Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0019278

Physical Location & Seq

Genomic Coordinates Forward (+)

2282065 .. 2282549

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAATGAGATCAATGCAGCTGCAAGGCAGAGGTTGGCGGCGAAAGAAAAGGCTGAAGCGGAGAAAATCCTACAGATCAAGCGAGCGGAAGGAGAGGCGGAGGCCAAGTTCTTGGCAGGGCTTGGCATAGCGCGCCAGCGCCAGGCCATTGTTGACGGGCTGAGGGACAGCGTGCTTGTCTTCTCCGAGAATGTTCCCGGAACAACAGCCAAGGATGTCATGGACATGGTTTTGGTGACTCAATACTTCGACACCATGAAGGAGATTGGAGCATCCTCAAAGTCATCGTCTGTTTTCATCCCGCACGGGCCAGGCGCGATCAAGGACGTTGCTTCGCAGATTCGAGAGGGTCTCCTTCAAGCTGATCATGCCAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

127

Amino Acids

13.54

Weight (kDa)

6.74

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019278)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046800.v1.1
pyrus_communis	pycom111g03720 pycom111g03750 pycom13g06840 pycom16g06790
rosa_multiflora	Rmu_co8263667.1_g000001
rosa_rugosa	Rorug02G0537400
rosa_samantha	Rh2BG622100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	86
AccII	CGCG	2 cut(s)	133, 317
AciI	CCGC	5 cut(s)	38, 59, 86, 98, 302
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	359
AjnI	CCWGG	2 cut(s)	141, 310
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	2 cut(s)	20, 362
AluI	AGCT	2 cut(s)	20, 362
Alw26I	GTCTC	1 cut(s)	356
AoxI	GGCC	3 cut(s)	102, 144, 308
ApeKI	GCWGC	2 cut(s)	17, 20
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspLEI	GCGC	4 cut(s)	133, 135, 141, 317
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	172
BbvCI	CCTCAGC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	7, 29
BciT130I	CCWGG	2 cut(s)	143, 312
BclI	TGATCA	1 cut(s)	364
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	3 cut(s)	18, 21, 39
BlsI	GCNGC	3 cut(s)	19, 22, 40
Bme1390I	CCNGG	3 cut(s)	143, 198, 312
BmgT120I	GGNCC	1 cut(s)	308
BmrFI	CCNGG	3 cut(s)	143, 198, 312
BmsI	GCATC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	172
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
Bpu10I	CCTNAGC	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	210, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	143, 312
BseDI	CCNNGG	2 cut(s)	210, 372
BseGI	GGATG	3 cut(s)	220, 272, 297
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	152
BsePI	GCGCGC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	7, 29
Bsh1236I	CGCG	2 cut(s)	133, 317
BshFI	GGCC	3 cut(s)	104, 146, 310
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	356
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	104, 146, 310
Bso31I	GGTCTC	1 cut(s)	356
Bsp143I	GATC	4 cut(s)	9, 75, 318, 364
BspACI	CCGC	5 cut(s)	38, 59, 86, 98, 302
BspANI	GGCC	3 cut(s)	104, 146, 310
BspCNI	CTCAG	1 cut(s)	153
BspFNI	CGCG	2 cut(s)	133, 317
BspTNI	GGTCTC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	210, 372
BssHII	GCGCGC	1 cut(s)	131
BssMI	GATC	4 cut(s)	9, 75, 318, 364
BssT1I	CCWWGG	2 cut(s)	210, 372
Bst2UI	CCWGG	2 cut(s)	143, 312
BstC8I	GCNNGC	4 cut(s)	84, 133, 137, 173
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	220, 272, 297
BstFNI	CGCG	2 cut(s)	133, 317
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	4 cut(s)	133, 135, 141, 317
BstKTI	GATC	4 cut(s)	12, 78, 321, 367
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	4 cut(s)	9, 75, 318, 364
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 368
BstNI	CCWGG	2 cut(s)	143, 312
BstSCI	CCNGG	3 cut(s)	141, 196, 310
BstSFI	CTRYAG	1 cut(s)	71
BstUI	CGCG	2 cut(s)	133, 317
BstV1I	GCAGC	2 cut(s)	7, 29
BstV2I	GAAGAC	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	104, 146, 310
BtsCI	GGATG	3 cut(s)	220, 272, 297
Cac8I	GCNNGC	4 cut(s)	84, 133, 137, 173
CfoI	GCGC	4 cut(s)	133, 135, 141, 317
Cfr13I	GGNCC	1 cut(s)	308
CviAII	CATG	4 cut(s)	220, 226, 256, 368
CviJI	RGCY	9 cut(s)	20, 53, 104, 121, 146, 160, 209, 310, 362
CviKI_1	RGCY	9 cut(s)	20, 53, 104, 121, 146, 160, 209, 310, 362
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	4 cut(s)	11, 77, 320, 366
DpnII	GATC	4 cut(s)	9, 75, 318, 364
EciI	GGCGGA	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	210, 372
Eco31I	GGTCTC	1 cut(s)	356
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	141, 310
EcoT14I	CCWWGG	2 cut(s)	210, 372
ErhI	CCWWGG	2 cut(s)	210, 372
FaeI	CATG	4 cut(s)	223, 229, 259, 371
FaiI	YATR	6 cut(s)	128, 221, 227, 257, 369, 379
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	4 cut(s)	219, 225, 255, 367
FauI	CCCGC	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	3 cut(s)	18, 21, 39
FokI	GGATG	3 cut(s)	227, 259, 284
Fsp4HI	GCNGC	3 cut(s)	18, 21, 39
GlaI	GCGC	4 cut(s)	132, 134, 140, 316
GluI	GCNGC	3 cut(s)	18, 21, 39
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	104, 146, 310
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	4 cut(s)	133, 135, 141, 317
Hin1II	CATG	4 cut(s)	223, 229, 259, 371
Hin6I	GCGC	4 cut(s)	131, 133, 139, 315
HinP1I	GCGC	4 cut(s)	131, 133, 139, 315
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	238, 340
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	344
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	83, 253, 365
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	17, 23
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 368
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	4 cut(s)	223, 229, 259, 371
HspAI	GCGC	4 cut(s)	131, 133, 139, 315
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	9, 75, 318, 364
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	7 cut(s)	102, 128, 149, 155, 211, 297, 324
Lsp1109I	GCAGC	2 cut(s)	7, 29
LweI	GCATC	1 cut(s)	281
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	4 cut(s)	11, 77, 320, 366
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	4 cut(s)	9, 75, 318, 364
MboII	GAAGA	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	24, 88, 94, 156, 286, 340
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	143, 198, 312
MvaI	CCWGG	2 cut(s)	143, 312
MvnI	CGCG	2 cut(s)	133, 317
MwoI	GCNNNNNNNGC	2 cut(s)	132, 368
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	4 cut(s)	9, 75, 318, 364
NlaIII	CATG	4 cut(s)	223, 229, 259, 371
NmuCI	GTSAC	1 cut(s)	235
PauI	GCGCGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	3 cut(s)	19, 22, 40
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	141, 310
PspGI	CCWGG	2 cut(s)	141, 310
PspPI	GGNCC	1 cut(s)	308
PteI	GCGCGC	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	224
SatI	GCNGC	3 cut(s)	18, 21, 39
Sau3AI	GATC	4 cut(s)	9, 75, 318, 364
Sau96I	GGNCC	1 cut(s)	308
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	3 cut(s)	143, 198, 312
SetI	ASST	4 cut(s)	22, 35, 330, 364
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	224
SsiI	CCGC	5 cut(s)	38, 59, 86, 98, 302
StyD4I	CCNGG	3 cut(s)	141, 196, 310
StyI	CCWWGG	2 cut(s)	210, 372
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	249, 343
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	17, 20
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	17, 272, 286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.