pycom13g06840

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0019278
Physical Location & Seq
Reverse (-)
4521534 .. 4522224
691 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06840.2

Sequence Viewer

Length: 375 bp
ATGAATGAGATAAATGCAGCTGCTAGGATGAGGCTGGCTGCAACTGAGAAAGCTGAAGCGGAGAAGATACTACAGATTAAGCGAGCTGAGGGAGAGGCGGAGTCCAAGTATCTGTCGGGGCTCGGCATAGCAAGGCAGCGCCAGGCCATTGTGGACGGGCTGAGAGACAGTGTGCTGGCCTTCTCTGAGAACGTACCCGGGACATCATCCAAGGATGTCATGGACATGGTTCTGGTGACCCAGTACTTCGACACATTGAAGGACATTGGTGCGTCCTCAAAGTCCAACTCGGTTTTCATCCCACACGGACCCGGTGCTGTGAAAGATATCTCTTCACAGATAAGGGACGGCCTCCTTCAAGGAAGTCAGGTGTAA

Protein Analysis

125

Amino Acids

13.31

Weight (kDa)

5.82

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019278)

Species Orthologous Gene IDs
malus_domestica MD09G1046800.v1.1
pyrus_communis pycom111g03720 pycom111g03750 pycom13g06840 pycom16g06790
rosa_multiflora Rmu_co8263667.1_g000001
rosa_rugosa Rorug02G0537400
rosa_samantha Rh2BG622100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 98
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 195, 245
AgsI TTSAA 2 cut(s) 259, 359
AjnI CCWGG 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 20, 53, 86
AluI AGCT 3 cut(s) 20, 53, 86
Alw26I GTCTC 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 3 cut(s) 144, 177, 349
ApeKI GCWGC 4 cut(s) 17, 20, 38, 136
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 3 cut(s) 198, 199, 312
AsuHPI GGTGA 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 7, 25, 29, 148
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 3 cut(s) 198, 199, 312
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 4 cut(s) 18, 21, 39, 137
BlsI GCNGC 4 cut(s) 19, 22, 40, 138
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 4 cut(s) 143, 198, 199, 312
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 4 cut(s) 143, 198, 199, 312
BmrI ACTGGG 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 87
BpuMI CCSGG 3 cut(s) 198, 199, 312
BsaJI CCNNGG 2 cut(s) 197, 210
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 197, 210
BseGI GGATG 4 cut(s) 33, 206, 220, 297
BseMII CTCAG 4 cut(s) 36, 78, 152, 177
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 4 cut(s) 7, 25, 29, 148
BshFI GGCC 3 cut(s) 146, 179, 351
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 2 cut(s) 198, 312
BslFI GGGAC 2 cut(s) 214, 359
BsmAI GTCTC 1 cut(s) 159
BsmFI GGGAC 2 cut(s) 214, 359
BsnI GGCC 3 cut(s) 146, 179, 351
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 123
BspACI CCGC 2 cut(s) 59, 98
BspANI GGCC 3 cut(s) 146, 179, 351
BspCNI CTCAG 4 cut(s) 37, 79, 153, 178
BspLI GGNNCC 1 cut(s) 310
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 197, 210
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 337
BstC8I GCNNGC 3 cut(s) 36, 84, 177
BstDEI CTNAG 4 cut(s) 45, 87, 161, 186
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 4 cut(s) 33, 206, 220, 297
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 143
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 4 cut(s) 141, 196, 197, 310
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 7, 25, 29, 148
BsuRI GGCC 3 cut(s) 146, 179, 351
BtsCI GGATG 4 cut(s) 33, 206, 220, 297
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 36, 84, 177
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 308
Cfr9I CCCGGG 1 cut(s) 197
CseI GACGC 1 cut(s) 261
Csp6I GTAC 2 cut(s) 194, 244
CviAII CATG 2 cut(s) 220, 226
CviQI GTAC 2 cut(s) 194, 244
DdeI CTNAG 4 cut(s) 45, 87, 161, 186
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 123
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 197
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 141
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 223, 229
FaiI YATR 3 cut(s) 128, 221, 227
FaqI GGGAC 2 cut(s) 214, 359
FatI CATG 2 cut(s) 219, 225
Fnu4HI GCNGC 4 cut(s) 18, 21, 39, 137
FokI GGATG 4 cut(s) 40, 193, 227, 284
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 18, 21, 39, 137
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 18, 21, 39, 137
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 3 cut(s) 146, 179, 351
HapII CCGG 2 cut(s) 198, 312
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 223, 229
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 198, 312
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 190, 253, 365
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 17, 41
HpyF3I CTNAG 4 cut(s) 45, 87, 161, 186
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 2 cut(s) 223, 229
HspAI GCGC 1 cut(s) 139
LpnPI CCDG 9 cut(s) 20, 128, 155, 161, 211, 218, 254, 325, 353
Lsp1109I GCAGC 4 cut(s) 7, 25, 29, 148
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 2 cut(s) 76, 324
MhlI GDGCHC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 24, 82, 88, 286, 362
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 20
MspI CCGG 2 cut(s) 198, 312
MspR9I CCNGG 4 cut(s) 143, 198, 199, 312
MvaI CCWGG 1 cut(s) 143
NciI CCSGG 3 cut(s) 198, 199, 312
NlaIII CATG 2 cut(s) 223, 229
NlaIV GGNNCC 1 cut(s) 310
NmeAIII GCCGAG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 235
PkrI GCNGC 4 cut(s) 19, 22, 40, 138
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 310
PspPI GGNCC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 195, 245
RsaNI GTAC 2 cut(s) 194, 244
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 4 cut(s) 18, 21, 39, 137
Sau96I GGNCC 1 cut(s) 308
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 4 cut(s) 143, 198, 199, 312
SduI GDGCHC 1 cut(s) 123
SetI ASST 5 cut(s) 22, 55, 88, 195, 372
SfcI CTRYAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 224
SsiI CCGC 2 cut(s) 59, 98
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 4 cut(s) 141, 196, 197, 310
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 249
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 17, 20, 38, 136
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 17, 286
TspGWI ACGGA 1 cut(s) 321
TspMI CCCGGG 1 cut(s) 197
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmaI CCCGGG 1 cut(s) 197
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.