Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019278

Physical Location & Seq

Genomic Coordinates Reverse (-)

84455215 .. 84455883

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG622100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCTGCTTATGGTTTCGAAATAGTCCAGACCCTTATTGTTGATATTGTGCCTGATGATCGTGTCAAGAGAGCGATGAATGAGATCAATGCAGCTGCAAGACTGAGGGTTGCTGCAATGGAAAAGGCTGAAGCAGAAAAAATTTTACAGGTCAAGAGAGCTGAAGCAGAAGCAGAGTCCAAGTACTTAGCAGGGCTTGGAATAGCTCGCCAGCGCCAGGCCATTGTTGACGGGCTGAGAAATAGTGTTGTTCTATTCTCTGAAAATGTTCCTGGAGCATCAGCCAAGGATGTCATGGACATGGTTCTACTGACTCAATACTTTGACACCATGAAGGAGATCGGAGCATTATCAAAGTCATCATGCGTTTTCATCCCCCACGGGCCAGGTGCTGTGAGAGACGTTGCTTCGCAGATTCAAGAGGGTCTCCTTCAACCCGATTCTGCTCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

151

Amino Acids

16.38

Weight (kDa)

5.22

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019278)

Species	Orthologous Gene IDs
malus_domestica	MD09G1046800.v1.1
pyrus_communis	pycom111g03720 pycom111g03750 pycom13g06840 pycom16g06790
rosa_multiflora	Rmu_co8263667.1_g000001
rosa_rugosa	Rorug02G0537400
rosa_samantha	Rh2BG622100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	141
AcuI	CTGAAG	2 cut(s)	150, 183
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	419, 434
AjnI	CCWGG	3 cut(s)	216, 271, 385
AluBI	AGCT	3 cut(s)	95, 161, 206
AluI	AGCT	3 cut(s)	95, 161, 206
Alw26I	GTCTC	2 cut(s)	393, 431
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	219, 383
ApeKI	GCWGC	3 cut(s)	92, 95, 113
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	82, 100, 104
BciT130I	CCWGG	3 cut(s)	218, 273, 387
BcoDI	GTCTC	2 cut(s)	393, 431
BfoI	RGCGCY	1 cut(s)	217
BisI	GCNGC	3 cut(s)	93, 96, 114
BlsI	GCNGC	3 cut(s)	94, 97, 115
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	3 cut(s)	218, 273, 387
BmgT120I	GGNCC	1 cut(s)	383
BmrFI	CCNGG	3 cut(s)	218, 273, 387
BmsI	GCATC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	285, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	3 cut(s)	218, 273, 387
BseDI	CCNNGG	2 cut(s)	285, 379
BseGI	GGATG	2 cut(s)	295, 372
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	95, 227
BseXI	GCAGC	3 cut(s)	82, 100, 104
BshFI	GGCC	2 cut(s)	221, 385
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	393, 431
BsmBI	CGTCTC	1 cut(s)	393
BsnI	GGCC	2 cut(s)	221, 385
Bso31I	GGTCTC	1 cut(s)	431
Bsp119I	TTCGAA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	58, 84, 339
BspANI	GGCC	2 cut(s)	221, 385
BspCNI	CTCAG	2 cut(s)	96, 228
BspT104I	TTCGAA	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	285, 379
BssMI	GATC	3 cut(s)	58, 84, 339
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	3 cut(s)	218, 273, 387
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	2 cut(s)	208, 212
BstDEI	CTNAG	3 cut(s)	104, 187, 236
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	295, 372
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	3 cut(s)	61, 87, 342
BstMAI	GTCTC	2 cut(s)	393, 431
BstMBI	GATC	3 cut(s)	58, 84, 339
BstNI	CCWGG	3 cut(s)	218, 273, 387
BstSCI	CCNGG	3 cut(s)	216, 271, 385
BstV1I	GCAGC	3 cut(s)	82, 100, 104
BsuRI	GGCC	2 cut(s)	221, 385
BtgI	CCRYGG	1 cut(s)	379
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	295, 372
Cac8I	GCNNGC	2 cut(s)	208, 212
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	4 cut(s)	295, 301, 331, 363
CviJI	RGCY	9 cut(s)	95, 128, 161, 196, 206, 221, 235, 284, 385
CviKI_1	RGCY	9 cut(s)	95, 128, 161, 196, 206, 221, 235, 284, 385
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	3 cut(s)	104, 187, 236
DpnI	GATC	3 cut(s)	60, 86, 341
DpnII	GATC	3 cut(s)	58, 84, 339
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	431
Eco57I	CTGAAG	2 cut(s)	150, 183
EcoRII	CCWGG	3 cut(s)	216, 271, 385
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	4 cut(s)	298, 304, 334, 366
FaiI	YATR	5 cut(s)	12, 296, 302, 332, 364
FatI	CATG	4 cut(s)	294, 300, 330, 362
Fnu4HI	GCNGC	3 cut(s)	93, 96, 114
FokI	GGATG	2 cut(s)	302, 359
Fsp4HI	GCNGC	3 cut(s)	93, 96, 114
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	93, 96, 114
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	217
HaeIII	GGCC	2 cut(s)	221, 385
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	298, 304, 334, 366
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	4 cut(s)	176, 313, 415, 440
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	2 cut(s)	262, 344
Hpy188III	TCNNGA	4 cut(s)	28, 67, 154, 419
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	328, 440
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	92, 98, 116
HpyF3I	CTNAG	3 cut(s)	104, 187, 236
HpySE526I	ACGT	1 cut(s)	402
Hsp92II	CATG	4 cut(s)	298, 304, 334, 366
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	58, 84, 339
LmnI	GCTCC	2 cut(s)	275, 344
Lsp1109I	GCAGC	3 cut(s)	82, 100, 104
LweI	GCATC	1 cut(s)	287
MaeII	ACGT	1 cut(s)	402
MalI	GATC	3 cut(s)	60, 86, 341
MboI	GATC	3 cut(s)	58, 84, 339
MluCI	AATT	2 cut(s)	141, 451
MlyI	GAGTC	2 cut(s)	185, 307
MnlI	CCTC	2 cut(s)	99, 415
MroXI	GAANNNNTTC	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	218, 273, 387
MvaI	CCWGG	3 cut(s)	218, 273, 387
NdeII	GATC	3 cut(s)	58, 84, 339
NlaIII	CATG	4 cut(s)	298, 304, 334, 366
NspV	TTCGAA	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	415, 440
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	94, 97, 115
PleI	GAGTC	2 cut(s)	184, 307
PpsI	GAGTC	2 cut(s)	184, 307
Psp6I	CCWGG	3 cut(s)	216, 271, 385
PspGI	CCWGG	3 cut(s)	216, 271, 385
PspPI	GGNCC	1 cut(s)	383
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	299
SatI	GCNGC	3 cut(s)	93, 96, 114
Sau3AI	GATC	3 cut(s)	58, 84, 339
Sau96I	GGNCC	1 cut(s)	383
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	2 cut(s)	185, 307
ScrFI	CCNGG	3 cut(s)	218, 273, 387
SetI	ASST	6 cut(s)	97, 153, 163, 208, 391, 405
SfaNI	GCATC	1 cut(s)	287
SfuI	TTCGAA	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	141, 451
StyD4I	CCNGG	3 cut(s)	216, 271, 385
StyI	CCWWGG	1 cut(s)	285
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	141, 451
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	415, 440
TseI	GCWGC	3 cut(s)	92, 95, 113
TspDTI	ATGAA	3 cut(s)	92, 347, 361
XapI	RAATTY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.