pycom10g27220

ATP synthase gamma chain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
28253899 .. 28255023
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1125 bp
ATGTCTTGCTCGAATTTGACAATGTGGGTGTCCTCAAAACCCTCCCTTTCCGACGCCTCCGCCCTCTCCTGCCGCTCCTTCATCGCCCCTCTTCAGCTTCCCTCCCAAAACTCCCTTCCCGCCTCGCGATCGTCATCTGTGACACCGGTTCAATGCGGTCTACGCGAGCTTCGAGAGCGTATTTCATCAGTGAAGAACACGCAGAAGATCACTGAGGCTATGAAGCTTGTGGCAGCCGCCAAAGTCCGCCGAGCTCAAGAGGCTGTCGTTAATGGCAGACCCTTCTCGGAAACCCTAGTTGAAGTTCTTTACAACATCAATGAGCAGCTCCAAGTGGAAGACATTGATGCTCCTCTGACCAAAGTTAGGCCAGTCAAGAAAGTTGCTCTCGTTGTCATAACCGGGGATCGCGGTCTTTGCGGAGGGTTCAACAATATGATCATCAAAAAAGCAGAGAGAAGAATAGCGGAATTGAAGGCTCTTGGTCTCGAATTCACCATCATCAGCGTCGGTAAAAAGGGTAACTCGTATTTCCTCCGCCGGCCTTACATTCCGGTTGATAAGTTTCTCGAGGGAACCAACCTCCCAACCGCCAAAGAAGCGCAGGCCATCGCCGATGATGTTTTCTCCCTTTTCGTGAGCGAAGAGGTCGACAAAGTCGAGCTTTTGTACACGAAATTCGTGTCGCTGGTTAAATCCGACCCTGTGATTCACACCCTGCTTCCACTCTCGCCAAAAGGAGAGATTTGCGACATCAATGGCGTTTGTGTGGACGCCGTGGATGATGAGTTCTTCAGGCTGACAACAAAGGAAGGGAAATTGACAGTGGAGAGAGATGTCATCAAGACGCAGACCGTGGATTTCACTCCGGTTTTACAGTTTGAGCAGGATCCGGTTCAGATTCTCGACGCTTTGCTGCCCTTGTACCTCAACAGTCAGATTTTGAGGGCATTGCAGGAGTCTCTAGCCAGTGAGCTTGCTGCTAGGATGACCGCTATGAGCAATGCAACCGATAACGCTGTTGAGTTGAAGAAAACCTTGTCGCAGGCCTACAATCGGCAGCGCCAGGCAAAAATCACCGGAGAGATTTTGGAGATTGTTTCGGGTGCCAACGCTTTGGTCTAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

375

Amino Acids

41.14

Weight (kDa)

7.51

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 54 - 373 1e-93 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015012)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04640
fragaria_vesca FvH4_3g02060
malus_domestica MD05G1347300.v1.1 MD10G1321500.v1.1
prunus_persica Prupe.4G020800_v2.0.a1
pyrus_communis pycom05g31500 pycom10g27220
rosa_chinensis RchiOBHm_Chr5g0002961
rosa_laevigata RLG00000031074
rosa_multiflora Rmu_sc0013603.1_g000002
rosa_rugosa Rorug04G0400900
rosa_samantha Rh5AG023900 Rh5BG026600 Rh5CG026700 Rh5DG025200
rosa_wichuraiana Rw5G002260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1106
AccBSI CCGCTC 1 cut(s) 75
AccI GTMKAC 2 cut(s) 160, 651
AccII CGCG 3 cut(s) 127, 165, 411
AclWI GGATC 3 cut(s) 414, 884, 897
AcsI RAATTY 3 cut(s) 13, 491, 677
AcuI CTGAAG 2 cut(s) 77, 778
AcyI GRCGYC 2 cut(s) 54, 774
AfaI GTAC 2 cut(s) 671, 926
AfiI CCNNNNNNNGG 2 cut(s) 366, 1056
AgeI ACCGGT 1 cut(s) 145
AgsI TTSAA 5 cut(s) 152, 302, 430, 475, 1030
AjnI CCWGG 1 cut(s) 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AloI GAACNNNNNNTCC 2 cut(s) 773, 805
AluBI AGCT 7 cut(s) 97, 169, 226, 254, 328, 664, 976
AluI AGCT 7 cut(s) 97, 169, 226, 254, 328, 664, 976
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 491, 966
AlwI GGATC 3 cut(s) 414, 884, 897
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 4 cut(s) 368, 542, 606, 1047
ApeKI GCWGC 5 cut(s) 233, 325, 916, 980, 1060
ApoI RAATTY 3 cut(s) 13, 491, 677
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AsiGI ACCGGT 1 cut(s) 145
AspLEI GCGC 2 cut(s) 604, 1065
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 487, 1069
AvaI CYCGRG 1 cut(s) 569
BamHI GGATCC 1 cut(s) 889
BanI GGYRCC 1 cut(s) 1106
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 256
BbvI GCAGC 5 cut(s) 245, 337, 903, 967, 1072
BccI CCATC 2 cut(s) 506, 617
BceAI ACGGC 1 cut(s) 761
BciT130I CCWGG 1 cut(s) 1067
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 403
BcoDI GTCTC 2 cut(s) 491, 966
BfaI CTAG 4 cut(s) 296, 965, 984, 1123
BfoI RGCGCY 1 cut(s) 1066
BisI GCNGC 7 cut(s) 73, 234, 237, 326, 917, 981, 1061
BlsI GCNGC 7 cut(s) 74, 235, 238, 327, 918, 982, 1062
Bme1390I CCNGG 2 cut(s) 403, 1067
BmeT110I CYCGRG 1 cut(s) 569
BmiI GGNNCC 3 cut(s) 577, 891, 1108
BmrFI CCNGG 2 cut(s) 403, 1067
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 403
BsaBI GATNNNNATC 1 cut(s) 133
BsaHI GRCGYC 2 cut(s) 54, 774
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 402, 777, 855
BsaWI WCCGGW 5 cut(s) 145, 553, 868, 892, 1079
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 1056
Bse118I RCCGGY 2 cut(s) 145, 540
Bse1I ACTGG 2 cut(s) 371, 969
Bse3DI GCAATG 2 cut(s) 950, 1009
Bse8I GATNNNNATC 1 cut(s) 133
BseBI CCWGG 1 cut(s) 1067
BseDI CCNNGG 3 cut(s) 402, 777, 855
BseGI GGATG 2 cut(s) 787, 993
BseJI GATNNNNATC 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 366, 1056
BseMI GCAATG 2 cut(s) 950, 1009
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 371, 969
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 5 cut(s) 245, 337, 903, 967, 1072
Bsh1236I CGCG 3 cut(s) 127, 165, 411
Bsh1285I CGRYCG 1 cut(s) 131
BshFI GGCC 4 cut(s) 370, 544, 608, 1049
BshNI GGYRCC 1 cut(s) 1106
BshTI ACCGGT 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 256
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 7 cut(s) 146, 402, 541, 554, 869, 893, 1080
BslI CCNNNNNNNGG 2 cut(s) 366, 1056
BsmAI GTCTC 2 cut(s) 491, 966
BsnI GGCC 4 cut(s) 370, 544, 608, 1049
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 256
Bsp1407I TGTACA 1 cut(s) 669
Bsp143I GATC 5 cut(s) 128, 207, 406, 438, 889
Bsp68I TCGCGA 1 cut(s) 127
BspANI GGCC 4 cut(s) 370, 544, 608, 1049
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 3 cut(s) 127, 165, 411
BspLI GGNNCC 3 cut(s) 577, 891, 1108
BspPI GGATC 3 cut(s) 414, 884, 897
BspT107I GGYRCC 1 cut(s) 1106
BspTNI GGTCTC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 75
BsrDI GCAATG 2 cut(s) 950, 1009
BsrFI RCCGGY 2 cut(s) 145, 540
BsrGI TGTACA 1 cut(s) 669
BsrI ACTGG 2 cut(s) 371, 969
BssAI RCCGGY 2 cut(s) 145, 540
BssECI CCNNGG 3 cut(s) 402, 777, 855
BssMI GATC 5 cut(s) 128, 207, 406, 438, 889
BssNI GRCGYC 2 cut(s) 54, 774
Bst2UI CCWGG 1 cut(s) 1067
Bst4CI ACNGT 4 cut(s) 826, 856, 879, 935
Bst6I CTCTTC 2 cut(s) 96, 639
BstACI GRCGYC 2 cut(s) 54, 774
BstAUI TGTACA 1 cut(s) 669
BstC8I GCNNGC 5 cut(s) 167, 542, 606, 978, 1047
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 2 cut(s) 777, 855
BstF5I GGATG 2 cut(s) 787, 993
BstFNI CGCG 3 cut(s) 127, 165, 411
BstH2I RGCGCY 1 cut(s) 1066
BstHHI GCGC 2 cut(s) 604, 1065
BstKTI GATC 5 cut(s) 131, 210, 409, 441, 892
BstMAI GTCTC 2 cut(s) 491, 966
BstMBI GATC 5 cut(s) 128, 207, 406, 438, 889
BstMCI CGRYCG 1 cut(s) 131
BstMWI GCNNNNNNNGC 5 cut(s) 162, 175, 260, 417, 599
BstNI CCWGG 1 cut(s) 1067
BstSCI CCNGG 2 cut(s) 401, 1065
BstUI CGCG 3 cut(s) 127, 165, 411
BstV1I GCAGC 5 cut(s) 245, 337, 903, 967, 1072
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 889
BstXI CCANNNNNNTGG 1 cut(s) 1117
BstYI RGATCY 1 cut(s) 889
BsuRI GGCC 4 cut(s) 370, 544, 608, 1049
BtgI CCRYGG 2 cut(s) 777, 855
BtgZI GCGATG 2 cut(s) 67, 595
BtsCI GGATG 2 cut(s) 787, 993
BtsIMutI CAGTG 4 cut(s) 195, 210, 831, 976
BtuMI TCGCGA 1 cut(s) 127
Cac8I GCNNGC 5 cut(s) 167, 542, 606, 978, 1047
CfoI GCGC 2 cut(s) 604, 1065
Cfr10I RCCGGY 2 cut(s) 145, 540
CseI GACGC 5 cut(s) 62, 496, 782, 856, 917
Csp6I GTAC 2 cut(s) 670, 925
CspAI ACCGGT 1 cut(s) 145
CviQI GTAC 2 cut(s) 670, 925
DdeI CTNAG 1 cut(s) 213
DpnI GATC 5 cut(s) 130, 209, 408, 440, 891
DpnII GATC 5 cut(s) 128, 207, 406, 438, 889
Eam1104I CTCTTC 2 cut(s) 96, 639
EarI CTCTTC 2 cut(s) 96, 639
EciI GGCGGA 3 cut(s) 49, 236, 527
Ecl136II GAGCTC 1 cut(s) 254
Eco147I AGGCCT 1 cut(s) 1049
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 491
Eco53kI GAGCTC 1 cut(s) 254
Eco57I CTGAAG 2 cut(s) 77, 778
Eco88I CYCGRG 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 1065
EcoT38I GRGCYC 1 cut(s) 256
FaiI YATR 4 cut(s) 221, 398, 437, 998
FalI AAGNNNNNCTT 4 cut(s) 648, 680, 1022, 1054
FauI CCCGC 1 cut(s) 127
FbaI TGATCA 1 cut(s) 438
FblI GTMKAC 2 cut(s) 160, 651
Fnu4HI GCNGC 7 cut(s) 73, 234, 237, 326, 917, 981, 1061
FokI GGATG 2 cut(s) 794, 1000
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 7 cut(s) 73, 234, 237, 326, 917, 981, 1061
FspBI CTAG 4 cut(s) 296, 965, 984, 1123
GlaI GCGC 2 cut(s) 603, 1064
GluI GCNGC 7 cut(s) 73, 234, 237, 326, 917, 981, 1061
HaeII RGCGCY 1 cut(s) 1066
HaeIII GGCC 4 cut(s) 370, 544, 608, 1049
HapII CCGG 7 cut(s) 146, 402, 541, 554, 869, 893, 1080
HgaI GACGC 5 cut(s) 62, 496, 782, 856, 917
HhaI GCGC 2 cut(s) 604, 1065
Hin1I GRCGYC 2 cut(s) 54, 774
Hin6I GCGC 2 cut(s) 602, 1063
HinP1I GCGC 2 cut(s) 602, 1063
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 709, 901, 959
HpaII CCGG 7 cut(s) 146, 402, 541, 554, 869, 893, 1080
HphI GGTGA 2 cut(s) 487, 1069
Hpy166II GTNNAC 4 cut(s) 161, 652, 672, 772
Hpy188I TCNGA 6 cut(s) 52, 289, 357, 700, 900, 939
Hpy188III TCNNGA 9 cut(s) 126, 173, 257, 376, 488, 569, 637, 844, 905
Hpy8I GTNNAC 4 cut(s) 161, 652, 672, 772
Hpy99I CGWCG 3 cut(s) 56, 512, 911
HpyAV CCTTC 5 cut(s) 88, 125, 292, 469, 806
HpyCH4III ACNGT 4 cut(s) 826, 856, 879, 935
HpyCH4V TGCA 2 cut(s) 955, 1007
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 175, 260, 417, 599
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 2 cut(s) 54, 774
HspAI GCGC 2 cut(s) 602, 1063
KroI GCCGGC 1 cut(s) 540
KroNI GCCGGC 1 cut(s) 542
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 5 cut(s) 128, 207, 406, 438, 889
LmnI GCTCC 3 cut(s) 80, 333, 355
Lsp1109I GCAGC 5 cut(s) 245, 337, 903, 967, 1072
LweI GCATC 1 cut(s) 337
MaeI CTAG 4 cut(s) 296, 965, 984, 1123
MaeIII GTNAC 2 cut(s) 139, 521
MalI GATC 5 cut(s) 130, 209, 408, 440, 891
MbiI CCGCTC 1 cut(s) 75
MboI GATC 5 cut(s) 128, 207, 406, 438, 889
MboII GAAGA 8 cut(s) 83, 205, 217, 350, 471, 656, 784, 1042
MflI RGATCY 1 cut(s) 889
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 5 cut(s) 13, 470, 491, 677, 818
MlyI GAGTC 1 cut(s) 968
MmeI TCCRAC 2 cut(s) 75, 723
MroNI GCCGGC 1 cut(s) 540
MseI TTAA 2 cut(s) 270, 693
MspI CCGG 7 cut(s) 146, 402, 541, 554, 869, 893, 1080
MspR9I CCNGG 2 cut(s) 403, 1067
MvaI CCWGG 1 cut(s) 1067
MvnI CGCG 3 cut(s) 127, 165, 411
MwoI GCNNNNNNNGC 5 cut(s) 162, 175, 260, 417, 599
NaeI GCCGGC 1 cut(s) 542
NciI CCSGG 1 cut(s) 403
NdeII GATC 5 cut(s) 128, 207, 406, 438, 889
NgoMIV GCCGGC 1 cut(s) 540
NlaIV GGNNCC 3 cut(s) 577, 891, 1108
NmeAIII GCCGAG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 139
NruI TCGCGA 1 cut(s) 127
PaeR7I CTCGAG 1 cut(s) 569
PceI AGGCCT 1 cut(s) 1049
PcsI WCGNNNNNNNCGW 2 cut(s) 169, 657
PdiI GCCGGC 1 cut(s) 542
PfeI GAWTC 2 cut(s) 709, 901
PflFI GACNNNGTC 1 cut(s) 656
PinAI ACCGGT 1 cut(s) 145
PkrI GCNGC 7 cut(s) 74, 235, 238, 327, 918, 982, 1062
Ple19I CGATCG 1 cut(s) 131
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
Psp124BI GAGCTC 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 1065
PspGI CCWGG 1 cut(s) 1065
PspN4I GGNNCC 3 cut(s) 577, 891, 1108
PsuI RGATCY 1 cut(s) 889
PsyI GACNNNGTC 1 cut(s) 656
PvuI CGATCG 1 cut(s) 131
RruI TCGCGA 1 cut(s) 127
RsaI GTAC 2 cut(s) 671, 926
RsaNI GTAC 2 cut(s) 670, 925
SacI GAGCTC 1 cut(s) 256
SalI GTCGAC 1 cut(s) 650
SaqAI TTAA 2 cut(s) 270, 693
SatI GCNGC 7 cut(s) 73, 234, 237, 326, 917, 981, 1061
Sau3AI GATC 5 cut(s) 128, 207, 406, 438, 889
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 2 cut(s) 403, 1067
SduI GDGCHC 1 cut(s) 256
SfaNI GCATC 1 cut(s) 337
Sfr274I CTCGAG 1 cut(s) 569
SlaI CTCGAG 1 cut(s) 569
SmlI CTYRAG 2 cut(s) 255, 569
SmoI CTYRAG 2 cut(s) 255, 569
Sse9I AATT 5 cut(s) 13, 470, 491, 677, 818
SseBI AGGCCT 1 cut(s) 1049
SspMI CTAG 4 cut(s) 296, 965, 984, 1123
SstI GAGCTC 1 cut(s) 256
StuI AGGCCT 1 cut(s) 1049
StyD4I CCNGG 2 cut(s) 401, 1065
TaaI ACNGT 4 cut(s) 826, 856, 879, 935
TaqI TCGA 7 cut(s) 11, 172, 489, 570, 651, 660, 906
TasI AATT 5 cut(s) 13, 470, 491, 677, 818
TatI WGTACW 1 cut(s) 669
TauI GCSGC 2 cut(s) 75, 239
TfiI GAWTC 2 cut(s) 709, 901
Tru1I TTAA 2 cut(s) 270, 693
Tru9I TTAA 2 cut(s) 270, 693
TscAI CASTG 4 cut(s) 195, 217, 831, 976
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 5 cut(s) 233, 325, 916, 980, 1060
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 70, 174, 236
TspRI CASTG 4 cut(s) 195, 217, 831, 976
Tth111I GACNNNGTC 1 cut(s) 656
XapI RAATTY 3 cut(s) 13, 491, 677
XhoI CTCGAG 1 cut(s) 569
XmiI GTMKAC 2 cut(s) 160, 651
XspI CTAG 4 cut(s) 296, 965, 984, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.