pycom16g06790

Hypersensitive-induced response protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0019278
Physical Location & Seq
Reverse (-)
4389608 .. 4390591
984 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06790.1

Sequence Viewer

Length: 381 bp
ATGAATGAGATTAATGCAGCTGCTAGGATGAGGGTGGCTGCAAGTGAGAAAGCTGAAGCAGAGAAGATACTACAGATTAAGCGAGCTGAGGGAGAAGCAGAGTCCAAATATCTGTCGGGGCTTGGCATAGCAAGGCAGCGCCAGGCCATTGTGGACGGGCTGAGAGACAGTGTGCTGGCCTTCTCTGAGAACGTACCTGGGACAACATCCAAGGATGTCATGGACATGGTTCTCGTGACCCAGTACTTTGACACAATGAAGGAGATTGGTGCATCCTCAAAGTCCAATTCGGTTTTCATCCCACACGGACCAGGTGCTGTGAGAGACATTGCGTCGCAGATAAGAGACGGACTCCTTCAAGGAAGTTCGATCCAGGAGTAA

Protein Analysis

127

Amino Acids

13.57

Weight (kDa)

5.48

Isoelectric Point (pI)

30.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019278)

Species Orthologous Gene IDs
malus_domestica MD09G1046800.v1.1
pyrus_communis pycom111g03720 pycom111g03750 pycom13g06840 pycom16g06790
rosa_multiflora Rmu_co8263667.1_g000001
rosa_rugosa Rorug02G0537400
rosa_samantha Rh2BG622100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 195, 245
AgsI TTSAA 1 cut(s) 359
AhdI GACNNNNNGTC 1 cut(s) 331
AjnI CCWGG 4 cut(s) 141, 196, 310, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 20, 53, 86
AluI AGCT 3 cut(s) 20, 53, 86
Alw26I GTCTC 3 cut(s) 159, 318, 339
AlwI GGATC 1 cut(s) 364
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 144, 177
ApeKI GCWGC 4 cut(s) 17, 20, 38, 136
AseI ATTAAT 1 cut(s) 12
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 308
AvaII GGWCC 1 cut(s) 308
BauI CACGAG 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 7, 25, 29, 148
BciT130I CCWGG 4 cut(s) 143, 198, 312, 374
BcoDI GTCTC 3 cut(s) 159, 318, 339
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 4 cut(s) 18, 21, 39, 137
BlsI GCNGC 4 cut(s) 19, 22, 40, 138
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 4 cut(s) 143, 198, 312, 374
Bme18I GGWCC 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 308
BmrFI CCNGG 4 cut(s) 143, 198, 312, 374
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 281
BmuI ACTGGG 1 cut(s) 235
BplI GAGNNNNNCTC 2 cut(s) 336, 368
Bpu10I CCTNAGC 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 197, 210
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 4 cut(s) 143, 198, 312, 374
BseDI CCNNGG 2 cut(s) 197, 210
BseGI GGATG 5 cut(s) 33, 206, 220, 272, 297
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 3 cut(s) 78, 152, 177
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 4 cut(s) 7, 25, 29, 148
BshFI GGCC 2 cut(s) 146, 179
BslFI GGGAC 1 cut(s) 214
BsmAI GTCTC 3 cut(s) 159, 318, 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 2 cut(s) 146, 179
Bsp143I GATC 1 cut(s) 369
BspANI GGCC 2 cut(s) 146, 179
BspCNI CTCAG 3 cut(s) 79, 153, 178
BspPI GGATC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 2 cut(s) 197, 210
BssMI GATC 1 cut(s) 369
BssSI CACGAG 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 233
Bst2UI CCWGG 4 cut(s) 143, 198, 312, 374
Bst4CI ACNGT 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 84, 177
BstDEI CTNAG 3 cut(s) 87, 161, 186
BstF5I GGATG 5 cut(s) 33, 206, 220, 272, 297
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 3 cut(s) 159, 318, 339
BstMBI GATC 1 cut(s) 369
BstNI CCWGG 4 cut(s) 143, 198, 312, 374
BstSCI CCNGG 4 cut(s) 141, 196, 310, 372
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 4 cut(s) 7, 25, 29, 148
BsuRI GGCC 2 cut(s) 146, 179
BtsCI GGATG 5 cut(s) 33, 206, 220, 272, 297
BtsIMutI CAGTG 1 cut(s) 175
Cac8I GCNNGC 2 cut(s) 84, 177
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 308
CseI GACGC 1 cut(s) 321
CsiI ACCWGGT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 194, 244
CviAII CATG 2 cut(s) 220, 226
CviJI RGCY 8 cut(s) 20, 38, 53, 86, 121, 146, 160, 179
CviKI_1 RGCY 8 cut(s) 20, 38, 53, 86, 121, 146, 160, 179
CviQI GTAC 2 cut(s) 194, 244
DdeI CTNAG 3 cut(s) 87, 161, 186
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
DriI GACNNNNNGTC 1 cut(s) 331
Eam1105I GACNNNNNGTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 4 cut(s) 141, 196, 310, 372
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 2 cut(s) 223, 229
FaiI YATR 3 cut(s) 128, 221, 227
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 219, 225
Fnu4HI GCNGC 4 cut(s) 18, 21, 39, 137
FokI GGATG 5 cut(s) 40, 193, 227, 259, 284
Fsp4HI GCNGC 4 cut(s) 18, 21, 39, 137
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 140
GluI GCNGC 4 cut(s) 18, 21, 39, 137
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 146, 179
HgaI GACGC 1 cut(s) 321
HhaI GCGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 223, 229
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 2 cut(s) 101, 351
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 3 cut(s) 190, 253, 365
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 17, 41, 272
HpyF3I CTNAG 3 cut(s) 87, 161, 186
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 2 cut(s) 223, 229
HspAI GCGC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 369
LpnPI CCDG 9 cut(s) 128, 155, 161, 183, 210, 254, 297, 324, 359
Lsp1109I GCAGC 4 cut(s) 7, 25, 29, 148
LweI GCATC 1 cut(s) 281
MabI ACCWGGT 1 cut(s) 310
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 1 cut(s) 76
MluCI AATT 1 cut(s) 286
MlyI GAGTC 2 cut(s) 110, 345
MnlI CCTC 3 cut(s) 24, 82, 286
MseI TTAA 2 cut(s) 12, 78
MslI CAYNNNNRTG 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 20
MspR9I CCNGG 4 cut(s) 143, 198, 312, 374
MvaI CCWGG 4 cut(s) 143, 198, 312, 374
NdeII GATC 1 cut(s) 369
NlaIII CATG 2 cut(s) 223, 229
NmuCI GTSAC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 4 cut(s) 19, 22, 40, 138
PleI GAGTC 2 cut(s) 109, 345
PpsI GAGTC 2 cut(s) 109, 345
PshBI ATTAAT 1 cut(s) 12
Psp6I CCWGG 4 cut(s) 141, 196, 310, 372
PspGI CCWGG 4 cut(s) 141, 196, 310, 372
PspPI GGNCC 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 195, 245
RsaNI GTAC 2 cut(s) 194, 244
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 2 cut(s) 12, 78
SatI GCNGC 4 cut(s) 18, 21, 39, 137
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 1 cut(s) 308
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 110, 345
ScrFI CCNGG 4 cut(s) 143, 198, 312, 374
SetI ASST 6 cut(s) 22, 55, 88, 195, 199, 316
SexAI ACCWGGT 1 cut(s) 310
SfaNI GCATC 1 cut(s) 281
SfcI CTRYAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 4 cut(s) 141, 196, 310, 372
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 195
TaqI TCGA 1 cut(s) 368
TasI AATT 1 cut(s) 286
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 2 cut(s) 12, 78
Tru9I TTAA 2 cut(s) 12, 78
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 17, 20, 38, 136
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 17, 272, 286
TspGWI ACGGA 2 cut(s) 321, 363
TspRI CASTG 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 308
VspI ATTAAT 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XspI CTAG 1 cut(s) 24
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.