Seq

Genomic Coordinates Reverse (-)

27224900 .. 27225380

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTAGGCCCCCATGAAAGAAGACTTGGCGTGAGGGCAAGTAGTGGAAAAGGAGATGCAGAGAAGAAAGAAAGACGACCTTTCTTAACCCTGGAAGAAGCCGGTCCGGTAGAAATCTTCGGTCTCAGCACTCACGCAAGATTTCTACGTCGTTTAGCGATATCGTCATTGAATTTGCTGAGAGTGATGTCAGTGCAGGAAGGATGCCAAATTGAGGAGCTAAATGCTGGGAAGGTATGTGACTGGTTCGTGAAGGATAAGTTGAAAAGAGAGCAGAACTTAGACTCTGCTGTCCTCCAATGGGATGATTCCGAGCTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.17

Weight (kDa)

6.74

Isoelectric Point (pI)

65.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21445
fragaria_vesca	FvH4_3g03820 FvH4_3g03870
malus_domestica	MD05G1326300.v1.1 MD10G1304300.v1.1
prunus_persica	Prupe.4G035400_v2.0.a1
pyrus_communis	pycom05g30070 pycom10g25680
rosa_chinensis	RchiOBHm_Chr5g0006121
rosa_laevigata	RLG00000031381
rosa_multiflora	Rmu_sc0004331.1_g000011
rosa_roxburghii	Rroxscaffold_1G00069880
rosa_rugosa	Rorug04G0419600
rosa_samantha	Rh5AG047400 Rh5BG046100 Rh5CG054800 Rh5DG045900
rosa_wichuraiana	Rw5G004730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	172
AfiI	CCNNNNNNNGG	2 cut(s)	214, 301
AgsI	TTSAA	2 cut(s)	172, 265
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	2 cut(s)	220, 316
AluI	AGCT	2 cut(s)	220, 316
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	8, 104
AvaII	GGWCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	8, 104
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	46, 194
BpiI	GAAGAC	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 301
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	209, 310
BseLI	CCNNNNNNNGG	2 cut(s)	214, 301
BseMII	CTCAG	2 cut(s)	139, 170
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	102, 107
BslI	CCNNNNNNNGG	2 cut(s)	214, 301
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	9
Bso31I	GGTCTC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	2 cut(s)	138, 171
BspLI	GGNNCC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	125, 179, 280
BstF5I	GGATG	2 cut(s)	209, 310
BstMAI	GTCTC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	209, 310
BtsIMutI	CAGTG	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	8, 104
CpoI	CGGWCCG	1 cut(s)	104
CspI	CGGWCCG	1 cut(s)	104
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	9, 101, 220, 316
CviKI_1	RGCY	4 cut(s)	9, 101, 220, 316
DdeI	CTNAG	3 cut(s)	125, 179, 280
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	162
FaeI	CATG	1 cut(s)	17
FaiI	YATR	2 cut(s)	15, 238
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FatI	CATG	1 cut(s)	13
FokI	GGATG	2 cut(s)	216, 317
GsaI	CCCAGC	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	2 cut(s)	102, 107
Hin1II	CATG	1 cut(s)	17
HinfI	GANTC	2 cut(s)	284, 308
HpaII	CCGG	2 cut(s)	102, 107
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	3 cut(s)	194, 226, 247
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	59, 196
HpyF3I	CTNAG	3 cut(s)	125, 179, 280
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	77, 104, 115, 120, 182, 213, 229
LweI	GCATC	2 cut(s)	46, 194
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	239
MboII	GAAGA	4 cut(s)	33, 76, 107, 109
MluCI	AATT	2 cut(s)	172, 210
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	27, 208, 305
MseI	TTAA	1 cut(s)	86
MspI	CCGG	2 cut(s)	102, 107
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	8, 104
Rsr2I	CGGWCCG	1 cut(s)	104
RsrII	CGGWCCG	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	86
Sau96I	GGNCC	2 cut(s)	8, 104
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	5 cut(s)	82, 151, 222, 237, 318
SfaNI	GCATC	2 cut(s)	46, 194
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	2 cut(s)	172, 210
StyD4I	CCNGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	151
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	172, 210
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	239
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.