Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0019278

Physical Location & Seq

Genomic Coordinates Forward (+)

2289245 .. 2290028

Gene Structure 784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTCAGCTAAATACCTAAATAATTCACAAACAATTTTACAAGAACCAGCAGCAGTTTTAGCTTTAAAAGGTAAAGTCCGTATAACTCTGTCTGCCGTTTGGTTGCTCAGAAAATGTGAGTCCATTTTGGTGAGAGACAGTGTGCTTGTCTTCTCCGAAAATGTTCCCGGATCAACGGCCAAGGATGTCATGAACATGGTTTTGGTGACTCAATACTTCGACACCATGAAGGAGATTGGAGCATCCTCAAAGTCAGCATCTGTTTTCATCCCGCACGGGCCAGGTGCGATCAAGGATGTTGCTTCGCAGATTCGAGAGGATCTCCCTCAAGCTGATTATGCTAAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

117

Amino Acids

12.58

Weight (kDa)

8.76

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019278)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046800.v1.1
pyrus_communis	pycom111g03720 pycom111g03750 pycom13g06840 pycom16g06790
rosa_multiflora	Rmu_co8263667.1_g000001
rosa_rugosa	Rorug02G0537400
rosa_samantha	Rh2BG622100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	178, 327
AcoI	YGGCCR	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	3 cut(s)	8, 62, 332
AluI	AGCT	3 cut(s)	8, 62, 332
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	178, 327
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	177, 278
ApeKI	GCWGC	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	2 cut(s)	142, 217
BbsI	GAAGAC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	80, 192
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	129
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	168, 282
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	2 cut(s)	168, 282
BmsI	GCATC	2 cut(s)	251, 266
BpiI	GAAGAC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	4 cut(s)	190, 242, 267, 301
BseMII	CTCAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	2 cut(s)	179, 280
BsiSI	CCGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	179, 280
Bsp143I	GATC	3 cut(s)	170, 288, 319
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	2 cut(s)	179, 280
BspCNI	CTCAG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	189
BspPI	GGATC	2 cut(s)	178, 327
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	170, 288, 319
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	140
BstDEI	CTNAG	2 cut(s)	107, 342
BstF5I	GGATG	4 cut(s)	190, 242, 267, 301
BstKTI	GATC	3 cut(s)	173, 291, 322
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	3 cut(s)	170, 288, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 338
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	166, 280
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	179, 280
BtsCI	GGATG	4 cut(s)	190, 242, 267, 301
BtsIMutI	CAGTG	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	260
CciI	TCATGA	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	278
CviAII	CATG	3 cut(s)	190, 196, 226
CviJI	RGCY	5 cut(s)	8, 62, 179, 280, 332
CviKI_1	RGCY	5 cut(s)	8, 62, 179, 280, 332
DdeI	CTNAG	2 cut(s)	107, 342
DpnI	GATC	3 cut(s)	172, 290, 321
DpnII	GATC	3 cut(s)	170, 288, 319
DraI	TTTAAA	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	193, 199, 229
FaiI	YATR	6 cut(s)	83, 191, 197, 227, 339, 349
FatI	CATG	3 cut(s)	189, 195, 225
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	4 cut(s)	197, 229, 254, 308
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	179, 280
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	3 cut(s)	193, 199, 229
HinfI	GANTC	3 cut(s)	119, 208, 310
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	142, 217
Hpy188I	TCNGA	2 cut(s)	110, 157
Hpy188III	TCNNGA	2 cut(s)	190, 314
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 338
HpyF3I	CTNAG	2 cut(s)	107, 342
Hsp92II	CATG	3 cut(s)	193, 199, 229
Kzo9I	GATC	3 cut(s)	170, 288, 319
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	4 cut(s)	60, 181, 267, 294
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	2 cut(s)	251, 266
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	3 cut(s)	172, 290, 321
MboI	GATC	3 cut(s)	170, 288, 319
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	2 cut(s)	22, 33
MlyI	GAGTC	2 cut(s)	128, 202
MnlI	CCTC	3 cut(s)	256, 310, 336
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	2 cut(s)	128, 194
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	168, 282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	59, 338
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	170, 288, 319
NlaIII	CATG	3 cut(s)	193, 199, 229
NmuCI	GTSAC	1 cut(s)	205
PagI	TCATGA	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	2 cut(s)	127, 202
PpsI	GAGTC	2 cut(s)	127, 202
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	319
RseI	CAYNNNNRTG	2 cut(s)	128, 194
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	170, 288, 319
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	128, 202
ScrFI	CCNGG	2 cut(s)	168, 282
SetI	ASST	6 cut(s)	10, 18, 64, 73, 286, 334
SfaNI	GCATC	2 cut(s)	251, 266
SmiMI	CAYNNNNRTG	2 cut(s)	128, 194
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	2 cut(s)	22, 33
SsiI	CCGC	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	166, 280
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	219, 313
TasI	AATT	2 cut(s)	22, 33
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	3 cut(s)	206, 242, 256
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	145
XmnI	GAANNNNTTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.