Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0019278

Physical Location & Seq

Genomic Coordinates Reverse (-)

66672938 .. 66674202

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0537400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAAGTAATAAAGGGTGATTGTAACTTGGTGGACCGAATCAGTGCGTTGCCTGATGAACTTGTATGTATTATAGTCTCTCCCTTGCCCTTCAAGGAAGCATTTGCGACTAGTATTCTTTATAGGCGATGGAAAAATATATGGAAGTGTAGGGCGAATCTCGACTTTTCTGGTGCTATATTTGATGTTGGTGAAGGCCGGGTTCGCTTTTATATAGATTACCCGTTTACGAATGACATTGATAGATGGGTTCGTTTTGCTATGAATAAGAGTGTTCAAATTCTGGAGTTGGAGTTTTACACAGACTCCGGTTCTATGCTTGAAACTATGTATCCGTTTCCCCACAACCTATTAGTTCTTGAACGATCGACTGTGAATGCTGCTAACAATTTGGAGGGTCTAAGAGTTGTTGGTTCCTCAATTGCTTTGAAGCATTTAGTGTTAATAGATTGTTTTCTCCTTGACGTACAGCATCGAGATGGGGTGGACTACAATTGGAATCATGTATTTCCTAGACTTGCGAATCTCAAGCATTTGGAACTAAAAATAGAGGCGGATTGTGTGTCTGATCATTATATTTTAACTCGATTCATGAAGTCATCTCCTAACTTGCAGAGGCCTGTGTTGAAGTTGGATAAGTTAACGTATATAAGCCCAGAAGAAAGGAAAATAGGGAACAATGCCAACTTCCCCCGTCATTACCTCAAGGTGGTAGAGATAGTAGGGTATCGTGGTAGTGATTGTCATGTTAATGCTGTTGCACTGAAGAAAATTATTATTGATCCTGTTCGTCGTTGGTGTTGTTGGCCCACGGAAGGGGATGGGGGTTTTGAAGAAGTTAAAAGGGAAAGGATGGCAAGAAATCATGCTAAGAAACACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

294

Amino Acids

34.07

Weight (kDa)

8.7

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	14 - 49	4.6e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019278)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046800.v1.1
pyrus_communis	pycom111g03720 pycom111g03750 pycom13g06840 pycom16g06790
rosa_multiflora	Rmu_co8263667.1_g000001
rosa_rugosa	Rorug02G0537400
rosa_samantha	Rh2BG622100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	1 cut(s)	468
AfiI	CCNNNNNNNGG	3 cut(s)	709, 815, 816
AgsI	TTSAA	7 cut(s)	94, 278, 323, 362, 430, 628, 833
AhlI	ACTAGT	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	776
AoxI	GGCC	3 cut(s)	196, 617, 806
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	34, 807
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	29, 203
AvaII	GGWCC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	5 cut(s)	123, 240, 473, 815, 847
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	82
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	2 cut(s)	111, 513
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 807
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	305
BpuEI	CTTGAG	2 cut(s)	512, 689
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	810
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	4 cut(s)	278, 290, 308, 320
Bsc4I	CCNNNNNNNGG	3 cut(s)	709, 815, 816
BseDI	CCNNGG	1 cut(s)	810
BseGI	GGATG	2 cut(s)	826, 858
BseLI	CCNNNNNNNGG	3 cut(s)	709, 815, 816
BseXI	GCAGC	1 cut(s)	367
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	198, 619, 808
BsiEI	CGRYCG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	199, 309
BslI	CCNNNNNNNGG	3 cut(s)	709, 815, 816
BsmAI	GTCTC	1 cut(s)	82
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	198, 619, 808
Bsp143I	GATC	3 cut(s)	365, 568, 781
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	3 cut(s)	198, 619, 808
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	415
BspPI	GGATC	1 cut(s)	776
BssECI	CCNNGG	1 cut(s)	810
BssMI	GATC	3 cut(s)	365, 568, 781
Bst4CI	ACNGT	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	401, 870
BstDSI	CCRYGG	1 cut(s)	810
BstF5I	GGATG	2 cut(s)	826, 858
BstKTI	GATC	3 cut(s)	368, 571, 784
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	3 cut(s)	365, 568, 781
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	367
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	198, 619, 808
BtgI	CCRYGG	1 cut(s)	810
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	826, 858
BtsIMutI	CAGTG	2 cut(s)	49, 761
CciI	TCATGA	1 cut(s)	591
Cfr13I	GGNCC	2 cut(s)	34, 807
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	4 cut(s)	503, 592, 746, 866
CviJI	RGCY	4 cut(s)	198, 619, 654, 808
CviKI_1	RGCY	4 cut(s)	198, 619, 654, 808
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	2 cut(s)	401, 870
DpnI	GATC	3 cut(s)	367, 570, 783
DpnII	GATC	3 cut(s)	365, 568, 781
EciI	GGCGGA	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	785
FaeI	CATG	4 cut(s)	506, 595, 749, 869
FatI	CATG	4 cut(s)	502, 591, 745, 865
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	833, 865
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	2 cut(s)	111, 513
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	3 cut(s)	198, 619, 808
HapII	CCGG	2 cut(s)	199, 309
Hin1II	CATG	4 cut(s)	506, 595, 749, 869
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	6 cut(s)	39, 157, 305, 499, 523, 588
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	2 cut(s)	199, 309
HphI	GGTGA	2 cut(s)	29, 203
Hpy166II	GTNNAC	4 cut(s)	34, 228, 487, 642
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	5 cut(s)	161, 284, 359, 476, 592
Hpy8I	GTNNAC	4 cut(s)	34, 228, 487, 642
Hpy99I	CGWCG	1 cut(s)	795
HpyAV	CCTTC	3 cut(s)	100, 188, 809
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4IV	ACGT	2 cut(s)	465, 644
HpyCH4V	TGCA	2 cut(s)	613, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	2 cut(s)	401, 870
HpySE526I	ACGT	2 cut(s)	465, 644
Hsp92II	CATG	4 cut(s)	506, 595, 749, 869
Ksp22I	TGATCA	1 cut(s)	568
KspAI	GTTAAC	1 cut(s)	642
Kzo9I	GATC	3 cut(s)	365, 568, 781
LpnPI	CCDG	8 cut(s)	66, 156, 212, 269, 322, 633, 669, 798
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	2 cut(s)	111, 513
MaeII	ACGT	2 cut(s)	465, 644
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	3 cut(s)	367, 570, 783
MboI	GATC	3 cut(s)	365, 568, 781
MboII	GAAGA	3 cut(s)	671, 778, 845
MfeI	CAATTG	2 cut(s)	420, 493
MluCI	AATT	5 cut(s)	279, 388, 420, 493, 771
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	270, 612
MnlI	CCTC	5 cut(s)	388, 427, 544, 609, 713
MseI	TTAA	6 cut(s)	443, 581, 641, 750, 840, 883
MslI	CAYNNNNRTG	2 cut(s)	477, 750
MspI	CCGG	2 cut(s)	199, 309
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	2 cut(s)	420, 493
Mva1269I	GAATGC	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	365, 568, 781
NlaIII	CATG	4 cut(s)	506, 595, 749, 869
NlaIV	GGNNCC	1 cut(s)	415
PagI	TCATGA	1 cut(s)	591
PceI	AGGCCT	1 cut(s)	619
PctI	GAATGC	1 cut(s)	382
PfeI	GAWTC	5 cut(s)	39, 157, 499, 523, 588
PkrI	GCNGC	1 cut(s)	382
Ple19I	CGATCG	1 cut(s)	368
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	34, 807
PvuI	CGATCG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	2 cut(s)	477, 750
SaqAI	TTAA	6 cut(s)	443, 581, 641, 750, 840, 883
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	3 cut(s)	365, 568, 781
Sau96I	GGNCC	2 cut(s)	34, 807
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	6 cut(s)	351, 468, 647, 705, 711, 882
SfaNI	GCATC	1 cut(s)	481
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	477, 750
SmlI	CTYRAG	2 cut(s)	527, 704
SmoI	CTYRAG	2 cut(s)	527, 704
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	5 cut(s)	279, 388, 420, 493, 771
SseBI	AGGCCT	1 cut(s)	619
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	2 cut(s)	111, 513
StuI	AGGCCT	1 cut(s)	619
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	373
TaiI	ACGT	2 cut(s)	468, 647
TaqI	TCGA	4 cut(s)	162, 368, 475, 586
TaqII	GACCGA	1 cut(s)	51
TasI	AATT	5 cut(s)	279, 388, 420, 493, 771
TfiI	GAWTC	5 cut(s)	39, 157, 499, 523, 588
Tru1I	TTAA	6 cut(s)	443, 581, 641, 750, 840, 883
Tru9I	TTAA	6 cut(s)	443, 581, 641, 750, 840, 883
TscAI	CASTG	2 cut(s)	49, 768
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	5 cut(s)	17, 72, 278, 580, 608
TspGWI	ACGGA	2 cut(s)	324, 827
TspRI	CASTG	2 cut(s)	49, 768
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	279
XspI	CTAG	2 cut(s)	111, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.