Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0007409

Physical Location & Seq

Genomic Coordinates Forward (+)

2483444 .. 2484202

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCCTCCAAATGGCGCGCAATCCAGCACCGCCACCGCTACACCTACAACACCGTCGTCTTCCCCGCCACCTACACCGATTCCCTGAACTCCCTCCCTCCACAAATCGCCACCTCAAAGTTCTTCTCCCTGCTCAAAGAGCTAGTCTCTCTGAACTCCACATACGCCCAGCTCAACCACACTAAGGGCCTCGCCGCCGCTTTCGGCGACGTACTCGCCAGTGGGGACGAAGCTCTGGTCTTCGAAGCGGCGCCGTTTTACTTGGAGCTTCTGTTTCTGGAAAATTCGCTGCCTCTGCATAAGACCCTCGTCTCTGTTTTGGCAAAGGCTCGGAATTTTCAGGCTCTGATCAGGAGATGCTATCGGAGGCTCTGCGAAGACTACGGCGGCGGTAGAGGGAAGCGGTTCTGCGTGTCCCGGTCGGCCTTATCGGTAATGGGTATGCCAAAGTTGGGGTTTTTGGTTGAAATTGTGGAAGAATGCGCCGTTTTGATCGCTTGCGATACAGTTTCTAGCTTGAATGCTCTGATTTCGGAGACGAAAGCGCACTCTCGGCCTTCTCCGATCGTCATGGAGCAATGCCAGGAGGCTCTGTCTTGTTTGTATTATCTGTTTCAGCGCTTCCCTTCGAAATTCGAGGAGTTCAATGGTGGTTCTGGGGGTGGTTGTGATAATGCTGGTCGTTCGAATGTGTTGGAGATGAGTGTGGCTGTTATTTTGAGTGTTCTGAGATCGGTGGCGTTTTCGAGGGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2428

Protein Analysis

253

Amino Acids

27.85

Weight (kDa)

8.56

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55160 AT3G55160 AT3G55160
fragaria_vesca	FvH4_6g48870
malus_domestica	MD09G1049900.v1.1 MD17G1050300.v1.1
prunus_persica	Prupe.3G268800_v2.0.a1 Prupe.3G268800_v2.0.a1
pyrus_communis	pycom111g04090 pycom111g04100 pycom111g04110 pycom111g04120 pycom17g04520 pycom17g04530
rosa_chinensis	RchiOBHm_Chr2g0168711
rosa_laevigata	RLG00000021803
rosa_multiflora	Rmu_sc0002611.1_g000006
rosa_roxburghii	Rroxscaffold_2G00082750
rosa_rugosa	Rorug02G0534800 Rorug02G0534900
rosa_samantha	Rh2AG605600 Rh2BG618600 Rh2CG586700 Rh2DG629100
rosa_wichuraiana	Rw2G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	250
AccII	CGCG	1 cut(s)	18
AciI	CCGC	9 cut(s)	31, 37, 66, 195, 198, 248, 387, 390, 403
AcsI	RAATTY	3 cut(s)	283, 334, 632
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	213
AfeI	AGCGCT	1 cut(s)	620
AfiI	CCNNNNNNNGG	3 cut(s)	12, 184, 452
AgsI	TTSAA	3 cut(s)	467, 520, 646
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	5 cut(s)	142, 172, 233, 268, 516
AluI	AGCT	5 cut(s)	142, 172, 233, 268, 516
Alw26I	GTCTC	3 cut(s)	151, 316, 530
AlwNI	CAGNNNCTG	1 cut(s)	346
Aor51HI	AGCGCT	1 cut(s)	620
AoxI	GGCC	3 cut(s)	187, 423, 554
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	3 cut(s)	283, 334, 632
ArsI	GACNNNNNNTTYG	4 cut(s)	129, 161, 222, 254
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	6 cut(s)	18, 20, 253, 485, 547, 621
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	418
AsuII	TTCGAA	3 cut(s)	243, 629, 686
BanI	GGYRCC	1 cut(s)	250
BbsI	GAAGAC	3 cut(s)	52, 232, 384
BbvI	GCAGC	1 cut(s)	276
BceAI	ACGGC	3 cut(s)	238, 400, 470
BciT130I	CCWGG	1 cut(s)	584
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	151, 316, 530
BfaI	CTAG	2 cut(s)	143, 513
BfoI	RGCGCY	2 cut(s)	254, 622
BisI	GCNGC	5 cut(s)	195, 198, 249, 290, 388
BlsI	GCNGC	5 cut(s)	196, 199, 250, 291, 389
Bme1390I	CCNGG	2 cut(s)	418, 584
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	2 cut(s)	418, 584
BmsI	GCATC	1 cut(s)	347
BoxI	GACNNNNGTC	1 cut(s)	308
BpiI	GAAGAC	3 cut(s)	52, 232, 384
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bpu14I	TTCGAA	3 cut(s)	243, 629, 686
BpuMI	CCSGG	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	251
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 578, 608
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 184, 452
Bse1I	ACTGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	584
BseLI	CCNNNNNNNGG	3 cut(s)	12, 184, 452
BseMI	GCAATG	1 cut(s)	584
BseMII	CTCAG	1 cut(s)	719
BseNI	ACTGG	1 cut(s)	219
BsePI	GCGCGC	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	1 cut(s)	276
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	18
Bsh1285I	CGRYCG	2 cut(s)	422, 567
BshFI	GGCC	3 cut(s)	189, 425, 556
BshNI	GGYRCC	1 cut(s)	250
BsiEI	CGRYCG	2 cut(s)	422, 567
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	2 cut(s)	239, 400
BslI	CCNNNNNNNGG	3 cut(s)	12, 184, 452
BsmAI	GTCTC	3 cut(s)	151, 316, 530
BsmBI	CGTCTC	2 cut(s)	316, 530
BsmFI	GGGAC	2 cut(s)	239, 400
BsmI	GAATGC	2 cut(s)	485, 526
BsnI	GGCC	3 cut(s)	189, 425, 556
Bsp119I	TTCGAA	3 cut(s)	243, 629, 686
Bsp143I	GATC	4 cut(s)	348, 492, 564, 731
BspACI	CCGC	9 cut(s)	31, 37, 66, 195, 198, 248, 387, 390, 403
BspANI	GGCC	3 cut(s)	189, 425, 556
BspCNI	CTCAG	1 cut(s)	720
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	252
BspT104I	TTCGAA	3 cut(s)	243, 629, 686
BspT107I	GGYRCC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	219
BssHII	GCGCGC	1 cut(s)	16
BssMI	GATC	4 cut(s)	348, 492, 564, 731
BssNI	GRCGYC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	55, 508
BstACI	GRCGYC	1 cut(s)	251
BstBI	TTCGAA	3 cut(s)	243, 629, 686
BstC8I	GCNNGC	2 cut(s)	18, 499
BstDEI	CTNAG	2 cut(s)	183, 728
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	2 cut(s)	254, 622
BstHHI	GCGC	6 cut(s)	18, 20, 253, 485, 547, 621
BstKTI	GATC	4 cut(s)	351, 495, 567, 734
BstMAI	GTCTC	3 cut(s)	151, 316, 530
BstMBI	GATC	4 cut(s)	348, 492, 564, 731
BstMCI	CGRYCG	2 cut(s)	422, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 295, 553
BstNI	CCWGG	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	416, 582
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	276
BstV2I	GAAGAC	3 cut(s)	52, 232, 384
BsuRI	GGCC	3 cut(s)	189, 425, 556
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	18, 499
CaiI	CAGNNNCTG	1 cut(s)	346
CfoI	GCGC	6 cut(s)	18, 20, 253, 485, 547, 621
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	571
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	2 cut(s)	183, 728
DinI	GGCGCC	1 cut(s)	252
DpnI	GATC	4 cut(s)	350, 494, 566, 733
DpnII	GATC	4 cut(s)	348, 492, 564, 731
Eco47III	AGCGCT	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	252
EheI	GGCGCC	1 cut(s)	252
Esp3I	CGTCTC	2 cut(s)	316, 530
FaeI	CATG	1 cut(s)	574
FaiI	YATR	4 cut(s)	163, 300, 443, 572
FaqI	GGGAC	2 cut(s)	239, 400
FatI	CATG	1 cut(s)	570
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	195, 198, 249, 290, 388
Fsp4HI	GCNGC	5 cut(s)	195, 198, 249, 290, 388
FspBI	CTAG	2 cut(s)	143, 513
GlaI	GCGC	6 cut(s)	17, 19, 252, 484, 546, 620
GluI	GCNGC	5 cut(s)	195, 198, 249, 290, 388
GsaI	CCCAGC	1 cut(s)	172
HaeII	RGCGCY	2 cut(s)	254, 622
HaeIII	GGCC	3 cut(s)	189, 425, 556
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	6 cut(s)	18, 20, 253, 485, 547, 621
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	574
Hin6I	GCGC	6 cut(s)	16, 18, 251, 483, 545, 619
HinP1I	GCGC	6 cut(s)	16, 18, 251, 483, 545, 619
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	418
Hpy188I	TCNGA	8 cut(s)	153, 333, 348, 366, 528, 535, 564, 729
Hpy188III	TCNNGA	2 cut(s)	278, 352
Hpy99I	CGWCG	2 cut(s)	59, 212
HpyAV	CCTTC	2 cut(s)	567, 636
HpyCH4III	ACNGT	2 cut(s)	55, 508
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 295, 553
HpyF3I	CTNAG	2 cut(s)	183, 728
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	574
HspAI	GCGC	6 cut(s)	16, 18, 251, 483, 545, 619
KasI	GGCGCC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	4 cut(s)	348, 492, 564, 731
LmnI	GCTCC	2 cut(s)	265, 574
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	143, 513
MaeII	ACGT	1 cut(s)	210
MalI	GATC	4 cut(s)	350, 494, 566, 733
MboI	GATC	4 cut(s)	348, 492, 564, 731
MboII	GAAGA	5 cut(s)	52, 115, 232, 389, 488
MluCI	AATT	4 cut(s)	283, 334, 468, 632
Mly113I	GGCGCC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	675
MroXI	GAANNNNTTC	1 cut(s)	404
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	2 cut(s)	418, 584
Mva1269I	GAATGC	2 cut(s)	485, 526
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	139, 295, 553
NarI	GGCGCC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	4 cut(s)	348, 492, 564, 731
NlaIII	CATG	1 cut(s)	574
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	532
NspV	TTCGAA	3 cut(s)	243, 629, 686
PauI	GCGCGC	1 cut(s)	16
PctI	GAATGC	2 cut(s)	485, 526
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	196, 199, 250, 291, 389
Ple19I	CGATCG	1 cut(s)	567
PluTI	GGCGCC	1 cut(s)	254
PshAI	GACNNNNGTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	187
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PstNI	CAGNNNCTG	1 cut(s)	346
PteI	GCGCGC	1 cut(s)	16
PvuI	CGATCG	1 cut(s)	567
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	5 cut(s)	195, 198, 249, 290, 388
Sau3AI	GATC	4 cut(s)	348, 492, 564, 731
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	418, 584
SetI	ASST	9 cut(s)	47, 74, 116, 144, 174, 213, 235, 270, 518
SfaNI	GCATC	1 cut(s)	347
SfoI	GGCGCC	1 cut(s)	252
SfuI	TTCGAA	3 cut(s)	243, 629, 686
Sse9I	AATT	4 cut(s)	283, 334, 468, 632
SsiI	CCGC	9 cut(s)	31, 37, 66, 195, 198, 248, 387, 390, 403
SspDI	GGCGCC	1 cut(s)	250
SspMI	CTAG	2 cut(s)	143, 513
StyD4I	CCNGG	2 cut(s)	416, 582
TaaI	ACNGT	2 cut(s)	55, 508
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	5 cut(s)	243, 629, 636, 686, 746
TasI	AATT	4 cut(s)	283, 334, 468, 632
TauI	GCSGC	4 cut(s)	197, 200, 251, 390
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	289
TspRI	CASTG	1 cut(s)	226
XapI	RAATTY	3 cut(s)	283, 334, 632
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	2 cut(s)	143, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.