Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0007409

Physical Location & Seq

Genomic Coordinates Forward (+)

2484957 .. 2485721

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTGGATATGAGTCCTGGCTTGCTGTTTGACACTATACATGCGTACATTGATGATGACGTGTGCTGTGCTCTCACATCATTTTTGAAGATTTTACTTGAGGACTTGCGTAATGAGTGTTGGAGCAGTGATGGTATTGAAGGTGGTTATGCACTTTATAGGGGGCATTGTCTGCCTCCAATTTTGTCTGGACTTGCTTTTGGGGTTTCAAAGCTCCGCTCTAATTTGAACACTTATGCTCTACCAATTTTACTTGAAGTGGATGAGGACAGTATATTTGCTATGCTTGCTTTTATTTCAGTTGGTCCGAGCAAGGGTGAAAGTCAACTGTCATATCCTGAGCTTTGTCGTGGAAACATGGAACCGAGAGTTCAACAGAAAGTGGCCATCTTAGTTTCATTGCTGAAGGTATCTCGTTTACTTGCATTGCTTGAAGGGGACATTGATTATGCAGTATGTGAAAATTTTGGTGGACTGGAAACAAATTTCCCCGAACGACATGCTCTTGTTTCTATCAAGGGGATAAAGGTTGAAGTTCGTGTTGAGTGGCTAGTGCTGGCATTGACCCATGTTGATGATTCATTACGTGTGGATGCTGCAGAGACACTTTTCTTGAATCCCAAGACAGCTAGTTTACCTTCCCATTTAGAACTCATGTTATTAAAGGAAGCAGTGCCATTGAACATGAGGTGTTGCTCTACAGCTTTCCAAATGAAGTGGAGTAGCTTGTTCAGAAAGTTTTTTGCTCGGTCCGAACAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2428

Protein Analysis

255

Amino Acids

28.33

Weight (kDa)

5.18

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55160 AT3G55160 AT3G55160
fragaria_vesca	FvH4_6g48870
malus_domestica	MD09G1049900.v1.1 MD17G1050300.v1.1
prunus_persica	Prupe.3G268800_v2.0.a1 Prupe.3G268800_v2.0.a1
pyrus_communis	pycom111g04090 pycom111g04100 pycom111g04110 pycom111g04120 pycom17g04520 pycom17g04530
rosa_chinensis	RchiOBHm_Chr2g0168711
rosa_laevigata	RLG00000021803
rosa_multiflora	Rmu_sc0002611.1_g000006
rosa_roxburghii	Rroxscaffold_2G00082750
rosa_rugosa	Rorug02G0534800 Rorug02G0534900
rosa_samantha	Rh2AG605600 Rh2BG618600 Rh2CG586700 Rh2DG629100
rosa_wichuraiana	Rw2G050200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	219
AciI	CCGC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	463, 484
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflIII	ACRYGT	2 cut(s)	60, 586
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	5 cut(s)	214, 343, 629, 704, 726
AluI	AGCT	5 cut(s)	214, 343, 629, 704, 726
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	596
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	2 cut(s)	463, 484
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	2 cut(s)	305, 750
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	2 cut(s)	305, 750
BalI	TGGCCA	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	2 cut(s)	125, 395
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BciT130I	CCWGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	2 cut(s)	551, 630
BfmI	CTRYAG	2 cut(s)	597, 699
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	2 cut(s)	305, 750
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	305, 750
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	583
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	119
BsaAI	YACGTR	1 cut(s)	587
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	398, 425
BseBI	CCWGG	1 cut(s)	18
BseGI	GGATG	2 cut(s)	268, 598
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	2 cut(s)	398, 425
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	480
BseXI	GCAGC	1 cut(s)	583
BshFI	GGCC	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	596
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	386
Bsp1286I	GDGCHC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	601
BsrBI	CCGCTC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	398, 425
BsrI	ACTGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	272, 330
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	23, 288, 558
BstDEI	CTNAG	2 cut(s)	339, 391
BstF5I	GGATG	2 cut(s)	268, 598
BstMAI	GTCTC	1 cut(s)	596
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 287
BstNI	CCWGG	1 cut(s)	18
BstNSI	RCATGY	2 cut(s)	44, 503
BstSCI	CCNGG	1 cut(s)	16
BstSFI	CTRYAG	2 cut(s)	597, 699
BstV1I	GCAGC	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	268, 598
BtsI	GCAGTG	2 cut(s)	133, 678
BtsIMutI	CAGTG	2 cut(s)	133, 678
Cac8I	GCNNGC	3 cut(s)	23, 288, 558
Cfr13I	GGNCC	2 cut(s)	305, 750
CpoI	CGGWCCG	1 cut(s)	750
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	698, 733
CspI	CGGWCCG	1 cut(s)	750
CviAII	CATG	6 cut(s)	41, 358, 500, 569, 655, 685
CviJI	RGCY	8 cut(s)	21, 214, 343, 386, 550, 629, 704, 726
CviKI_1	RGCY	8 cut(s)	21, 214, 343, 386, 550, 629, 704, 726
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	339, 391
EaeI	YGGCCR	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	305, 750
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	16
FaeI	CATG	6 cut(s)	44, 361, 503, 572, 658, 688
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	6 cut(s)	40, 357, 499, 568, 654, 684
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	2 cut(s)	275, 605
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	2 cut(s)	551, 630
GluI	GCNGC	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	386
Hin1II	CATG	6 cut(s)	44, 361, 503, 572, 658, 688
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HinfI	GANTC	3 cut(s)	13, 578, 616
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	4 cut(s)	326, 419, 473, 635
Hpy188I	TCNGA	3 cut(s)	309, 734, 754
Hpy188III	TCNNGA	3 cut(s)	189, 338, 613
Hpy8I	GTNNAC	4 cut(s)	326, 419, 473, 635
HpyAV	CCTTC	4 cut(s)	134, 400, 428, 648
HpyCH4III	ACNGT	2 cut(s)	272, 330
HpyCH4IV	ACGT	2 cut(s)	60, 586
HpyCH4V	TGCA	4 cut(s)	152, 425, 452, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 287
HpyF3I	CTNAG	2 cut(s)	339, 391
HpySE526I	ACGT	2 cut(s)	60, 586
Hsp92II	CATG	6 cut(s)	44, 361, 503, 572, 658, 688
LmnI	GCTCC	2 cut(s)	123, 219
LpnPI	CCDG	6 cut(s)	3, 30, 174, 351, 461, 542
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	551, 630
MaeII	ACGT	2 cut(s)	60, 586
MbiI	CCGCTC	1 cut(s)	219
MboII	GAAGA	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	5 cut(s)	180, 223, 246, 463, 484
MluNI	TGGCCA	1 cut(s)	386
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	4 cut(s)	94, 186, 259, 681
Mox20I	TGGCCA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	1 cut(s)	573
Msp20I	TGGCCA	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	172, 287
NlaIII	CATG	6 cut(s)	44, 361, 503, 572, 658, 688
NlaIV	GGNNCC	1 cut(s)	363
NspI	RCATGY	2 cut(s)	44, 503
PfeI	GAWTC	2 cut(s)	578, 616
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	305, 750
PstI	CTGCAG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	573
Rsr2I	CGGWCCG	1 cut(s)	750
RsrII	CGGWCCG	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	1 cut(s)	597
Sau96I	GGNCC	2 cut(s)	305, 750
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	2 cut(s)	597, 699
SinI	GGWCC	2 cut(s)	305, 750
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	5 cut(s)	180, 223, 246, 463, 484
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	551, 630
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	272, 330
TaiI	ACGT	2 cut(s)	63, 589
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	5 cut(s)	180, 223, 246, 463, 484
TfiI	GAWTC	2 cut(s)	578, 616
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	2 cut(s)	133, 678
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	387, 570, 728
TspRI	CASTG	2 cut(s)	133, 678
VpaK11BI	GGWCC	2 cut(s)	305, 750
XapI	RAATTY	2 cut(s)	463, 484
XceI	RCATGY	2 cut(s)	44, 503
XspI	CTAG	2 cut(s)	551, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.