Rorug02G0534800

Putative death-receptor fusion protein (DUF2428)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007409
Physical Location & Seq
Forward (+)
66388120 .. 66391792
3673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0534800.1

Sequence Viewer

Length: 2040 bp
ATGCAATTTCTTGCATTATATGCTCCCTATTTTCTCTTACTTTCATGCATACTGCAAAATTACCATTCCATTAAAGCCCAAGTAATTGACAATTTTTTGAACTGTAACGGAACTGTCAATTATACTTCCGGGAGTGTCTATGAGCATAGGTTGAACCTCACCCTCAATTCCCTTGTTGCCAATGCCTCTCTCACAGGATTCTACATGACAAACGTCGGTGACACAAATGACACAGTTTATGGACTTGTTCAATGCAGGGGAGACCTCTCAAAAAATGATTGCAATACTTGTGCAAACACAGCAGCCACAAAGATCAGGCAACTATGTCTAAGCCAGAAGGAGGCTTCCATTGGCTATGTTAATTGTTCATTACAGTATTCCAACCGGCGTTTTTTCTCTACTTTCGACAGCTTTCCCAGATTAAATTTACACAATTACAAGACAGCACCTGATCCGGTTCTTTATAATCGTCAGCTGGGTAACTTGGTTAAGAATCTATCTTCAAAAGCTGCATCTGATCCTTCCAGATTTGCCATTGGGTTCACAAGTTACACAGATTTCATTGATATATATGGTATGGCTCAGTGCACCCAAGACTTGGCAGAGAACAGCTGCTTAATTTGCCTGCAAGAGATTGCTTTTTATATTCCCCAGGATGGAACAGTTGGGGTTACATTGCTTTCTAGGAGTTGCAATCTTCGCTATGAGATATATTCGTTTTCTGTGTCACCATCACGCAATCAAACACCTCCAGCAGCATTGCCTCCATCTCCTTTGTTGCTTGAGCCTACACCAGCTACTACTTCTACTACCACTGGTAGTAATACTACTAAAACTGGTGATGCTAGAAACAAAATTAGTTCTGGAACCATCATTGTCATAGTTATCCCAGCAGTTGTGGCATTGATAGTGATAATAGCAGTCACAACCTGCAGTTGTTACTTGCTGCGGAAAAAGAGTCAATCTGCTACACACCATGATGATGTTCTTGAAGATGGTAATGATACCATGGATGATGCACTTGTGATTGGACTAAGTACACTTAAAGTTGCAACAAGCGATTTCTCAGATGCGTATAAACTTGGAGAAGGCGGATTTGGTCCAGTTTACAAGGGAAAGCTACCAGATGGACGAGAAATAGCTGTTAAAAGGTTATCAAGTAACTCAGGGCAGGGTCTACAAGAACTAAAAACTGAAGTAGTTCTGGTTGCAAAGTTGCTGCATCGGAATTTGGTGAGGCTGTTAGGCTTCTGCTTAGAAGATGAAGAGAAGCTACTCGTGTATGAGTACCTAAGCAATGGGAGCTTGGACAAAATTTTATTTGATCAGGGGAGAAGATTTGGTTTGGAATGGGAAAGACGGTTCAAAATCATTGTTGGAATTGCTAAAGGACTACTTTATCTACATGAAGATTCTCAGCTTAGGATTATTCACCGAGATTTGAAAGCCAGCAATATCCTGTTAGATGAGGACATGAATCCCAAGATATCCGATTTTGGCTTAGCCAAACTGTTCTGTGGTAGCCAGACTCATGGCAATACAAATCGGATATCTGGTACTTTTGGATACATGGCACCTGAATATGCTAAGAATGGGAACTTTTCGACAAAATCGGATGCCTACAGCTTTGGCATTTTAGTTTTGGAAATTATAACAGGTCGAAAGAACTCTAGCTTCCGTGATTTTTCAAATCTTCAGAGTTATGCATGGCAACATTGGGCAAATGGAACAGCTTTGGATATGTTGGACTCAAGTGTAGGGGATCATCAGTGGCGTAGATTTGAAGTTTTAAAGTGCATCCACATTGGGCTATTATGTGTTCAAGAAGCTCCTACTGATAGACCAACCATGTCTGAGGTTGTTATGATGCTAAATAGCTACACTCTTACCTCCCAGGTACCTTCACTTCCAGCATTTTTCGTCCGGCAAGGAAGCTCTGCTCATTCGCAGCAGTTGGGGGCTTGCAGGGAAAGTTCTGCTGCTTCTGAAGTATCTCAATCAGTAAATGACGTTACAATAACCGAGCTTGATCCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2428

Protein Analysis

679

Amino Acids

74.97

Weight (kDa)

6.37

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 35 - 129 2.8e-20 Salt stress response/antifungal
Stress-antifung PF01657 152 - 237 9.5e-09 Salt stress response/antifungal
Pkinase PF00069 358 - 621 1.3e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 360 - 623 1.5e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 465, 1652
Acc36I ACCTGC 1 cut(s) 938
Acc65I GGTACC 1 cut(s) 1897
AccB1I GGYRCC 2 cut(s) 1573, 1897
AccB7I CCANNNNNTGG 1 cut(s) 598
AccI GTMKAC 1 cut(s) 1177
AciI CCGC 2 cut(s) 949, 1092
AclWI GGATC 4 cut(s) 446, 512, 1770, 2024
AcsI RAATTY 3 cut(s) 424, 1228, 1314
AcuI CTGAAG 3 cut(s) 1215, 1679, 2007
AfaI GTAC 4 cut(s) 1039, 1289, 1558, 1899
AfiI CCNNNNNNNGG 3 cut(s) 340, 598, 656
AjnI CCWGG 2 cut(s) 651, 1893
AjuI GAANNNNNNNTTGG 2 cut(s) 1080, 1112
AloI GAACNNNNNNTCC 2 cut(s) 1346, 1378
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 4 cut(s) 446, 512, 1770, 2024
AlwNI CAGNNNCTG 1 cut(s) 449
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 8 cut(s) 302, 509, 612, 755, 946, 1219, 1948, 1979
ApoI RAATTY 3 cut(s) 424, 1228, 1314
Asp700I GAANNNNTTC 1 cut(s) 1200
Asp718I GGTACC 1 cut(s) 1897
AspS9I GGNCC 1 cut(s) 1100
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 6 cut(s) 151, 230, 720, 851, 1246, 1424
AvaII GGWCC 1 cut(s) 1100
BaeGI GKGCMC 1 cut(s) 590
BanI GGYRCC 2 cut(s) 1573, 1897
BarI GAAGNNNNNNTAC 4 cut(s) 1257, 1289, 1890, 1922
BauI CACGAG 1 cut(s) 1277
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 8 cut(s) 314, 496, 599, 767, 933, 1206, 1960, 1966
BccI CCATC 6 cut(s) 650, 739, 775, 878, 989, 1121
BciT130I CCWGG 2 cut(s) 653, 1895
BciVI GTATCC 1 cut(s) 1559
BclI TGATCA 1 cut(s) 1324
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 3 cut(s) 684, 846, 1671
BfmI CTRYAG 2 cut(s) 931, 1621
BfuAI ACCTGC 1 cut(s) 938
BfuI GTATCC 1 cut(s) 1559
BisI GCNGC 8 cut(s) 303, 510, 613, 756, 947, 1220, 1949, 1980
BlpI GCTNAGC 1 cut(s) 1501
BlsI GCNGC 8 cut(s) 304, 511, 614, 757, 948, 1221, 1950, 1981
Bme1390I CCNGG 3 cut(s) 130, 653, 1895
Bme18I GGWCC 1 cut(s) 1100
BmgT120I GGNCC 1 cut(s) 1100
BmiI GGNNCC 3 cut(s) 868, 1575, 1899
BmrFI CCNGG 3 cut(s) 130, 653, 1895
BmsI GCATC 8 cut(s) 521, 832, 1006, 1060, 1231, 1606, 1806, 1857
BoxI GACNNNNGTC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 735
Bpu10I CCTNAGC 2 cut(s) 1292, 1421
Bpu1102I GCTNAGC 1 cut(s) 1501
BpuEI CTTGAG 2 cut(s) 803, 1735
BpuMI CCSGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 651, 1008, 1893
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 598, 656
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 3 cut(s) 820, 841, 1103
Bse3DI GCAATG 3 cut(s) 674, 758, 1303
BseBI CCWGG 2 cut(s) 653, 1895
BseDI CCNNGG 3 cut(s) 651, 1008, 1893
BseGI GGATG 4 cut(s) 661, 1018, 1621, 1797
BseLI CCNNNNNNNGG 3 cut(s) 340, 598, 656
BseMI GCAATG 3 cut(s) 674, 758, 1303
BseMII CTCAG 5 cut(s) 596, 1080, 1179, 1430, 1845
BseNI ACTGG 3 cut(s) 820, 841, 1103
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 8 cut(s) 314, 496, 599, 767, 933, 1206, 1960, 1966
BseYI CCCAGC 2 cut(s) 475, 889
BshNI GGYRCC 2 cut(s) 1573, 1897
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 4 cut(s) 129, 385, 455, 1924
BslI CCNNNNNNNGG 3 cut(s) 340, 598, 656
BsmAI GTCTC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 590
Bsp143I GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
Bsp1720I GCTNAGC 1 cut(s) 1501
Bsp19I CCATGG 1 cut(s) 1008
BspACI CCGC 2 cut(s) 949, 1092
BspCNI CTCAG 5 cut(s) 595, 1079, 1178, 1429, 1846
BspLI GGNNCC 3 cut(s) 868, 1575, 1899
BspMAI CTGCAG 1 cut(s) 935
BspMI ACCTGC 1 cut(s) 938
BspPI GGATC 4 cut(s) 446, 512, 1770, 2024
BspT107I GGYRCC 2 cut(s) 1573, 1897
BspTNI GGTCTC 1 cut(s) 255
BsrDI GCAATG 3 cut(s) 674, 758, 1303
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 3 cut(s) 820, 841, 1103
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 3 cut(s) 651, 1008, 1893
BssMI GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
BssSI CACGAG 1 cut(s) 1277
BssT1I CCWWGG 1 cut(s) 1008
Bst2BI CACGAG 1 cut(s) 1277
Bst2UI CCWGG 2 cut(s) 653, 1895
Bst4CI ACNGT 7 cut(s) 104, 115, 235, 375, 664, 1362, 1512
Bst6I CTCTTC 1 cut(s) 1260
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 626, 1450, 1963
BstDSI CCRYGG 1 cut(s) 1008
BstF5I GGATG 4 cut(s) 661, 1018, 1621, 1797
BstKTI GATC 6 cut(s) 315, 454, 520, 1327, 1765, 2032
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
BstMWI GCNNNNNNNGC 6 cut(s) 20, 299, 621, 699, 899, 1302
BstNI CCWGG 2 cut(s) 653, 1895
BstPAI GACNNNNGTC 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 128, 651, 1893
BstSFI CTRYAG 2 cut(s) 931, 1621
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 8 cut(s) 314, 496, 599, 767, 933, 1206, 1960, 1966
BstXI CCANNNNNNTGG 1 cut(s) 1532
BsuI GTATCC 1 cut(s) 1559
BtgI CCRYGG 1 cut(s) 1008
BtsCI GGATG 4 cut(s) 661, 1018, 1621, 1797
BtsIMutI CAGTG 3 cut(s) 590, 813, 1775
BveI ACCTGC 1 cut(s) 938
Cac8I GCNNGC 3 cut(s) 626, 1450, 1963
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 1100
Csp6I GTAC 4 cut(s) 1038, 1288, 1557, 1898
CviQI GTAC 4 cut(s) 1038, 1288, 1557, 1898
DpnI GATC 6 cut(s) 314, 453, 519, 1326, 1764, 2031
DpnII GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
DraI TTTAAA 1 cut(s) 1791
Eam1104I CTCTTC 1 cut(s) 1260
EarI CTCTTC 1 cut(s) 1260
EciI GGCGGA 1 cut(s) 1107
Eco130I CCWWGG 1 cut(s) 1008
Eco31I GGTCTC 1 cut(s) 255
Eco32I GATATC 2 cut(s) 1488, 1551
Eco47I GGWCC 1 cut(s) 1100
Eco57I CTGAAG 3 cut(s) 1215, 1679, 2007
EcoRII CCWGG 2 cut(s) 651, 1893
EcoRV GATATC 2 cut(s) 1488, 1551
EcoT14I CCWWGG 1 cut(s) 1008
EcoT22I ATGCAT 2 cut(s) 50, 1708
ErhI CCWWGG 1 cut(s) 1008
FalI AAGNNNNNCTT 2 cut(s) 1380, 1412
FbaI TGATCA 1 cut(s) 1324
FblI GTMKAC 1 cut(s) 1177
Fnu4HI GCNGC 8 cut(s) 303, 510, 613, 756, 947, 1220, 1949, 1980
FokI GGATG 4 cut(s) 668, 1025, 1628, 1784
Fsp4HI GCNGC 8 cut(s) 303, 510, 613, 756, 947, 1220, 1949, 1980
FspBI CTAG 3 cut(s) 684, 846, 1671
GluI GCNGC 8 cut(s) 303, 510, 613, 756, 947, 1220, 1949, 1980
GsaI CCCAGC 2 cut(s) 479, 893
GsuI CTGGAG 1 cut(s) 735
HapII CCGG 4 cut(s) 129, 385, 455, 1924
HinfI GANTC 7 cut(s) 198, 493, 958, 1412, 1477, 1528, 1748
HpaII CCGG 4 cut(s) 129, 385, 455, 1924
HphI GGTGA 6 cut(s) 151, 230, 720, 851, 1246, 1424
Hpy166II GTNNAC 5 cut(s) 543, 588, 1040, 1108, 1178
Hpy188I TCNGA 9 cut(s) 517, 1069, 1227, 1492, 1548, 1615, 1698, 1855, 1987
Hpy188III TCNNGA 4 cut(s) 525, 864, 989, 1823
Hpy8I GTNNAC 5 cut(s) 543, 588, 1040, 1108, 1178
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 4 cut(s) 331, 531, 1082, 1911
HpyCH4III ACNGT 7 cut(s) 104, 115, 235, 375, 664, 1362, 1512
HpyCH4IV ACGT 2 cut(s) 213, 2010
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 299, 621, 699, 899, 1302
HpySE526I ACGT 2 cut(s) 213, 2010
KpnI GGTACC 1 cut(s) 1901
Ksp22I TGATCA 1 cut(s) 1324
Kzo9I GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
LmnI GCTCC 3 cut(s) 28, 1302, 1834
Lsp1109I GCAGC 8 cut(s) 314, 496, 599, 767, 933, 1206, 1960, 1966
LweI GCATC 8 cut(s) 521, 832, 1006, 1060, 1231, 1606, 1806, 1857
MaeI CTAG 3 cut(s) 684, 846, 1671
MaeII ACGT 2 cut(s) 213, 2010
MalI GATC 6 cut(s) 314, 453, 519, 1326, 1764, 2031
MboI GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
MboII GAAGA 8 cut(s) 492, 689, 1004, 1271, 1277, 1347, 1421, 1685
MhlI GDGCHC 1 cut(s) 590
MlyI GAGTC 3 cut(s) 967, 1522, 1742
MmeI TCCRAC 3 cut(s) 405, 1357, 1725
Mph1103I ATGCAT 2 cut(s) 50, 1708
MroXI GAANNNNTTC 1 cut(s) 1200
MseI TTAA 8 cut(s) 72, 360, 422, 489, 617, 1044, 1146, 1790
MslI CAYNNNNRTG 2 cut(s) 978, 981
MspA1I CMGCKG 2 cut(s) 475, 612
MspI CCGG 4 cut(s) 129, 385, 455, 1924
MspR9I CCNGG 3 cut(s) 130, 653, 1895
MvaI CCWGG 2 cut(s) 653, 1895
MwoI GCNNNNNNNGC 6 cut(s) 20, 299, 621, 699, 899, 1302
NciI CCSGG 1 cut(s) 130
NcoI CCATGG 1 cut(s) 1008
NdeII GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
NlaIV GGNNCC 3 cut(s) 868, 1575, 1899
NmuCI GTSAC 3 cut(s) 218, 726, 922
NsiI ATGCAT 2 cut(s) 50, 1708
PdmI GAANNNNTTC 1 cut(s) 1200
PfeI GAWTC 4 cut(s) 198, 493, 1412, 1477
PflMI CCANNNNNTGG 1 cut(s) 598
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 8 cut(s) 304, 511, 614, 757, 948, 1221, 1950, 1981
PleI GAGTC 3 cut(s) 966, 1522, 1742
PpsI GAGTC 3 cut(s) 966, 1522, 1742
PshAI GACNNNNGTC 1 cut(s) 212
PsiI TTATAA 2 cut(s) 465, 1652
Psp6I CCWGG 2 cut(s) 651, 1893
PspFI CCCAGC 2 cut(s) 475, 889
PspGI CCWGG 2 cut(s) 651, 1893
PspN4I GGNNCC 3 cut(s) 868, 1575, 1899
PspPI GGNCC 1 cut(s) 1100
PstI CTGCAG 1 cut(s) 935
PstNI CAGNNNCTG 1 cut(s) 449
PvuII CAGCTG 2 cut(s) 475, 612
RsaI GTAC 4 cut(s) 1039, 1289, 1558, 1899
RsaNI GTAC 4 cut(s) 1038, 1288, 1557, 1898
RseI CAYNNNNRTG 2 cut(s) 978, 981
SaqAI TTAA 8 cut(s) 72, 360, 422, 489, 617, 1044, 1146, 1790
SatI GCNGC 8 cut(s) 303, 510, 613, 756, 947, 1220, 1949, 1980
Sau3AI GATC 6 cut(s) 312, 451, 517, 1324, 1762, 2029
Sau96I GGNCC 1 cut(s) 1100
SchI GAGTC 3 cut(s) 967, 1522, 1742
ScrFI CCNGG 3 cut(s) 130, 653, 1895
SduI GDGCHC 1 cut(s) 590
SfaNI GCATC 8 cut(s) 521, 832, 1006, 1060, 1231, 1606, 1806, 1857
SfcI CTRYAG 2 cut(s) 931, 1621
SinI GGWCC 1 cut(s) 1100
SmiMI CAYNNNNRTG 2 cut(s) 978, 981
SmlI CTYRAG 2 cut(s) 782, 1750
SmoI CTYRAG 2 cut(s) 782, 1750
SsiI CCGC 2 cut(s) 949, 1092
SspMI CTAG 3 cut(s) 684, 846, 1671
StyD4I CCNGG 3 cut(s) 128, 651, 1893
StyI CCWWGG 1 cut(s) 1008
TaaI ACNGT 7 cut(s) 104, 115, 235, 375, 664, 1362, 1512
TaiI ACGT 2 cut(s) 216, 2013
TaqI TCGA 4 cut(s) 405, 1604, 1660, 2035
TatI WGTACW 1 cut(s) 1037
TfiI GAWTC 4 cut(s) 198, 493, 1412, 1477
Tru1I TTAA 8 cut(s) 72, 360, 422, 489, 617, 1044, 1146, 1790
Tru9I TTAA 8 cut(s) 72, 360, 422, 489, 617, 1044, 1146, 1790
TscAI CASTG 3 cut(s) 590, 820, 1775
TseFI GTSAC 3 cut(s) 218, 726, 922
TseI GCWGC 8 cut(s) 302, 509, 612, 755, 946, 1219, 1948, 1979
Tsp45I GTSAC 3 cut(s) 218, 726, 922
TspDTI ATGAA 6 cut(s) 33, 357, 550, 1278, 1422, 1490
TspGWI ACGGA 2 cut(s) 123, 1667
TspRI CASTG 3 cut(s) 590, 820, 1775
Van91I CCANNNNNTGG 1 cut(s) 598
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 1100
XapI RAATTY 3 cut(s) 424, 1228, 1314
XmiI GTMKAC 1 cut(s) 1177
XmnI GAANNNNTTC 1 cut(s) 1200
XspI CTAG 3 cut(s) 684, 846, 1671
Zsp2I ATGCAT 2 cut(s) 50, 1708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.